4F00A

Crystal structure of the substrate binding domain of e.coli dnak in complex with an apidaecin fragment from the bumblebee (residues 3 to 11)
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
219
structure length
219
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/immune system
source organism Escherichia coli
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
molecule keywords Chaperone protein DnaK
total genus 66
structure length 219
sequence length 219
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4f00A02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4f00A01
4EZVA 4R5KA 4R5GA 1BPRA 1DKZA 1DKYA 2BPRA 4EZZA 3C7NA 4R5IA 4EZUA 3DOBA 4EZXA 3H0XA 1DG4A 4EZQA 5E84A 3L3OM 4EZNA 3D2EA 3T47A 4F01A 1Q5LA 3DPQA 5TKYA 4JWEA 4WV7A 3DPOA 4EZPA 4EZTA 4EZOA 4E81A 4JWDA 3QNJA 4EZSA 3OHXM 4R5LA 3T4AG 3N8EA 2OP6A 1YUWA 2QFFA 1U00A 4HY9A 4JNFA 4JWCA 3D2FA 4JNEA 4H6HA 3T46A 4B9QA 4PO2A 2V7YA 3C7NB 4F00A 2KHOA 4JN4A 3T48A 3DPPA 4R5JA 3T49A 4EZYA 4JWIA 7HSCA 4HYBA 1DKXA 2WINM 4H6IA 1CKRA 4EZWA 4FL9A 4WV5A 4EZRA 3DQGA 2QXLA
chains in the Genus database with same CATH superfamily
4R5KA 4R5GA 3DDFA 4M0MA 3B51X 3RPMA 3DX2A 3G9GA 4HR1A 2X3XA 2ALWA 1QWNA 2OBMA 2OP6A 4DCNC 4G6QA 3BVVA 3BUBA 3SBSA 4JN4A 3T49A 3EJRA 1DKXA 3SOGA 4JLCA 4AZBA 2PMRA 3VEBA 1O7DB 2JNKA 1X04A 3ACOA 4WPEA 3T4AG 4JNFA 2F7RA 1SU8A 3T46A 3I01A 2YLLA 2YI9A 2WYIA 3BVUA 2BPRA 2EFLA 3OWGA 4H8SA 4AZ7A 1TQWA 4IM2A 4EZSA 2C08A 3B53X 1JQKA 3CZNA 1QX1A 3DPPA 3CV5A 3HAHA 2Q13A 2YI8A 2OZNB 4AZCB 2OO2A 3SBTB 3ER9B 1Q5LA 4JWEA 4EZPA 4EZTA 1R5EA 4AZ6A 2Q12A 1W9MA 3DX0A 4IM3A 2X5CA 3D4YA 1GN9A 4AZIA 2QXLA 2RAIA 3C7NA 3B52X 4AZGA 2OW6A 4EZQA 3D51A 4EZNA 1OA0A 3D2EA 3CVRA 4WV7A 3QNJA 1X03A 3O3MB 2YKTA 3I04A 1U00A 5C5BB 2X3VA 3VEAA 2F1BA 2ND1A 7HSCA 4H6IA 3EJPA 1R33A 3A98A 2LXYA 2WYHA 5E84A 2F7PA 3L3OM 3KAWA 4F01A 3LMFA 3DPQA 1I4DA 3LLLA 2EFKA 3ER8C 4IM0A 3GI7A 2D1LA 1I4TA 3QA8A 3DYTA 1TQVA 5KBPA 3CZSA 3CAZA 3D4ZA 2GAFD 3BUIA 4IWOA 5TKYA 4FZSA 1PS3A 4I1QA 4AKVA 1E9VA 2ND0A 3KDRA 1WDZA 2YL8A 1MJGA 4F00A 2N3KA 4EZRA 2PY6A 1HWWA 4EZZA 3DOBA 2F7QA 3UITA 4E3CA 3HAJA 1QWUA 3DPOA 2RAJA 4NQIA 3EJQA 3RV1A 3O3OB 2Z0OA 4H6HA 4PO2A 3LVTA 2WINM 1SUFA 3I2WA 3SYVA 4JL9A 2LM0A 1DKYA 3FD9A 4EZUA 4ILIA 2YL9A 2ZXQA 4EZOA 4E81A 3QE6A 3OHXM 3BLBA 1YUWA 2V0OA 4JWCA 4FL9A 2FICA 3BUPA 2V7YA 3T48A 4HR1B 2EX3B 4FZPA 1GNLA 3BVXA 1OAOA 1E2UA 3BUQA 3EJUA 3Q0KA 4KIKB 1HXKA 3PLTA 4I43A 3D2FA 2EWFA 1E1DA 4WV5A 3DQGA 4EZVA 3DDGA 3L3PA 4EZXA 2YL6A 4D8JA 3T47A 2JNSA 4JWDA 1I4LA 3BUDA 3EJTA 4AZCA 4NPHA 4R5LA 1O7DC 2O0I1 2YLAA 5FIGA 4NSWA 3M3WA 1TQTA 3ERCC 3BVTA 4ATMA 2GA9D 4UDXX 3D52A 2ELBA 1TQSA 3QNIA 3N8EA 1BPRA 3RV0A 4KIKA 1Y2OA 1GNTA 4JWIA 3ZEFA 4IW0A 4EZWA 4UDYX 1SU7A 3BVWA 5C5BA 1DKZA 3Q84A 1SU6A 4ILGA 1ZYLA 1URUA 2YIVX 4DYLA 2NCZA 4B9QA 3C7NB 3F7WA 2KHOA 1TQUA 4ILHB 3QWEA 3H0XA 4FM3A 1DG4A 2YIAA 2RT6A 3ABHA 3D50A 1OA1A 2Z0NA 4MQDA 3DX1A 4HY9A 4JNEA 2F18A 2X3WA 4FZOA 4R5JA 4HYBA 1LQ7A 2F1AA 4BNEA 3EJSA 1I49A 2Z0VA 2FYVA 1YWMA 2D4CA 2QFFA 3DX4A 5FLEX 4AVMA 2YL5A 3ZEDA 3I39X 4IWPA 3HAIA 3OK8A 2RAKA 1ZWWA 2YIBA 2OBLA 3O3NB 4R5IA 2QKWA 3KAVA 4IWQA 2F7OA 3DX3A 2Z8YA 1UPXA 1HTYA 4AZ5A 2MI7A 4WPCA 4EZYA 1CKRA 1R34A 3VKHA 3CKDA 4AZHA 2OW7A 2GF4A
chains in the Genus database with same CATH topology
2LM0A 4R5KA 4R5GA 1DKZA 1DKYA 4M0MA 3C7NA 3B52X 3B51X 3FD9A 4EZUA 4ILIA 4EZQA 1SU6A 4EZNA 4HR1A 1OA0A 1ZYLA 3D2EA 4ILGA 4WV7A 4EZOA 4E81A 3QNJA 3O3MB 2YIVX 2OBMA 3I04A 3OHXM 2OP6A 1YUWA 4JWCA 1U00A 4G6QA 2NCZA 4FL9A 4B9QA 2V7YA 3VEAA 3C7NB 3SBSA 3F7WA 2KHOA 4JN4A 3T48A 3T49A 2ND1A 7HSCA 1DKXA 4H6IA 4ILHB 4JLCA 4HR1B 3A98A 2EX3B 1GNLA 3VEBA 3H0XA 4FM3A 1DG4A 2YIAA 5E84A 2RT6A 3L3OM 3KAWA 4F01A 3LMFA 3DPQA 1OAOA 1E2UA 4KIKB 1OA1A 3ER8C 3T4AG 4MQDA 4IM0A 4JNFA 4HY9A 4I43A 3D2FA 4JNEA 1SU8A 3T46A 3GI7A 2EWFA 3I01A 1E1DA 4R5JA 3QA8A 4HYBA 2YI9A 4WV5A 3DQGA 4EZVA 2BPRA 4EZXA 2GAFD 4D8JA 3OWGA 3T47A 4IWOA 5TKYA 2JNSA 4JWDA 4IM2A 4EZSA 1E9VA 4NPHA 4R5LA 3B53X 1JQKA 2ND0A 2QFFA 5FIGA 5FLEX 3KDRA 1MJGA 4F00A 3DPPA 3ZEDA 2N3KA 3I39X 4IWPA 4EZRA 2PY6A 2YIBA 2OBLA 2YI8A 3O3NB 4EZZA 3ERCC 4R5IA 3DOBA 3KAVA 3SBTB 3UITA 4E3CA 3ER9B 1Q5LA 2GA9D 4IWQA 4JWEA 3DPOA 4UDXX 4EZTA 4EZPA 2Z8YA 1W9MA 3N8EA 1UPXA 1BPRA 3RV1A 4IM3A 3O3OB 4H6HA 3RV0A 4PO2A 2X5CA 4KIKA 1GNTA 4EZYA 1GN9A 1CKRA 4JWIA 2WINM 1SUFA 3ZEFA 4IW0A 4EZWA 3VKHA 4UDYX 4JL9A 2QXLA 1SU7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EZV A;  4R5K A;  4R5G A;  1BPR A;  1DKZ A;  1DKY A;  2BPR A;  4EZZ A;  3C7N A;  4R5I A;  4EZU A;  3DOB A;  4EZX A;  3H0X A;  1DG4 A;  4EZQ A;  5E84 A;  3L3O M;  4EZN A;  3D2E A;  3T47 A;  4F01 A;  1Q5L A;  3DPQ A;  5TKY A;  4JWE A;  4WV7 A;  3DPO A;  4EZP A;  4EZT A;  4EZO A;  4E81 A;  4JWD A;  3QNJ A;  4EZS A;  3OHX M;  4R5L A;  3T4A G;  3N8E A;  2OP6 A;  1YUW A;  2QFF A;  1U00 A;  4HY9 A;  4JNF A;  4JWC A;  3D2F A;  4JNE A;  4H6H A;  3T46 A;  4B9Q A;  4PO2 A;  2V7Y A;  3C7N B;  4F00 A;  2KHO A;  4JN4 A;  3T48 A;  3DPP A;  4R5J A;  3T49 A;  4EZY A;  4JWI A;  7HSC A;  4HYB A;  1DKX A;  2WIN M;  4H6I A;  1CKR A;  4EZW A;  4FL9 A;  4WV5 A;  4EZR A;  3DQG A;  2QXL A; 
#chains in the Genus database with same CATH topology
 4R5K A;  4R5G A;  3DDF A;  4M0M A;  3B51 X;  3RPM A;  3DX2 A;  3G9G A;  4HR1 A;  2X3X A;  2ALW A;  1QWN A;  2OBM A;  2OP6 A;  4DCN C;  4G6Q A;  3BVV A;  3BUB A;  3SBS A;  4JN4 A;  3T49 A;  3EJR A;  1DKX A;  3SOG A;  4JLC A;  4AZB A;  2PMR A;  3VEB A;  1O7D B;  2JNK A;  1X04 A;  3ACO A;  4WPE A;  3T4A G;  4JNF A;  2F7R A;  1SU8 A;  3T46 A;  3I01 A;  2YLL A;  2YI9 A;  2WYI A;  3BVU A;  2BPR A;  2EFL A;  3OWG A;  4H8S A;  4AZ7 A;  1TQW A;  4IM2 A;  4EZS A;  2C08 A;  3B53 X;  1JQK A;  3CZN A;  1QX1 A;  3DPP A;  3CV5 A;  3HAH A;  2Q13 A;  2YI8 A;  2OZN B;  4AZC B;  2OO2 A;  3SBT B;  3ER9 B;  1Q5L A;  4JWE A;  4EZP A;  4EZT A;  1R5E A;  4AZ6 A;  2Q12 A;  1W9M A;  3DX0 A;  4IM3 A;  2X5C A;  3D4Y A;  1GN9 A;  4AZI A;  2QXL A;  2RAI A;  3C7N A;  3B52 X;  4AZG A;  2OW6 A;  4EZQ A;  3D51 A;  4EZN A;  1OA0 A;  3D2E A;  3CVR A;  4WV7 A;  3QNJ A;  1X03 A;  3O3M B;  2YKT A;  3I04 A;  1U00 A;  5C5B B;  2X3V A;  3VEA A;  2F1B A;  2ND1 A;  7HSC A;  4H6I A;  3EJP A;  1R33 A;  3A98 A;  2LXY A;  2WYH A;  5E84 A;  2F7P A;  3L3O M;  3KAW A;  4F01 A;  3LMF A;  3DPQ A;  1I4D A;  3LLL A;  2EFK A;  3ER8 C;  4IM0 A;  3GI7 A;  2D1L A;  1I4T A;  3QA8 A;  3DYT A;  1TQV A;  5KBP A;  3CZS A;  3CAZ A;  3D4Z A;  2GAF D;  3BUI A;  4IWO A;  5TKY A;  4FZS A;  1PS3 A;  4I1Q A;  4AKV A;  1E9V A;  2ND0 A;  3KDR A;  1WDZ A;  2YL8 A;  1MJG A;  4F00 A;  2N3K A;  4EZR A;  2PY6 A;  1HWW A;  4EZZ A;  3DOB A;  2F7Q A;  3UIT A;  4E3C A;  3HAJ A;  1QWU A;  3DPO A;  2RAJ A;  4NQI A;  3EJQ A;  3RV1 A;  3O3O B;  2Z0O A;  4H6H A;  4PO2 A;  3LVT A;  2WIN M;  1SUF A;  3I2W A;  3SYV A;  4JL9 A;  2LM0 A;  1DKY A;  3FD9 A;  4EZU A;  4ILI A;  2YL9 A;  2ZXQ A;  4EZO A;  4E81 A;  3QE6 A;  3OHX M;  3BLB A;  1YUW A;  2V0O A;  4JWC A;  4FL9 A;  2FIC A;  3BUP A;  2V7Y A;  3T48 A;  4HR1 B;  2EX3 B;  4FZP A;  1GNL A;  3BVX A;  1OAO A;  1E2U A;  3BUQ A;  3EJU A;  3Q0K A;  4KIK B;  1HXK A;  3PLT A;  4I43 A;  3D2F A;  2EWF A;  1E1D A;  4WV5 A;  3DQG A;  4EZV A;  3DDG A;  3L3P A;  4EZX A;  2YL6 A;  4D8J A;  3T47 A;  2JNS A;  4JWD A;  1I4L A;  3BUD A;  3EJT A;  4AZC A;  4NPH A;  4R5L A;  1O7D C;  2O0I 1;  2YLA A;  5FIG A;  4NSW A;  3M3W A;  1TQT A;  3ERC C;  3BVT A;  4ATM A;  2GA9 D;  4UDX X;  3D52 A;  2ELB A;  1TQS A;  3QNI A;  3N8E A;  1BPR A;  3RV0 A;  4KIK A;  1Y2O A;  1GNT A;  4JWI A;  3ZEF A;  4IW0 A;  4EZW A;  4UDY X;  1SU7 A;  3BVW A;  5C5B A;  1DKZ A;  3Q84 A;  1SU6 A;  4ILG A;  1ZYL A;  1URU A;  2YIV X;  4DYL A;  2NCZ A;  4B9Q A;  3C7N B;  3F7W A;  2KHO A;  1TQU A;  4ILH B;  3QWE A;  3H0X A;  4FM3 A;  1DG4 A;  2YIA A;  2RT6 A;  3ABH A;  3D50 A;  1OA1 A;  2Z0N A;  4MQD A;  3DX1 A;  4HY9 A;  4JNE A;  2F18 A;  2X3W A;  4FZO A;  4R5J A;  4HYB A;  1LQ7 A;  2F1A A;  4BNE A;  3EJS A;  1I49 A;  2Z0V A;  2FYV A;  1YWM A;  2D4C A;  2QFF A;  3DX4 A;  5FLE X;  4AVM A;  2YL5 A;  3ZED A;  3I39 X;  4IWP A;  3HAI A;  3OK8 A;  2RAK A;  1ZWW A;  2YIB A;  2OBL A;  3O3N B;  4R5I A;  2QKW A;  3KAV A;  4IWQ A;  2F7O A;  3DX3 A;  2Z8Y A;  1UPX A;  1HTY A;  4AZ5 A;  2MI7 A;  4WPC A;  4EZY A;  1CKR A;  1R34 A;  3VKH A;  3CKD A;  4AZH A;  2OW7 A;  2GF4 A; 
#chains in the Genus database with same CATH homology
 2LM0 A;  4R5K A;  4R5G A;  1DKZ A;  1DKY A;  4M0M A;  3C7N A;  3B52 X;  3B51 X;  3FD9 A;  4EZU A;  4ILI A;  4EZQ A;  1SU6 A;  4EZN A;  4HR1 A;  1OA0 A;  1ZYL A;  3D2E A;  4ILG A;  4WV7 A;  4EZO A;  4E81 A;  3QNJ A;  3O3M B;  2YIV X;  2OBM A;  3I04 A;  3OHX M;  2OP6 A;  1YUW A;  4JWC A;  1U00 A;  4G6Q A;  2NCZ A;  4FL9 A;  4B9Q A;  2V7Y A;  3VEA A;  3C7N B;  3SBS A;  3F7W A;  2KHO A;  4JN4 A;  3T48 A;  3T49 A;  2ND1 A;  7HSC A;  1DKX A;  4H6I A;  4ILH B;  4JLC A;  4HR1 B;  3A98 A;  2EX3 B;  1GNL A;  3VEB A;  3H0X A;  4FM3 A;  1DG4 A;  2YIA A;  5E84 A;  2RT6 A;  3L3O M;  3KAW A;  4F01 A;  3LMF A;  3DPQ A;  1OAO A;  1E2U A;  4KIK B;  1OA1 A;  3ER8 C;  3T4A G;  4MQD A;  4IM0 A;  4JNF A;  4HY9 A;  4I43 A;  3D2F A;  4JNE A;  1SU8 A;  3T46 A;  3GI7 A;  2EWF A;  3I01 A;  1E1D A;  4R5J A;  3QA8 A;  4HYB A;  2YI9 A;  4WV5 A;  3DQG A;  4EZV A;  2BPR A;  4EZX A;  2GAF D;  4D8J A;  3OWG A;  3T47 A;  4IWO A;  5TKY A;  2JNS A;  4JWD A;  4IM2 A;  4EZS A;  1E9V A;  4NPH A;  4R5L A;  3B53 X;  1JQK A;  2ND0 A;  2QFF A;  5FIG A;  5FLE X;  3KDR A;  1MJG A;  4F00 A;  3DPP A;  3ZED A;  2N3K A;  3I39 X;  4IWP A;  4EZR A;  2PY6 A;  2YIB A;  2OBL A;  2YI8 A;  3O3N B;  4EZZ A;  3ERC C;  4R5I A;  3DOB A;  3KAV A;  3SBT B;  3UIT A;  4E3C A;  3ER9 B;  1Q5L A;  2GA9 D;  4IWQ A;  4JWE A;  3DPO A;  4UDX X;  4EZT A;  4EZP A;  2Z8Y A;  1W9M A;  3N8E A;  1UPX A;  1BPR A;  3RV1 A;  4IM3 A;  3O3O B;  4H6H A;  3RV0 A;  4PO2 A;  2X5C A;  4KIK A;  1GNT A;  4EZY A;  1GN9 A;  1CKR A;  4JWI A;  2WIN M;  1SUF A;  3ZEF A;  4IW0 A;  4EZW A;  3VKH A;  4UDY X;  4JL9 A;  2QXL A;  1SU7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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