4EVHA

Crystal structure of calcium-bound alpha-1 giardin
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
294
structure length
294
Chain Sequence
PKVTDIANELKQAIDAKDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKGGSEESLLMDLFSDRHEVRAQHIRDALSGRNDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVEDFMKDVGRKEDWCLLMEKWMAHERVSRPGSPEDEAQRLDQAFDQKNTAYLIDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIATIYTKTDYYTFYCAHFALLGMHRLAAYLINCACNDKGDEKRMRRITGMMVDKCLGAKHAYKIYGDMGTDIERCFDKRMAPILRTLWRVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Giardin subunit alpha-1
publication title Alpha-1 giardin is an annexin with highly unusual calcium-regulated mechanisms
pubmed doi rcsb
source organism Giardia intestinalis
total genus 120
structure length 294
sequence length 294
ec nomenclature
pdb deposition date 2012-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4evhA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4evhA03
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4evhA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 4evhA04
1YCNA 1BCWA 1N44A 2XO3A 1MCXA 1XJLA 1ALAA 1HVDA 1N42A 1BCYA 2HYUA 1YJ0A 1AVCA 1AOWA 4EVHA 1BC1A 1W3WA 1HAKA 2IICA 4X9PA 4MDVA 1BO9A 2XO2A 2ZHJA 1HVEA 4EVFA 1DM5A 2RANA 3BRXA 1AXNA 1AEIA 2ZOCA 1AIIA 1AVRA 1I4AA 2H0KA 2HYVA 1M9IA 4MDUA 1ANNA 1N00A 1G5NA 1DK5A 1HVGA 1N41A 1BCZA 1W7BA 2IE7A 2II2A 2Q4CA 4HREA 1YIIA 2H0MA 1SAVA 1ANXA 2IE6A 2HYWA 1AVHA 1HM6A 1BC0A 2H0LA 2ZHIA 1A8BA 1ANWA 1BC3A 1HVFA 1A8AA 1W45A
chains in the Genus database with same CATH superfamily
1C1KA 1YCNA 3ABOA 1XJLA 1R4AE 1BCYA 4KN7X 1PBVA 3USWA 1HAKA 2R0DA 3ABQA 3ABSA 1DM5A 2ZOCA 1AIIA 4Z21A 4MDUA 4Q2SA 2II2A 1ANNA 1HVGA 1DK5A 1BO9A 3AO0A 4C7PA 1BC9A 3TW5A 4KMUX 4JMIA 1W45A 1BCWA 1MCXA 1N42A 2HYUA 1AOWA 4JWLA 4A4PA 4X9PA 3ANYA 4EVFA 1AXNA 1AEIA 1AVRA 1I4AA 1R8QE 4D7QA 2HYVA 2XO2A 4JMOA 2IE7A 1BCZA 1ANXA 2IE6A 1R8ME 1RE0B 2ZHIA 1ANWA 1BC3A 3HJLA 4KN4X 1YJ0A 1AVCA 1BC1A 3ABRA 2IICA 1S9DE 4D7RA 4MDVA 1HVEA 1UPTB 1KU1A 1QC7A 2H0KA 4JXHA 3LTLA 1N00A 1W7BA 2Q4CA 4HREA 1YIIA 2H0MA 2R09A 3SWVA 2HYWA 1BC0A 3L8NA 2K6XA 1N44A 1HVFA 1A8AA 1XSZA 2VXGA 2XO3A 4OIYA 2OY9A 1ALAA 1HVDA 1YGMA 2QEZA 4JK1X 1Q8DA 4EVHA 1W3WA 1R8SE 3AJCA 1XT0B 2ZHJA 4L5MA 2RANA 3BRXA 4FQ0C 3USYA 1M9IA 4FHRB 1G5NA 1N41A 2HSNA 3SOHB 1LKVX 1SAVA 1AVHA 1HM6A 2H0LA 4C0AA 1A8BA
chains in the Genus database with same CATH topology
1YCNA 1BCWA 1N44A 2XO3A 1MCXA 1XJLA 1ALAA 1HVDA 1N42A 1BCYA 2HYUA 1YJ0A 1AVCA 1AOWA 4EVHA 1BC1A 1W3WA 1HAKA 2IICA 4X9PA 4MDVA 1BO9A 2XO2A 2ZHJA 1HVEA 4EVFA 1DM5A 2RANA 3BRXA 1AXNA 1AEIA 2ZOCA 1AIIA 1AVRA 1I4AA 2H0KA 2HYVA 1M9IA 4MDUA 1ANNA 1N00A 1G5NA 1DK5A 1HVGA 1N41A 1BCZA 1W7BA 2IE7A 2II2A 2Q4CA 4HREA 1YIIA 2H0MA 1SAVA 1ANXA 2IE6A 2HYWA 1AVHA 1HM6A 1BC0A 2H0LA 2ZHIA 1A8BA 1ANWA 1BC3A 1HVFA 1A8AA 1W45A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YCN A;  1BCW A;  1N44 A;  2XO3 A;  1MCX A;  1XJL A;  1ALA A;  1HVD A;  1N42 A;  1BCY A;  2HYU A;  1YJ0 A;  1AVC A;  1AOW A;  4EVH A;  1BC1 A;  1W3W A;  1HAK A;  2IIC A;  4X9P A;  4MDV A;  1BO9 A;  2XO2 A;  2ZHJ A;  1HVE A;  4EVF A;  1DM5 A;  2RAN A;  3BRX A;  1AXN A;  1AEI A;  2ZOC A;  1AII A;  1AVR A;  1I4A A;  2H0K A;  2HYV A;  1M9I A;  4MDU A;  1ANN A;  1N00 A;  1G5N A;  1DK5 A;  1HVG A;  1N41 A;  1BCZ A;  1W7B A;  2IE7 A;  2II2 A;  2Q4C A;  4HRE A;  1YII A;  2H0M A;  1SAV A;  1ANX A;  2IE6 A;  2HYW A;  1AVH A;  1HM6 A;  1BC0 A;  2H0L A;  2ZHI A;  1A8B A;  1ANW A;  1BC3 A;  1HVF A;  1A8A A;  1W45 A; 
#chains in the Genus database with same CATH topology
 1C1K A;  1YCN A;  3ABO A;  1XJL A;  1R4A E;  1BCY A;  4KN7 X;  1PBV A;  3USW A;  1HAK A;  2R0D A;  3ABQ A;  3ABS A;  1DM5 A;  2ZOC A;  1AII A;  4Z21 A;  4MDU A;  4Q2S A;  2II2 A;  1ANN A;  1HVG A;  1DK5 A;  1BO9 A;  3AO0 A;  4C7P A;  1BC9 A;  3TW5 A;  4KMU X;  4JMI A;  1W45 A;  1BCW A;  1MCX A;  1N42 A;  2HYU A;  1AOW A;  4JWL A;  4A4P A;  4X9P A;  3ANY A;  4EVF A;  1AXN A;  1AEI A;  1AVR A;  1I4A A;  1R8Q E;  4D7Q A;  2HYV A;  2XO2 A;  4JMO A;  2IE7 A;  1BCZ A;  1ANX A;  2IE6 A;  1R8M E;  1RE0 B;  2ZHI A;  1ANW A;  1BC3 A;  3HJL A;  4KN4 X;  1YJ0 A;  1AVC A;  1BC1 A;  3ABR A;  2IIC A;  1S9D E;  4D7R A;  4MDV A;  1HVE A;  1UPT B;  1KU1 A;  1QC7 A;  2H0K A;  4JXH A;  3LTL A;  1N00 A;  1W7B A;  2Q4C A;  4HRE A;  1YII A;  2H0M A;  2R09 A;  3SWV A;  2HYW A;  1BC0 A;  3L8N A;  2K6X A;  1N44 A;  1HVF A;  1A8A A;  1XSZ A;  2VXG A;  2XO3 A;  4OIY A;  2OY9 A;  1ALA A;  1HVD A;  1YGM A;  2QEZ A;  4JK1 X;  1Q8D A;  4EVH A;  1W3W A;  1R8S E;  3AJC A;  1XT0 B;  2ZHJ A;  4L5M A;  2RAN A;  3BRX A;  4FQ0 C;  3USY A;  1M9I A;  4FHR B;  1G5N A;  1N41 A;  2HSN A;  3SOH B;  1LKV X;  1SAV A;  1AVH A;  1HM6 A;  2H0L A;  4C0A A;  1A8B A; 
#chains in the Genus database with same CATH homology
 1YCN A;  1BCW A;  1N44 A;  2XO3 A;  1MCX A;  1XJL A;  1ALA A;  1HVD A;  1N42 A;  1BCY A;  2HYU A;  1YJ0 A;  1AVC A;  1AOW A;  4EVH A;  1BC1 A;  1W3W A;  1HAK A;  2IIC A;  4X9P A;  4MDV A;  1BO9 A;  2XO2 A;  2ZHJ A;  1HVE A;  4EVF A;  1DM5 A;  2RAN A;  3BRX A;  1AXN A;  1AEI A;  2ZOC A;  1AII A;  1AVR A;  1I4A A;  2H0K A;  2HYV A;  1M9I A;  4MDU A;  1ANN A;  1N00 A;  1G5N A;  1DK5 A;  1HVG A;  1N41 A;  1BCZ A;  1W7B A;  2IE7 A;  2II2 A;  2Q4C A;  4HRE A;  1YII A;  2H0M A;  1SAV A;  1ANX A;  2IE6 A;  2HYW A;  1AVH A;  1HM6 A;  1BC0 A;  2H0L A;  2ZHI A;  1A8B A;  1ANW A;  1BC3 A;  1HVF A;  1A8A A;  1W45 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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