4EZVA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pr-bombesin in space group p21212
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
219
structure length
219
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes
rcsb
source organism Escherichia coli
total genus 65
structure length 219
sequence length 219
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezvA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezvA01
3OHXM 4H6HA 4R5LA 3T49A 4EZQA 1CKRA 4R5IA 4H6IA 2V7YA 1DKZA 3L3OM 4JNEA 1BPRA 3DPOA 4EZWA 3DOBA 4HY9A 4EZPA 3T47A 3N8EA 3DPPA 4JN4A 4HYBA 5E84A 3QNJA 5TKYA 4B9QA 3T4AG 4EZUA 4EZYA 4PO2A 4EZVA 3DQGA 4WV5A 4EZTA 2QXLA 4EZXA 1DG4A 7HSCA 2BPRA 4EZOA 4FL9A 4EZZA 4WV7A 4R5GA 2KHOA 2QFFA 1Q5LA 4EZRA 4JWEA 1DKYA 1DKXA 3D2FA 4JNFA 4JWCA 4JWIA 3DPQA 3T48A 2OP6A 3C7NB 3T46A 2WINM 4E81A 4F01A 3H0XA 4R5JA 1YUWA 4EZNA 4JWDA 4EZSA 4R5KA 3C7NA 4F00A 3D2EA 1U00A
chains in the Genus database with same CATH superfamily
3BLBA 2PMRA 3D4YA 2OW6A 2Z8YA 2YLAA 5TKYA 1GNLA 3DX1A 1OA1A 4H8SA 4EZXA 1DG4A 3SBTB 3DX2A 3CV5A 4AZIA 4AZ6A 3I01A 4JWEA 4D8JA 4IWOA 3DOBA 3BUPA 3Q84A 4HYBA 1I4LA 3D51A 3A98A 2X3XA 1SUFA 3HAHA 1GN9A 1DKXA 4JWCA 4AZGA 3T46A 3BUDA 2F7QA 3BVTA 2C08A 4ILIA 3B52X 3RV0A 2RAJA 2YL6A 1W9MA 2EWFA 2YI8A 4I1QA 2ALWA 2BPRA 3HAJA 2LXYA 3BUQA 3BVVA 2FYVA 4KIKB 1HWWA 3H0XA 2F7OA 1ZYLA 3O3NB 1MJGA 1O7DB 2F1BA 3DX3A 4EZWA 4UDYX 3CVRA 3EJPA 3EJUA 4ATMA 3GI7A 4JLCA 3FD9A 3UITA 4EZTA 4AVMA 1Y2OA 2F18A 2MI7A 2Z0OA 3HAIA 4R5GA 2KHOA 2GF4A 2OP6A 1URUA 1JQKA 3I39X 2F7PA 1O7DC 4R5JA 3N8EA 3D52A 1DKZA 4IM0A 3T47A 1R33A 1TQTA 1GNTA 4WV7A 2EFLA 3DX4A 4JWIA 1YUWA 3OWGA 3O3MB 3ER9B 1QWUA 2FICA 1TQWA 4EZVA 4WV5A 2Z0NA 4G6QA 2WYHA 2RT6A 2GAFD 2ND0A 3EJTA 3C7NB 2OZNB 1SU6A 2Z0VA 4AZHA 1E9VA 4AZCB 1BPRA 5C5BA 3M3WA 4NPHA 4MQDA 3CZNA 3SYVA 1OAOA 4JL9A 4IWPA 2YIBA 4JWDA 4HR1A 3VEAA 5FIGA 4ILGA 2OW7A 4EZZA 4AZBA 2GA9D 3I2WA 5FLEX 3ERCC 2F1AA 3BVUA 2V7YA 3ABHA 4H6IA 3EJSA 2D4CA 4DCNC 4NSWA 1SU7A 1WDZA 3F7WA 4EZPA 4WPCA 2RAKA 4FL9A 2YL5A 3ACOA 2YIAA 2YI9A 3B53X 3D2FA 3DPQA 2OO2A 3ZEFA 1QX1A 7HSCA 4HY9A 1SU8A 2YLLA 1TQSA 4FZSA 1R5EA 4FZPA 1ZWWA 3OK8A 4EZRA 3DDGA 3RPMA 3T48A 1I49A 3L3OM 1PS3A 2OBMA 3QA8A 2NCZA 3QNJA 4EZUA 3I04A 3QWEA 2QXLA 3RV1A 1Q5LA 2Q13A 3O3OB 2Q12A 4JNFA 4IM3A 3CZSA 4R5IA 4BNEA 4KIKA 1CKRA 3Q0KA 2D1LA 4E3CA 2X3WA 2ZXQA 2PY6A 1TQVA 3ZEDA 3CAZA 3DPPA 4PO2A 1LQ7A 3T4AG 3KAVA 3EJRA 3SOGA 2JNSA 3QE6A 3G9GA 4R5KA 1U00A 3QNIA 4UDXX 3T49A 2YIVX 3B51X 3LMFA 4FZOA 3DYTA 3DDFA 3D50A 3ER8C 1QWNA 5KBPA 3VEBA 2X3VA 1X03A 1YWMA 2QFFA 4M0MA 2EFKA 1DKYA 4IW0A 4F01A 4DYLA 1I4DA 3OHXM 4H6HA 4AZ7A 2YL8A 1HXKA 2X5CA 4JN4A 5E84A 4EZYA 3LLLA 1E1DA 3KDRA 4EZOA 3PLTA 3BVXA 4EZNA 2V0OA 4EZSA 5C5BB 3C7NA 1R34A 4AKVA 4R5LA 4ILHB 3KAWA 1X04A 1OA0A 1E2UA 3BVWA 4IM2A 4AZCA 1UPXA 2QKWA 3CKDA 4AZ5A 2YKTA 3L3PA 4I43A 2O0I1 1I4TA 4HR1B 1TQUA 3D4ZA 4E81A 3BUBA 2YL9A 4IWQA 4F00A 4B9QA 2F7RA 2OBLA 4EZQA 4JNEA 3DPOA 2JNKA 3EJQA 2LM0A 1HTYA 3LVTA 3DQGA 3VKHA 2EX3B 2N3KA 3DX0A 2ELBA 2RAIA 4FM3A 3SBSA 4NQIA 2WINM 3BUIA 2ND1A 4WPEA 2WYIA 3D2EA
chains in the Genus database with same CATH topology
3T49A 4UDXX 2V7YA 4H6IA 2YIVX 1DKZA 4IM0A 3B51X 3LMFA 1SU7A 3F7WA 4EZPA 3T47A 2Z8YA 5TKYA 3ER8C 1GNLA 3VEBA 1OA1A 4EZXA 1DG4A 3SBTB 1GNTA 4FL9A 4WV7A 2YIAA 2YI9A 2QFFA 3B53X 3I01A 4M0MA 4JWEA 1DKYA 3D2FA 4JWIA 3DPQA 4IW0A 3ZEFA 4F01A 1YUWA 3OWGA 7HSCA 4HY9A 3OHXM 4H6HA 1SU8A 3O3MB 4D8JA 3ER9B 4IWOA 3DOBA 2X5CA 4JN4A 4HYBA 5E84A 4EZYA 4EZVA 4WV5A 1E1DA 4G6QA 3A98A 3KDRA 2RT6A 2GAFD 4EZOA 2ND0A 1SUFA 4EZRA 1GN9A 1DKXA 4JWCA 3T48A 3C7NB 3T46A 4EZNA 4EZSA 3C7NA 1SU6A 4R5LA 4ILIA 4ILHB 1E9VA 3L3OM 1BPRA 3B52X 3KAWA 4NPHA 3RV0A 1OA0A 4MQDA 2OBMA 3QA8A 2NCZA 1E2UA 4IM2A 3QNJA 1W9MA 4EZUA 2EWFA 2YI8A 3I04A 2QXLA 1UPXA 2BPRA 1OAOA 3RV1A 1Q5LA 3O3OB 4IM3A 4JNFA 4JL9A 4KIKB 4I43A 4HR1B 4E81A 3H0XA 1ZYLA 4IWPA 3O3NB 2YIBA 4JWDA 4IWQA 4R5IA 1MJGA 4F00A 4KIKA 4B9QA 2OBLA 4EZQA 1CKRA 4HR1A 4E3CA 4JNEA 3DPOA 4EZWA 2PY6A 4UDYX 3VEAA 3ZEDA 3DPPA 3GI7A 4JLCA 5FIGA 4PO2A 2LM0A 3T4AG 3KAVA 3DQGA 3FD9A 3UITA 4ILGA 4EZTA 3VKHA 2EX3B 2N3KA 4EZZA 4R5GA 2KHOA 2JNSA 4FM3A 2OP6A 3SBSA 1JQKA 2GA9D 2WINM 3I39X 4R5JA 5FLEX 2ND1A 3ERCC 4R5KA 3N8EA 3D2EA 1U00A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OHX M;  4H6H A;  4R5L A;  3T49 A;  4EZQ A;  1CKR A;  4R5I A;  4H6I A;  2V7Y A;  1DKZ A;  3L3O M;  4JNE A;  1BPR A;  3DPO A;  4EZW A;  3DOB A;  4HY9 A;  4EZP A;  3T47 A;  3N8E A;  3DPP A;  4JN4 A;  4HYB A;  5E84 A;  3QNJ A;  5TKY A;  4B9Q A;  3T4A G;  4EZU A;  4EZY A;  4PO2 A;  4EZV A;  3DQG A;  4WV5 A;  4EZT A;  2QXL A;  4EZX A;  1DG4 A;  7HSC A;  2BPR A;  4EZO A;  4FL9 A;  4EZZ A;  4WV7 A;  4R5G A;  2KHO A;  2QFF A;  1Q5L A;  4EZR A;  4JWE A;  1DKY A;  1DKX A;  3D2F A;  4JNF A;  4JWC A;  4JWI A;  3DPQ A;  3T48 A;  2OP6 A;  3C7N B;  3T46 A;  2WIN M;  4E81 A;  4F01 A;  3H0X A;  4R5J A;  1YUW A;  4EZN A;  4JWD A;  4EZS A;  4R5K A;  3C7N A;  4F00 A;  3D2E A;  1U00 A; 
#chains in the Genus database with same CATH topology
 3BLB A;  2PMR A;  3D4Y A;  2OW6 A;  2Z8Y A;  2YLA A;  5TKY A;  1GNL A;  3DX1 A;  1OA1 A;  4H8S A;  4EZX A;  1DG4 A;  3SBT B;  3DX2 A;  3CV5 A;  4AZI A;  4AZ6 A;  3I01 A;  4JWE A;  4D8J A;  4IWO A;  3DOB A;  3BUP A;  3Q84 A;  4HYB A;  1I4L A;  3D51 A;  3A98 A;  2X3X A;  1SUF A;  3HAH A;  1GN9 A;  1DKX A;  4JWC A;  4AZG A;  3T46 A;  3BUD A;  2F7Q A;  3BVT A;  2C08 A;  4ILI A;  3B52 X;  3RV0 A;  2RAJ A;  2YL6 A;  1W9M A;  2EWF A;  2YI8 A;  4I1Q A;  2ALW A;  2BPR A;  3HAJ A;  2LXY A;  3BUQ A;  3BVV A;  2FYV A;  4KIK B;  1HWW A;  3H0X A;  2F7O A;  1ZYL A;  3O3N B;  1MJG A;  1O7D B;  2F1B A;  3DX3 A;  4EZW A;  4UDY X;  3CVR A;  3EJP A;  3EJU A;  4ATM A;  3GI7 A;  4JLC A;  3FD9 A;  3UIT A;  4EZT A;  4AVM A;  1Y2O A;  2F18 A;  2MI7 A;  2Z0O A;  3HAI A;  4R5G A;  2KHO A;  2GF4 A;  2OP6 A;  1URU A;  1JQK A;  3I39 X;  2F7P A;  1O7D C;  4R5J A;  3N8E A;  3D52 A;  1DKZ A;  4IM0 A;  3T47 A;  1R33 A;  1TQT A;  1GNT A;  4WV7 A;  2EFL A;  3DX4 A;  4JWI A;  1YUW A;  3OWG A;  3O3M B;  3ER9 B;  1QWU A;  2FIC A;  1TQW A;  4EZV A;  4WV5 A;  2Z0N A;  4G6Q A;  2WYH A;  2RT6 A;  2GAF D;  2ND0 A;  3EJT A;  3C7N B;  2OZN B;  1SU6 A;  2Z0V A;  4AZH A;  1E9V A;  4AZC B;  1BPR A;  5C5B A;  3M3W A;  4NPH A;  4MQD A;  3CZN A;  3SYV A;  1OAO A;  4JL9 A;  4IWP A;  2YIB A;  4JWD A;  4HR1 A;  3VEA A;  5FIG A;  4ILG A;  2OW7 A;  4EZZ A;  4AZB A;  2GA9 D;  3I2W A;  5FLE X;  3ERC C;  2F1A A;  3BVU A;  2V7Y A;  3ABH A;  4H6I A;  3EJS A;  2D4C A;  4DCN C;  4NSW A;  1SU7 A;  1WDZ A;  3F7W A;  4EZP A;  4WPC A;  2RAK A;  4FL9 A;  2YL5 A;  3ACO A;  2YIA A;  2YI9 A;  3B53 X;  3D2F A;  3DPQ A;  2OO2 A;  3ZEF A;  1QX1 A;  7HSC A;  4HY9 A;  1SU8 A;  2YLL A;  1TQS A;  4FZS A;  1R5E A;  4FZP A;  1ZWW A;  3OK8 A;  4EZR A;  3DDG A;  3RPM A;  3T48 A;  1I49 A;  3L3O M;  1PS3 A;  2OBM A;  3QA8 A;  2NCZ A;  3QNJ A;  4EZU A;  3I04 A;  3QWE A;  2QXL A;  3RV1 A;  1Q5L A;  2Q13 A;  3O3O B;  2Q12 A;  4JNF A;  4IM3 A;  3CZS A;  4R5I A;  4BNE A;  4KIK A;  1CKR A;  3Q0K A;  2D1L A;  4E3C A;  2X3W A;  2ZXQ A;  2PY6 A;  1TQV A;  3ZED A;  3CAZ A;  3DPP A;  4PO2 A;  1LQ7 A;  3T4A G;  3KAV A;  3EJR A;  3SOG A;  2JNS A;  3QE6 A;  3G9G A;  4R5K A;  1U00 A;  3QNI A;  4UDX X;  3T49 A;  2YIV X;  3B51 X;  3LMF A;  4FZO A;  3DYT A;  3DDF A;  3D50 A;  3ER8 C;  1QWN A;  5KBP A;  3VEB A;  2X3V A;  1X03 A;  1YWM A;  2QFF A;  4M0M A;  2EFK A;  1DKY A;  4IW0 A;  4F01 A;  4DYL A;  1I4D A;  3OHX M;  4H6H A;  4AZ7 A;  2YL8 A;  1HXK A;  2X5C A;  4JN4 A;  5E84 A;  4EZY A;  3LLL A;  1E1D A;  3KDR A;  4EZO A;  3PLT A;  3BVX A;  4EZN A;  2V0O A;  4EZS A;  5C5B B;  3C7N A;  1R34 A;  4AKV A;  4R5L A;  4ILH B;  3KAW A;  1X04 A;  1OA0 A;  1E2U A;  3BVW A;  4IM2 A;  4AZC A;  1UPX A;  2QKW A;  3CKD A;  4AZ5 A;  2YKT A;  3L3P A;  4I43 A;  2O0I 1;  1I4T A;  4HR1 B;  1TQU A;  3D4Z A;  4E81 A;  3BUB A;  2YL9 A;  4IWQ A;  4F00 A;  4B9Q A;  2F7R A;  2OBL A;  4EZQ A;  4JNE A;  3DPO A;  2JNK A;  3EJQ A;  2LM0 A;  1HTY A;  3LVT A;  3DQG A;  3VKH A;  2EX3 B;  2N3K A;  3DX0 A;  2ELB A;  2RAI A;  4FM3 A;  3SBS A;  4NQI A;  2WIN M;  3BUI A;  2ND1 A;  4WPE A;  2WYI A;  3D2E A; 
#chains in the Genus database with same CATH homology
 3T49 A;  4UDX X;  2V7Y A;  4H6I A;  2YIV X;  1DKZ A;  4IM0 A;  3B51 X;  3LMF A;  1SU7 A;  3F7W A;  4EZP A;  3T47 A;  2Z8Y A;  5TKY A;  3ER8 C;  1GNL A;  3VEB A;  1OA1 A;  4EZX A;  1DG4 A;  3SBT B;  1GNT A;  4FL9 A;  4WV7 A;  2YIA A;  2YI9 A;  2QFF A;  3B53 X;  3I01 A;  4M0M A;  4JWE A;  1DKY A;  3D2F A;  4JWI A;  3DPQ A;  4IW0 A;  3ZEF A;  4F01 A;  1YUW A;  3OWG A;  7HSC A;  4HY9 A;  3OHX M;  4H6H A;  1SU8 A;  3O3M B;  4D8J A;  3ER9 B;  4IWO A;  3DOB A;  2X5C A;  4JN4 A;  4HYB A;  5E84 A;  4EZY A;  4EZV A;  4WV5 A;  1E1D A;  4G6Q A;  3A98 A;  3KDR A;  2RT6 A;  2GAF D;  4EZO A;  2ND0 A;  1SUF A;  4EZR A;  1GN9 A;  1DKX A;  4JWC A;  3T48 A;  3C7N B;  3T46 A;  4EZN A;  4EZS A;  3C7N A;  1SU6 A;  4R5L A;  4ILI A;  4ILH B;  1E9V A;  3L3O M;  1BPR A;  3B52 X;  3KAW A;  4NPH A;  3RV0 A;  1OA0 A;  4MQD A;  2OBM A;  3QA8 A;  2NCZ A;  1E2U A;  4IM2 A;  3QNJ A;  1W9M A;  4EZU A;  2EWF A;  2YI8 A;  3I04 A;  2QXL A;  1UPX A;  2BPR A;  1OAO A;  3RV1 A;  1Q5L A;  3O3O B;  4IM3 A;  4JNF A;  4JL9 A;  4KIK B;  4I43 A;  4HR1 B;  4E81 A;  3H0X A;  1ZYL A;  4IWP A;  3O3N B;  2YIB A;  4JWD A;  4IWQ A;  4R5I A;  1MJG A;  4F00 A;  4KIK A;  4B9Q A;  2OBL A;  4EZQ A;  1CKR A;  4HR1 A;  4E3C A;  4JNE A;  3DPO A;  4EZW A;  2PY6 A;  4UDY X;  3VEA A;  3ZED A;  3DPP A;  3GI7 A;  4JLC A;  5FIG A;  4PO2 A;  2LM0 A;  3T4A G;  3KAV A;  3DQG A;  3FD9 A;  3UIT A;  4ILG A;  4EZT A;  3VKH A;  2EX3 B;  2N3K A;  4EZZ A;  4R5G A;  2KHO A;  2JNS A;  4FM3 A;  2OP6 A;  3SBS A;  1JQK A;  2GA9 D;  2WIN M;  3I39 X;  4R5J A;  5FLE X;  2ND1 A;  3ERC C;  4R5K A;  3N8E A;  3D2E A;  1U00 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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