4ESYA

Crystal structure of the cbs domain of cbs domain containing membrane protein from sphaerobacter thermophilus
Total Genus 45
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
163
structure length
163
Chain Sequence
RVAEQARRRAIARAIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLLLE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords CBS domain containing membrane protein
publication title Crystal Structure of the CBS Domain of CBS Domain Containing Membrane Protein from Sphaerobacter thermophilus
rcsb
source organism Sphaerobacter thermophilus
total genus 45
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2012-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 4esyA00
2O16A 3T4NC 2UV4A 1O50A 3KXRA 3K2VA 3PC4A 2RIHA 3GBYA 5IIPA 3K6EA 3LFZA 2P9MA 2UV5A 5LXQA 4IY2A 5K23C 3LHHA 5K25C 4COOA 2RIFA 2YVXA 4O9KA 3FV6A 4HG0A 4GQYA 4IYSA 3KPDA 4L27A 2QREE 3FNAA 3PC2A 4IY0A 3FWRA 3TDHC 3KPBA 3I8NA 2NYEA 1PVMA 4IY3A 4IY4A 3PC3A 2EMQA 2ZY9A 2RC3A 3L31A 2OOYE 4ESYA 3ORGA 4L28A 2PFIA 4NOCA 1Y5HA 2OOXE 2NYCA 4GQVA 3HF7A 5K22B 4DQWA 3DDJA 4FRYA 3KPCA 2YVYA 3FHMA 3TE5C 1PBJA 2OUXA 4P1OA 4ESYB 4L3VA 2QRDE 2UV7A 3LQNA 4FXSA 2QRCE 1XKFA 2UV6A 2D4ZA 5KS7A 3FWSA 2QH1A 5MMZA 3LV9A 2QR1E 2EF7A 1YAVA 3OI8A 4L0DA 2YZIA 3OCMA 4UUUA 3OCOA 2YVZA 3L2BA 2QLVC 3KH5A 2YZQA 5K24C 3SL7A 4GQWA 4P1GA 4PCUA
chains in the Genus database with same CATH superfamily
2O16A 3T4NC 2UV4A 1O50A 3KXRA 3K2VA 3PC4A 2RIHA 3GBYA 5IIPA 3K6EA 3LFZA 2P9MA 2UV5A 5LXQA 2J9LA 4IY2A 5K23C 3LHHA 5K25C 4COOA 2RIFA 2YVXA 4O9KA 3FV6A 4HG0A 4GQYA 4IYSA 3KPDA 4L27A 2QREE 3FNAA 3PC2A 4IY0A 3FWRA 3TDHC 3KPBA 3I8NA 2NYEA 1PVMA 4IY3A 4IY4A 3PC3A 2EMQA 2ZY9A 2RC3A 3L31A 2OOYE 4ESYA 3ORGA 4L28A 2PFIA 4NOCA 1Y5HA 2OOXE 2NYCA 4GQVA 3HF7A 5K22B 4DQWA 3DDJA 4FRYA 3KPCA 2YVYA 3FHMA 3TE5C 1PBJA 2OUXA 4P1OA 4ESYB 4L3VA 2QRDE 2UV7A 3LQNA 4FXSA 2QRCE 1XKFA 2UV6A 2D4ZA 5KS7A 3FWSA 2QH1A 5MMZA 3LV9A 2QR1E 2EF7A 1YAVA 3OI8A 4L0DA 2YZIA 2JA3A 3OCMA 4UUUA 3OCOA 2YVZA 3L2BA 2QLVC 3KH5A 2YZQA 5K24C 3SL7A 4GQWA 4P1GA 4PCUA
chains in the Genus database with same CATH topology
2O16A 3T4NC 2UV4A 1O50A 3KXRA 3K2VA 3PC4A 2RIHA 3GBYA 5IIPA 3K6EA 3LFZA 2P9MA 2UV5A 5LXQA 2J9LA 4IY2A 5K23C 3LHHA 5K25C 4COOA 2RIFA 2YVXA 4O9KA 3FV6A 4HG0A 4GQYA 4IYSA 3KPDA 4L27A 2QREE 3FNAA 3PC2A 4IY0A 3FWRA 3TDHC 3KPBA 3I8NA 2NYEA 1PVMA 4IY3A 4IY4A 3PC3A 2EMQA 2ZY9A 2RC3A 3L31A 2OOYE 4ESYA 3ORGA 4L28A 2PFIA 4NOCA 1Y5HA 2OOXE 2NYCA 4GQVA 3HF7A 5K22B 4DQWA 3DDJA 4FRYA 3KPCA 2YVYA 3FHMA 3TE5C 1PBJA 2OUXA 4P1OA 4ESYB 4L3VA 2QRDE 2UV7A 3LQNA 4FXSA 2QRCE 1XKFA 2UV6A 2D4ZA 5KS7A 3FWSA 2QH1A 5MMZA 3LV9A 2QR1E 2EF7A 1YAVA 3OI8A 4L0DA 2YZIA 2JA3A 3OCMA 4UUUA 3OCOA 2YVZA 3L2BA 2QLVC 3KH5A 2YZQA 5K24C 3SL7A 4GQWA 4P1GA 4PCUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O16 A;  3T4N C;  2UV4 A;  1O50 A;  3KXR A;  3K2V A;  3PC4 A;  2RIH A;  3GBY A;  5IIP A;  3K6E A;  3LFZ A;  2P9M A;  2UV5 A;  5LXQ A;  4IY2 A;  5K23 C;  3LHH A;  5K25 C;  4COO A;  2RIF A;  2YVX A;  4O9K A;  3FV6 A;  4HG0 A;  4GQY A;  4IYS A;  3KPD A;  4L27 A;  2QRE E;  3FNA A;  3PC2 A;  4IY0 A;  3FWR A;  3TDH C;  3KPB A;  3I8N A;  2NYE A;  1PVM A;  4IY3 A;  4IY4 A;  3PC3 A;  2EMQ A;  2ZY9 A;  2RC3 A;  3L31 A;  2OOY E;  4ESY A;  3ORG A;  4L28 A;  2PFI A;  4NOC A;  1Y5H A;  2OOX E;  2NYC A;  4GQV A;  3HF7 A;  5K22 B;  4DQW A;  3DDJ A;  4FRY A;  3KPC A;  2YVY A;  3FHM A;  3TE5 C;  1PBJ A;  2OUX A;  4P1O A;  4ESY B;  4L3V A;  2QRD E;  2UV7 A;  3LQN A;  4FXS A;  2QRC E;  1XKF A;  2UV6 A;  2D4Z A;  5KS7 A;  3FWS A;  2QH1 A;  5MMZ A;  3LV9 A;  2QR1 E;  2EF7 A;  1YAV A;  3OI8 A;  4L0D A;  2YZI A;  3OCM A;  4UUU A;  3OCO A;  2YVZ A;  3L2B A;  2QLV C;  3KH5 A;  2YZQ A;  5K24 C;  3SL7 A;  4GQW A;  4P1G A;  4PCU A; 
#chains in the Genus database with same CATH topology
 2O16 A;  3T4N C;  2UV4 A;  1O50 A;  3KXR A;  3K2V A;  3PC4 A;  2RIH A;  3GBY A;  5IIP A;  3K6E A;  3LFZ A;  2P9M A;  2UV5 A;  5LXQ A;  2J9L A;  4IY2 A;  5K23 C;  3LHH A;  5K25 C;  4COO A;  2RIF A;  2YVX A;  4O9K A;  3FV6 A;  4HG0 A;  4GQY A;  4IYS A;  3KPD A;  4L27 A;  2QRE E;  3FNA A;  3PC2 A;  4IY0 A;  3FWR A;  3TDH C;  3KPB A;  3I8N A;  2NYE A;  1PVM A;  4IY3 A;  4IY4 A;  3PC3 A;  2EMQ A;  2ZY9 A;  2RC3 A;  3L31 A;  2OOY E;  4ESY A;  3ORG A;  4L28 A;  2PFI A;  4NOC A;  1Y5H A;  2OOX E;  2NYC A;  4GQV A;  3HF7 A;  5K22 B;  4DQW A;  3DDJ A;  4FRY A;  3KPC A;  2YVY A;  3FHM A;  3TE5 C;  1PBJ A;  2OUX A;  4P1O A;  4ESY B;  4L3V A;  2QRD E;  2UV7 A;  3LQN A;  4FXS A;  2QRC E;  1XKF A;  2UV6 A;  2D4Z A;  5KS7 A;  3FWS A;  2QH1 A;  5MMZ A;  3LV9 A;  2QR1 E;  2EF7 A;  1YAV A;  3OI8 A;  4L0D A;  2YZI A;  2JA3 A;  3OCM A;  4UUU A;  3OCO A;  2YVZ A;  3L2B A;  2QLV C;  3KH5 A;  2YZQ A;  5K24 C;  3SL7 A;  4GQW A;  4P1G A;  4PCU A; 
#chains in the Genus database with same CATH homology
 2O16 A;  3T4N C;  2UV4 A;  1O50 A;  3KXR A;  3K2V A;  3PC4 A;  2RIH A;  3GBY A;  5IIP A;  3K6E A;  3LFZ A;  2P9M A;  2UV5 A;  5LXQ A;  2J9L A;  4IY2 A;  5K23 C;  3LHH A;  5K25 C;  4COO A;  2RIF A;  2YVX A;  4O9K A;  3FV6 A;  4HG0 A;  4GQY A;  4IYS A;  3KPD A;  4L27 A;  2QRE E;  3FNA A;  3PC2 A;  4IY0 A;  3FWR A;  3TDH C;  3KPB A;  3I8N A;  2NYE A;  1PVM A;  4IY3 A;  4IY4 A;  3PC3 A;  2EMQ A;  2ZY9 A;  2RC3 A;  3L31 A;  2OOY E;  4ESY A;  3ORG A;  4L28 A;  2PFI A;  4NOC A;  1Y5H A;  2OOX E;  2NYC A;  4GQV A;  3HF7 A;  5K22 B;  4DQW A;  3DDJ A;  4FRY A;  3KPC A;  2YVY A;  3FHM A;  3TE5 C;  1PBJ A;  2OUX A;  4P1O A;  4ESY B;  4L3V A;  2QRD E;  2UV7 A;  3LQN A;  4FXS A;  2QRC E;  1XKF A;  2UV6 A;  2D4Z A;  5KS7 A;  3FWS A;  2QH1 A;  5MMZ A;  3LV9 A;  2QR1 E;  2EF7 A;  1YAV A;  3OI8 A;  4L0D A;  2YZI A;  2JA3 A;  3OCM A;  4UUU A;  3OCO A;  2YVZ A;  3L2B A;  2QLV C;  3KH5 A;  2YZQ A;  5K24 C;  3SL7 A;  4GQW A;  4P1G A;  4PCU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...