4EVUA

Crystal structure of c-terminal domain of putative periplasmic protein ydgh from s. enterica
Total Genus 13
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
68
structure length
65
Chain Sequence
KVEELNKATAAMMVPFDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQWQENITISADLYK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural genomics, unknown function
molecule keywords Putative periplasmic protein ydgH
publication title Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO.
pubmed doi rcsb
source organism Salmonella enterica subsp. enterica serovar typhimurium
total genus 13
structure length 65
sequence length 68
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07338 DUF1471 Protein of unknown function (DUF1471)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1660.10 Alpha Beta 2-Layer Sandwich Dodecin subunit-like Flavin-binding protein dodecin 4evuA00
2VKFA 2V21A 2YJ0A 2MA4A 2CIFA 1MOGA 2M2JA 2UX9A 2DEHA 2VX9A 2MA8A 2V19A 2DEVA 2CC7A 3OQTA 2VKGA 4B2HA 2DEGA 2JNAA 2VYXA 3ONRA 2CC8A 4B2MA 2VXAA 4B2KA 4B2JA 4EVUA 2V18A 2CC9A 2NOCA 2CIEA 2CC6A 2CJCA 2CZ8A 2CCCA 2YIZA 2CCBA
chains in the Genus database with same CATH superfamily
2VKFA 2V21A 2YJ0A 2MA4A 2CIFA 1MOGA 2M2JA 2UX9A 2DEHA 2VX9A 2MA8A 2V19A 2DEVA 2CC7A 3OQTA 2VKGA 2JZ7A 4B2HA 2DEGA 2JNAA 2VYXA 3ONRA 2CC8A 4B2MA 2VXAA 4B2KA 4B2JA 4EVUA 2V18A 2CC9A 2NOCA 2CIEA 1RGXA 2CC6A 1RH7A 1RFXA 2CJCA 2CZ8A 3W1EA 2CCCA 2YIZA 2CCBA
chains in the Genus database with same CATH topology
2VKFA 2V21A 2YJ0A 2MA4A 2CIFA 1MOGA 2M2JA 2UX9A 2DEHA 2VX9A 2MA8A 2V19A 2DEVA 2CC7A 3OQTA 2VKGA 4B2HA 2DEGA 2JNAA 2VYXA 3ONRA 2CC8A 4B2MA 2VXAA 4B2KA 4B2JA 4EVUA 2V18A 2CC9A 2NOCA 2CIEA 2CC6A 2CJCA 2CZ8A 2CCCA 2YIZA 2CCBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VKF A;  2V21 A;  2YJ0 A;  2MA4 A;  2CIF A;  1MOG A;  2M2J A;  2UX9 A;  2DEH A;  2VX9 A;  2MA8 A;  2V19 A;  2DEV A;  2CC7 A;  3OQT A;  2VKG A;  4B2H A;  2DEG A;  2JNA A;  2VYX A;  3ONR A;  2CC8 A;  4B2M A;  2VXA A;  4B2K A;  4B2J A;  4EVU A;  2V18 A;  2CC9 A;  2NOC A;  2CIE A;  2CC6 A;  2CJC A;  2CZ8 A;  2CCC A;  2YIZ A;  2CCB A; 
#chains in the Genus database with same CATH topology
 2VKF A;  2V21 A;  2YJ0 A;  2MA4 A;  2CIF A;  1MOG A;  2M2J A;  2UX9 A;  2DEH A;  2VX9 A;  2MA8 A;  2V19 A;  2DEV A;  2CC7 A;  3OQT A;  2VKG A;  2JZ7 A;  4B2H A;  2DEG A;  2JNA A;  2VYX A;  3ONR A;  2CC8 A;  4B2M A;  2VXA A;  4B2K A;  4B2J A;  4EVU A;  2V18 A;  2CC9 A;  2NOC A;  2CIE A;  1RGX A;  2CC6 A;  1RH7 A;  1RFX A;  2CJC A;  2CZ8 A;  3W1E A;  2CCC A;  2YIZ A;  2CCB A; 
#chains in the Genus database with same CATH homology
 2VKF A;  2V21 A;  2YJ0 A;  2MA4 A;  2CIF A;  1MOG A;  2M2J A;  2UX9 A;  2DEH A;  2VX9 A;  2MA8 A;  2V19 A;  2DEV A;  2CC7 A;  3OQT A;  2VKG A;  4B2H A;  2DEG A;  2JNA A;  2VYX A;  3ONR A;  2CC8 A;  4B2M A;  2VXA A;  4B2K A;  4B2J A;  4EVU A;  2V18 A;  2CC9 A;  2NOC A;  2CIE A;  2CC6 A;  2CJC A;  2CZ8 A;  2CCC A;  2YIZ A;  2CCB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...