4EVVA

Mouse mbd4 glycosylase domain in complex with a g:t mismatch
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
145
structure length
145
Chain Sequence
MKWTPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPENHKLNKYHDWLWENHEKLSLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
source organism Mus musculus
publication title Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
pubmed doi rcsb
molecule keywords Methyl-CpG-binding domain protein 4
total genus 41
structure length 145
sequence length 145
ec nomenclature ec 3.2.2.-:
pdb deposition date 2012-04-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4evvA00
4AI5A 5KN8A 1ORNA 1M3QA 1MUYA 1EBMA 1P7MA 1M3HA 1KG6A 3CWAA 2JG6A 2ABKA 3I0XA 2NOEA 1P59A 1MUNA 4UNFA 2NOFA 1XQOA 4B22A 3S6IA 2JHNA 4E9FA 2I5WA 1NKUA 3OGDA 2JHJA 1DIZA 1KQJA 1LWWA 4YOQA 1ORPA 3FHFA 4EW0A 4OFAA 1KO9A 3I0WA 1KG3A 4UOBA 3CVTA 1KEAA 2OFKA 1PU8A 5DPKA 1YQRA 1LWVA 1KG4A 2XHIA 3D4VA 1XG7A 4EA4A 1MUDA 1N39A 3F0ZA 3FSPA 2NOBA 4E9GA 1KG7A 3N5NX 1FN7A 4B23A 3G0QA 2YG8A 4E9HA 3IHOA 3N0UA 1YQKA 5AN4A 4DK9A 1LMZA 4OFEA 4EW4A 1KG5A 1N3CA 3CWTA 1YQMA 3FHGA 3CWUA 1VRLA 1KG2A 3CWSA 3CVSA 1N3AA 1WEFA 4PIIA 1PVSA 2OFIA 2NOLA 4B21A 4YPRA 4HSBA 4AIAA 2NOZA 4OFHA 1WEIA 4B24A 4EJZA 1RRSA 3KTUA 4AI4A 5KN9A 4EVVA 1HU0A 2YG9A 5CHZA 4EA5A 3IH7A 2H56A 4E9EA 1PU7A 2NOHA 1LWYA 1PU6A 3F10A 1XQPA 3OH9A 4YPHA 1WEGA 2NOIA 1YQLA 1RRQA 3CW7A 3KNTA 1MPGA 4EJYA 1NGNA 3OH6A
chains in the Genus database with same CATH superfamily
3OYLA 3OYJA 4AI5A 5KN8A 1ORNA 1M3QA 1MUYA 4E7LA 1EBMA 1P7MA 1M3HA 1KG6A 3CWAA 2JG6A 2ABKA 4IKFA 3OYCA 3I0XA 2NOEA 4ZTFA 1P59A 1MUNA 2JPSA 4UNFA 2V75A 1XQOA 4B22A 3S6IA 2NOFA 2JHNA 4E9FA 2I5WA 3NNQA 3OYKA 5FRMA 1NKUA 3L2VA 3OGDA 3OS0A 2JHJA 3S3NA 1DIZA 1KQJA 3OY9A 1LWWA 4YOQA 1ORPA 3OS1A 3OYDA 4E7KA 3FHFA 4EW0A 2W04A 4OFAA 1KO9A 5FROA 3I0WA 2W03A 3S3MA 3R2XC 4EJYA 1KG3A 4UOBA 3CVTA 1KEAA 2OFKA 1PU8A 5DPKA 3OYMA 1YQRA 1LWVA 1KG4A 2XHIA 3D4VA 1XG7A 4EA4A 3S3OA 1MUDA 1N39A 3F0ZA 3OYFA 3FSPA 2NOBA 4E9GA 1KG7A 3N5NX 1FN7A 4B23A 3G0QA 4E7HA 3L2WA 2YG8A 4E9HA 3OYIA 3IHOA 3N0UA 1YQKA 5AN4A 4DK9A 1LMZA 4OFEA 4BDZA 4EW4A 1KG5A 1N3CA 3CWTA 1YQMA 3FHGA 3CWUA 1VRLA 1KG2A 3CWSA 3L2QA 3CVSA 3OYHA 4E7IA 3VW4A 3L2RA 1N3AA 1WEFA 4NZGA 4PIIA 4BE2A 1PVSA 3OS2A 2OFIA 3OYAA 2NOLA 4B21A 4YPRA 4HSBA 4AIAA 4BE0A 4ZTJA 2NOZA 4OFHA 1WEIA 4B24A 4BE1A 3OYGA 1RRSA 3L2UA 3OYEA 4BDYA 3KTUA 4EJZA 5FRNA 4AI4A 5KN9A 4E7JA 4EVVA 1HU0A 2YG9A 5CHZA 4EA5A 3IH7A 2H56A 4E9EA 1PU7A 2NOHA 1LWYA 1PU6A 3F10A 1XQPA 3LCNA 3OH9A 4YPHA 1WEGA 2NOIA 4BACA 3OYBA 1YQLA 1U84A 1RRQA 3CW7A 3KNTA 1MPGA 3OYNA 1NGNA 3OH6A
chains in the Genus database with same CATH topology
4AI5A 5KN8A 1ORNA 1M3QA 1MUYA 1EBMA 1P7MA 1M3HA 1KG6A 3CWAA 2JG6A 2ABKA 3I0XA 2NOEA 1P59A 1MUNA 4UNFA 2NOFA 1XQOA 4B22A 3S6IA 2JHNA 4E9FA 2I5WA 1NKUA 3OGDA 2JHJA 1DIZA 1KQJA 1LWWA 4YOQA 1ORPA 3FHFA 4EW0A 4OFAA 1KO9A 3I0WA 1KG3A 4UOBA 3CVTA 1KEAA 2OFKA 1PU8A 5DPKA 1YQRA 1LWVA 1KG4A 2XHIA 3D4VA 1XG7A 4EA4A 1MUDA 1N39A 3F0ZA 3FSPA 2NOBA 4E9GA 1KG7A 3N5NX 1FN7A 4B23A 3G0QA 2YG8A 4E9HA 3IHOA 3N0UA 1YQKA 5AN4A 4DK9A 1LMZA 4OFEA 4EW4A 1KG5A 1N3CA 3CWTA 1YQMA 3FHGA 3CWUA 1VRLA 1KG2A 3CWSA 3CVSA 1N3AA 1WEFA 4PIIA 1PVSA 2OFIA 2NOLA 4B21A 4YPRA 4HSBA 4AIAA 2NOZA 4OFHA 1WEIA 4B24A 4EJZA 1RRSA 3KTUA 4AI4A 5KN9A 4EVVA 1HU0A 2YG9A 5CHZA 4EA5A 3IH7A 2H56A 4E9EA 1PU7A 2NOHA 1LWYA 1PU6A 3F10A 1XQPA 3OH9A 4YPHA 1WEGA 2NOIA 1YQLA 1RRQA 3CW7A 3KNTA 1MPGA 4EJYA 1NGNA 3OH6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AI5 A;  5KN8 A;  1ORN A;  1M3Q A;  1MUY A;  1EBM A;  1P7M A;  1M3H A;  1KG6 A;  3CWA A;  2JG6 A;  2ABK A;  3I0X A;  2NOE A;  1P59 A;  1MUN A;  4UNF A;  2NOF A;  1XQO A;  4B22 A;  3S6I A;  2JHN A;  4E9F A;  2I5W A;  1NKU A;  3OGD A;  2JHJ A;  1DIZ A;  1KQJ A;  1LWW A;  4YOQ A;  1ORP A;  3FHF A;  4EW0 A;  4OFA A;  1KO9 A;  3I0W A;  1KG3 A;  4UOB A;  3CVT A;  1KEA A;  2OFK A;  1PU8 A;  5DPK A;  1YQR A;  1LWV A;  1KG4 A;  2XHI A;  3D4V A;  1XG7 A;  4EA4 A;  1MUD A;  1N39 A;  3F0Z A;  3FSP A;  2NOB A;  4E9G A;  1KG7 A;  3N5N X;  1FN7 A;  4B23 A;  3G0Q A;  2YG8 A;  4E9H A;  3IHO A;  3N0U A;  1YQK A;  5AN4 A;  4DK9 A;  1LMZ A;  4OFE A;  4EW4 A;  1KG5 A;  1N3C A;  3CWT A;  1YQM A;  3FHG A;  3CWU A;  1VRL A;  1KG2 A;  3CWS A;  3CVS A;  1N3A A;  1WEF A;  4PII A;  1PVS A;  2OFI A;  2NOL A;  4B21 A;  4YPR A;  4HSB A;  4AIA A;  2NOZ A;  4OFH A;  1WEI A;  4B24 A;  4EJZ A;  1RRS A;  3KTU A;  4AI4 A;  5KN9 A;  4EVV A;  1HU0 A;  2YG9 A;  5CHZ A;  4EA5 A;  3IH7 A;  2H56 A;  4E9E A;  1PU7 A;  2NOH A;  1LWY A;  1PU6 A;  3F10 A;  1XQP A;  3OH9 A;  4YPH A;  1WEG A;  2NOI A;  1YQL A;  1RRQ A;  3CW7 A;  3KNT A;  1MPG A;  4EJY A;  1NGN A;  3OH6 A; 
#chains in the Genus database with same CATH topology
 3OYL A;  3OYJ A;  4AI5 A;  5KN8 A;  1ORN A;  1M3Q A;  1MUY A;  4E7L A;  1EBM A;  1P7M A;  1M3H A;  1KG6 A;  3CWA A;  2JG6 A;  2ABK A;  4IKF A;  3OYC A;  3I0X A;  2NOE A;  4ZTF A;  1P59 A;  1MUN A;  2JPS A;  4UNF A;  2V75 A;  1XQO A;  4B22 A;  3S6I A;  2NOF A;  2JHN A;  4E9F A;  2I5W A;  3NNQ A;  3OYK A;  5FRM A;  1NKU A;  3L2V A;  3OGD A;  3OS0 A;  2JHJ A;  3S3N A;  1DIZ A;  1KQJ A;  3OY9 A;  1LWW A;  4YOQ A;  1ORP A;  3OS1 A;  3OYD A;  4E7K A;  3FHF A;  4EW0 A;  2W04 A;  4OFA A;  1KO9 A;  5FRO A;  3I0W A;  2W03 A;  3S3M A;  3R2X C;  4EJY A;  1KG3 A;  4UOB A;  3CVT A;  1KEA A;  2OFK A;  1PU8 A;  5DPK A;  3OYM A;  1YQR A;  1LWV A;  1KG4 A;  2XHI A;  3D4V A;  1XG7 A;  4EA4 A;  3S3O A;  1MUD A;  1N39 A;  3F0Z A;  3OYF A;  3FSP A;  2NOB A;  4E9G A;  1KG7 A;  3N5N X;  1FN7 A;  4B23 A;  3G0Q A;  4E7H A;  3L2W A;  2YG8 A;  4E9H A;  3OYI A;  3IHO A;  3N0U A;  1YQK A;  5AN4 A;  4DK9 A;  1LMZ A;  4OFE A;  4BDZ A;  4EW4 A;  1KG5 A;  1N3C A;  3CWT A;  1YQM A;  3FHG A;  3CWU A;  1VRL A;  1KG2 A;  3CWS A;  3L2Q A;  3CVS A;  3OYH A;  4E7I A;  3VW4 A;  3L2R A;  1N3A A;  1WEF A;  4NZG A;  4PII A;  4BE2 A;  1PVS A;  3OS2 A;  2OFI A;  3OYA A;  2NOL A;  4B21 A;  4YPR A;  4HSB A;  4AIA A;  4BE0 A;  4ZTJ A;  2NOZ A;  4OFH A;  1WEI A;  4B24 A;  4BE1 A;  3OYG A;  1RRS A;  3L2U A;  3OYE A;  4BDY A;  3KTU A;  4EJZ A;  5FRN A;  4AI4 A;  5KN9 A;  4E7J A;  4EVV A;  1HU0 A;  2YG9 A;  5CHZ A;  4EA5 A;  3IH7 A;  2H56 A;  4E9E A;  1PU7 A;  2NOH A;  1LWY A;  1PU6 A;  3F10 A;  1XQP A;  3LCN A;  3OH9 A;  4YPH A;  1WEG A;  2NOI A;  4BAC A;  3OYB A;  1YQL A;  1U84 A;  1RRQ A;  3CW7 A;  3KNT A;  1MPG A;  3OYN A;  1NGN A;  3OH6 A; 
#chains in the Genus database with same CATH homology
 4AI5 A;  5KN8 A;  1ORN A;  1M3Q A;  1MUY A;  1EBM A;  1P7M A;  1M3H A;  1KG6 A;  3CWA A;  2JG6 A;  2ABK A;  3I0X A;  2NOE A;  1P59 A;  1MUN A;  4UNF A;  2NOF A;  1XQO A;  4B22 A;  3S6I A;  2JHN A;  4E9F A;  2I5W A;  1NKU A;  3OGD A;  2JHJ A;  1DIZ A;  1KQJ A;  1LWW A;  4YOQ A;  1ORP A;  3FHF A;  4EW0 A;  4OFA A;  1KO9 A;  3I0W A;  1KG3 A;  4UOB A;  3CVT A;  1KEA A;  2OFK A;  1PU8 A;  5DPK A;  1YQR A;  1LWV A;  1KG4 A;  2XHI A;  3D4V A;  1XG7 A;  4EA4 A;  1MUD A;  1N39 A;  3F0Z A;  3FSP A;  2NOB A;  4E9G A;  1KG7 A;  3N5N X;  1FN7 A;  4B23 A;  3G0Q A;  2YG8 A;  4E9H A;  3IHO A;  3N0U A;  1YQK A;  5AN4 A;  4DK9 A;  1LMZ A;  4OFE A;  4EW4 A;  1KG5 A;  1N3C A;  3CWT A;  1YQM A;  3FHG A;  3CWU A;  1VRL A;  1KG2 A;  3CWS A;  3CVS A;  1N3A A;  1WEF A;  4PII A;  1PVS A;  2OFI A;  2NOL A;  4B21 A;  4YPR A;  4HSB A;  4AIA A;  2NOZ A;  4OFH A;  1WEI A;  4B24 A;  4EJZ A;  1RRS A;  3KTU A;  4AI4 A;  5KN9 A;  4EVV A;  1HU0 A;  2YG9 A;  5CHZ A;  4EA5 A;  3IH7 A;  2H56 A;  4E9E A;  1PU7 A;  2NOH A;  1LWY A;  1PU6 A;  3F10 A;  1XQP A;  3OH9 A;  4YPH A;  1WEG A;  2NOI A;  1YQL A;  1RRQ A;  3CW7 A;  3KNT A;  1MPG A;  4EJY A;  1NGN A;  3OH6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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