4F00A

Crystal structure of the substrate binding domain of e.coli dnak in complex with an apidaecin fragment from the bumblebee (residues 3 to 11)
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
219
structure length
219
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
molecule keywords Chaperone protein DnaK
source organism Escherichia coli
molecule tags Chaperone/immune system
total genus 66
structure length 219
sequence length 219
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4f00A02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4f00A01
2QXLA 1DKXA 4R5JA 4R5LA 4EZOA 1Q5LA 2BPRA 4HYBA 7HSCA 3L3OM 4FL9A 4EZSA 4WV7A 3T49A 4EZRA 4H6IA 4JWEA 1DG4A 4JNFA 4JWDA 4EZWA 3N8EA 1DKZA 1CKRA 4EZPA 3QNJA 4WV5A 4EZYA 4PO2A 2V7YA 4R5IA 4EZXA 4EZQA 3H0XA 4JWIA 4EZZA 1U00A 5E84A 4F01A 3T46A 3C7NB 3DPPA 3T48A 4EZUA 3DQGA 4JN4A 3T4AG 2OP6A 2KHOA 2WINM 3DPQA 3C7NA 1DKYA 2QFFA 3OHXM 3D2FA 4R5KA 4R5GA 4B9QA 3D2EA 4JWCA 4HY9A 5TKYA 1BPRA 4EZNA 3T47A 1YUWA 4H6HA 3DPOA 4F00A 3DOBA 4JNEA 4EZVA 4EZTA 4E81A
chains in the Genus database with same CATH superfamily
1Q5LA 2ND1A 3A98A 1E1DA 3BVUA 2Z0NA 3GI7A 2EFKA 1E9VA 4R5IA 4DCNC 4MQDA 5E84A 5C5BA 3BUPA 2YL8A 4JN4A 4EZPA 4B9QA 1R33A 4ILHB 3BVVA 4IM0A 4F00A 1QX1A 3OK8A 2YI8A 4IW0A 3B51X 3ER9B 2YIBA 3BUQA 3BVTA 2RT6A 2ND0A 2OZNB 2RAKA 3C7NB 1WDZA 2GA9D 3EJRA 1URUA 2BPRA 3ER8C 3HAJA 4AZCA 4JWDA 1CKRA 4F01A 3DX2A 2Q12A 4R5KA 4JWCA 1ZYLA 2X3XA 1LQ7A 3QA8A 4WPCA 2F7QA 3LLLA 3QNIA 1SU8A 3RV1A 3Q84A 2Z0VA 3I2WA 3KAVA 5TKYA 3DDGA 4AZ7A 2WYIA 2EFLA 3VEAA 3DOBA 2GF4A 2FYVA 2C08A 5KBPA 2ALWA 4WV7A 3KAWA 4ILIA 2YI9A 4IWQA 1TQTA 2OW6A 3EJUA 3H0XA 1QWNA 3DPPA 2X3VA 3B53X 1I49A 4KIKA 1I4DA 3D2FA 2F1AA 2RAIA 3DDFA 4AZ6A 3CV5A 2LXYA 4ILGA 1SU6A 2D4CA 3ACOA 3N8EA 2EWFA 1DKZA 2OW7A 2YKTA 1JQKA 4EZUA 1E2UA 2KHOA 1DKYA 2QFFA 3D2EA 1X03A 2JNKA 1GN9A 2D1LA 4NPHA 3I01A 4AZ5A 2X3WA 4R5LA 4BNEA 3DX0A 3L3PA 2OBMA 2X5CA 4AKVA 1OA1A 4UDYX 2V0OA 4DYLA 4EZXA 1W9MA 3CZSA 2F1BA 3C7NA 3D51A 1YUWA 4H6HA 4JNEA 3DX4A 4AZHA 4AZBA 4HR1B 2ZXQA 3L3OM 2YL9A 1TQVA 3BVXA 3HAHA 3SYVA 4AZIA 4JWEA 1DG4A 2LM0A 3D52A 3D4YA 2WINM 3QE6A 4EZNA 4E3CA 4IWOA 2OBLA 3M3WA 2ELBA 4HYBA 4IWPA 4FZPA 3SOGA 3PLTA 3O3NB 3BVWA 1U00A 3EJSA 4NQIA 7HSCA 3SBTB 4UDXX 3DPOA 5FLEX 3VKHA 4AZGA 1OA0A 3ABHA 1MJGA 4JLCA 4H6IA 4EZWA 1UPXA 3ZEDA 4WV5A 2V7YA 4H8SA 4M0MA 3O3OB 3T46A 2JNSA 3T4AG 2YL6A 4R5GA 1R34A 1BPRA 3ERCC 3T47A 1SU7A 2F18A 3KDRA 3LVTA 3I39X 3D4ZA 3BUDA 3CZNA 4NSWA 2YLAA 4EZRA 1HXKA 2MI7A 3G9GA 1PS3A 1SUFA 1GNLA 3DX1A 4EZQA 1OAOA 3BUIA 4IM3A 3OHXM 3CVRA 2Z0OA 4EZTA 1TQUA 2YLLA 4EZSA 3BUBA 3ZEFA 2GAFD 2N3KA 2RAJA 5FIGA 2F7RA 5C5BB 4EZZA 3OWGA 3T48A 3UITA 2OP6A 2NCZA 3LMFA 1I4LA 4FM3A 3DYTA 3Q0KA 1Y2OA 4FL9A 4HR1A 1YWMA 2F7PA 4JNFA 3CAZA 4EZYA 2YIAA 2EX3B 3EJTA 1HWWA 4G6QA 4I1QA 3VEBA 4JL9A 1O7DB 3BLBA 4WPEA 4EZVA 2QXLA 3O3MB 3RPMA 4AZCB 4I43A 2YL5A 2Z8YA 1O7DC 1QWUA 3SBSA 3QNJA 4PO2A 1R5EA 3DQGA 3HAIA 4AVMA 4HY9A 4FZOA 3F7WA 1I4TA 1TQWA 4EZOA 1DKXA 2QKWA 1ZWWA 3D50A 3EJPA 3B52X 3DPQA 4FZSA 4IM2A 3DX3A 4E81A 3RV0A 4R5JA 2PY6A 2F7OA 3QWEA 1X04A 2YIVX 3T49A 3CKDA 4D8JA 2O0I1 2PMRA 3I04A 4KIKB 4JWIA 3EJQA 1HTYA 1TQSA 2FICA 2OO2A 2Q13A 1GNTA 2WYHA 4ATMA 3FD9A
chains in the Genus database with same CATH topology
1Q5LA 2ND1A 4HYBA 4IWPA 3A98A 1E1DA 4FL9A 4HR1A 3KAWA 4WV7A 4ILIA 4JNFA 3O3NB 2YI9A 4IWQA 3GI7A 4EZYA 2YIAA 1E9VA 2EX3B 4R5IA 3H0XA 1U00A 5E84A 4MQDA 3DPPA 4G6QA 4JN4A 3B53X 7HSCA 4EZPA 3VEBA 4KIKA 3SBTB 4B9QA 3D2FA 4ILHB 4IM0A 4UDXX 4JL9A 3DPOA 4F00A 5FLEX 4EZVA 3VKHA 2QXLA 3O3MB 4ILGA 2YI8A 1OA0A 3B51X 4IW0A 3ER9B 4I43A 2YIBA 1MJGA 1SU6A 4JLCA 2Z8YA 4H6IA 4EZWA 2EWFA 3N8EA 1DKZA 1UPXA 3SBSA 2RT6A 3QNJA 3ZEDA 4WV5A 2ND0A 4PO2A 2V7YA 4M0MA 3C7NB 3O3OB 1JQKA 3DQGA 3T46A 2JNSA 4EZUA 3T4AG 1E2UA 2KHOA 1DKYA 2QFFA 4R5GA 2GA9D 3D2EA 4HY9A 1BPRA 3ERCC 3T47A 3F7WA 1SU7A 3KDRA 1GN9A 4NPHA 3I01A 3I39X 4R5LA 1DKXA 4EZOA 2BPRA 3ER8C 2OBMA 2X5CA 4EZRA 1OA1A 4UDYX 4JWDA 1CKRA 1SUFA 1GNLA 4EZXA 1W9MA 4EZQA 1OAOA 3B52X 4F01A 4IM3A 3OHXM 3DPQA 3C7NA 4R5KA 4JWCA 1YUWA 4IM2A 4H6HA 1ZYLA 4JNEA 4EZTA 4E81A 3RV0A 4HR1B 4R5JA 2PY6A 3L3OM 2YIVX 4EZSA 3QA8A 3T49A 4D8JA 4JWEA 3ZEFA 1DG4A 2GAFD 2N3KA 2LM0A 5FIGA 1SU8A 3I04A 4KIKB 4JWIA 3OWGA 4EZZA 3RV1A 3T48A 3UITA 2OP6A 2WINM 4EZNA 4E3CA 3KAVA 5TKYA 2NCZA 3LMFA 4IWOA 1GNTA 2OBLA 4FM3A 3VEAA 3FD9A 3DOBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QXL A;  1DKX A;  4R5J A;  4R5L A;  4EZO A;  1Q5L A;  2BPR A;  4HYB A;  7HSC A;  3L3O M;  4FL9 A;  4EZS A;  4WV7 A;  3T49 A;  4EZR A;  4H6I A;  4JWE A;  1DG4 A;  4JNF A;  4JWD A;  4EZW A;  3N8E A;  1DKZ A;  1CKR A;  4EZP A;  3QNJ A;  4WV5 A;  4EZY A;  4PO2 A;  2V7Y A;  4R5I A;  4EZX A;  4EZQ A;  3H0X A;  4JWI A;  4EZZ A;  1U00 A;  5E84 A;  4F01 A;  3T46 A;  3C7N B;  3DPP A;  3T48 A;  4EZU A;  3DQG A;  4JN4 A;  3T4A G;  2OP6 A;  2KHO A;  2WIN M;  3DPQ A;  3C7N A;  1DKY A;  2QFF A;  3OHX M;  3D2F A;  4R5K A;  4R5G A;  4B9Q A;  3D2E A;  4JWC A;  4HY9 A;  5TKY A;  1BPR A;  4EZN A;  3T47 A;  1YUW A;  4H6H A;  3DPO A;  4F00 A;  3DOB A;  4JNE A;  4EZV A;  4EZT A;  4E81 A; 
#chains in the Genus database with same CATH topology
 1Q5L A;  2ND1 A;  3A98 A;  1E1D A;  3BVU A;  2Z0N A;  3GI7 A;  2EFK A;  1E9V A;  4R5I A;  4DCN C;  4MQD A;  5E84 A;  5C5B A;  3BUP A;  2YL8 A;  4JN4 A;  4EZP A;  4B9Q A;  1R33 A;  4ILH B;  3BVV A;  4IM0 A;  4F00 A;  1QX1 A;  3OK8 A;  2YI8 A;  4IW0 A;  3B51 X;  3ER9 B;  2YIB A;  3BUQ A;  3BVT A;  2RT6 A;  2ND0 A;  2OZN B;  2RAK A;  3C7N B;  1WDZ A;  2GA9 D;  3EJR A;  1URU A;  2BPR A;  3ER8 C;  3HAJ A;  4AZC A;  4JWD A;  1CKR A;  4F01 A;  3DX2 A;  2Q12 A;  4R5K A;  4JWC A;  1ZYL A;  2X3X A;  1LQ7 A;  3QA8 A;  4WPC A;  2F7Q A;  3LLL A;  3QNI A;  1SU8 A;  3RV1 A;  3Q84 A;  2Z0V A;  3I2W A;  3KAV A;  5TKY A;  3DDG A;  4AZ7 A;  2WYI A;  2EFL A;  3VEA A;  3DOB A;  2GF4 A;  2FYV A;  2C08 A;  5KBP A;  2ALW A;  4WV7 A;  3KAW A;  4ILI A;  2YI9 A;  4IWQ A;  1TQT A;  2OW6 A;  3EJU A;  3H0X A;  1QWN A;  3DPP A;  2X3V A;  3B53 X;  1I49 A;  4KIK A;  1I4D A;  3D2F A;  2F1A A;  2RAI A;  3DDF A;  4AZ6 A;  3CV5 A;  2LXY A;  4ILG A;  1SU6 A;  2D4C A;  3ACO A;  3N8E A;  2EWF A;  1DKZ A;  2OW7 A;  2YKT A;  1JQK A;  4EZU A;  1E2U A;  2KHO A;  1DKY A;  2QFF A;  3D2E A;  1X03 A;  2JNK A;  1GN9 A;  2D1L A;  4NPH A;  3I01 A;  4AZ5 A;  2X3W A;  4R5L A;  4BNE A;  3DX0 A;  3L3P A;  2OBM A;  2X5C A;  4AKV A;  1OA1 A;  4UDY X;  2V0O A;  4DYL A;  4EZX A;  1W9M A;  3CZS A;  2F1B A;  3C7N A;  3D51 A;  1YUW A;  4H6H A;  4JNE A;  3DX4 A;  4AZH A;  4AZB A;  4HR1 B;  2ZXQ A;  3L3O M;  2YL9 A;  1TQV A;  3BVX A;  3HAH A;  3SYV A;  4AZI A;  4JWE A;  1DG4 A;  2LM0 A;  3D52 A;  3D4Y A;  2WIN M;  3QE6 A;  4EZN A;  4E3C A;  4IWO A;  2OBL A;  3M3W A;  2ELB A;  4HYB A;  4IWP A;  4FZP A;  3SOG A;  3PLT A;  3O3N B;  3BVW A;  1U00 A;  3EJS A;  4NQI A;  7HSC A;  3SBT B;  4UDX X;  3DPO A;  5FLE X;  3VKH A;  4AZG A;  1OA0 A;  3ABH A;  1MJG A;  4JLC A;  4H6I A;  4EZW A;  1UPX A;  3ZED A;  4WV5 A;  2V7Y A;  4H8S A;  4M0M A;  3O3O B;  3T46 A;  2JNS A;  3T4A G;  2YL6 A;  4R5G A;  1R34 A;  1BPR A;  3ERC C;  3T47 A;  1SU7 A;  2F18 A;  3KDR A;  3LVT A;  3I39 X;  3D4Z A;  3BUD A;  3CZN A;  4NSW A;  2YLA A;  4EZR A;  1HXK A;  2MI7 A;  3G9G A;  1PS3 A;  1SUF A;  1GNL A;  3DX1 A;  4EZQ A;  1OAO A;  3BUI A;  4IM3 A;  3OHX M;  3CVR A;  2Z0O A;  4EZT A;  1TQU A;  2YLL A;  4EZS A;  3BUB A;  3ZEF A;  2GAF D;  2N3K A;  2RAJ A;  5FIG A;  2F7R A;  5C5B B;  4EZZ A;  3OWG A;  3T48 A;  3UIT A;  2OP6 A;  2NCZ A;  3LMF A;  1I4L A;  4FM3 A;  3DYT A;  3Q0K A;  1Y2O A;  4FL9 A;  4HR1 A;  1YWM A;  2F7P A;  4JNF A;  3CAZ A;  4EZY A;  2YIA A;  2EX3 B;  3EJT A;  1HWW A;  4G6Q A;  4I1Q A;  3VEB A;  4JL9 A;  1O7D B;  3BLB A;  4WPE A;  4EZV A;  2QXL A;  3O3M B;  3RPM A;  4AZC B;  4I43 A;  2YL5 A;  2Z8Y A;  1O7D C;  1QWU A;  3SBS A;  3QNJ A;  4PO2 A;  1R5E A;  3DQG A;  3HAI A;  4AVM A;  4HY9 A;  4FZO A;  3F7W A;  1I4T A;  1TQW A;  4EZO A;  1DKX A;  2QKW A;  1ZWW A;  3D50 A;  3EJP A;  3B52 X;  3DPQ A;  4FZS A;  4IM2 A;  3DX3 A;  4E81 A;  3RV0 A;  4R5J A;  2PY6 A;  2F7O A;  3QWE A;  1X04 A;  2YIV X;  3T49 A;  3CKD A;  4D8J A;  2O0I 1;  2PMR A;  3I04 A;  4KIK B;  4JWI A;  3EJQ A;  1HTY A;  1TQS A;  2FIC A;  2OO2 A;  2Q13 A;  1GNT A;  2WYH A;  4ATM A;  3FD9 A; 
#chains in the Genus database with same CATH homology
 1Q5L A;  2ND1 A;  4HYB A;  4IWP A;  3A98 A;  1E1D A;  4FL9 A;  4HR1 A;  3KAW A;  4WV7 A;  4ILI A;  4JNF A;  3O3N B;  2YI9 A;  4IWQ A;  3GI7 A;  4EZY A;  2YIA A;  1E9V A;  2EX3 B;  4R5I A;  3H0X A;  1U00 A;  5E84 A;  4MQD A;  3DPP A;  4G6Q A;  4JN4 A;  3B53 X;  7HSC A;  4EZP A;  3VEB A;  4KIK A;  3SBT B;  4B9Q A;  3D2F A;  4ILH B;  4IM0 A;  4UDX X;  4JL9 A;  3DPO A;  4F00 A;  5FLE X;  4EZV A;  3VKH A;  2QXL A;  3O3M B;  4ILG A;  2YI8 A;  1OA0 A;  3B51 X;  4IW0 A;  3ER9 B;  4I43 A;  2YIB A;  1MJG A;  1SU6 A;  4JLC A;  2Z8Y A;  4H6I A;  4EZW A;  2EWF A;  3N8E A;  1DKZ A;  1UPX A;  3SBS A;  2RT6 A;  3QNJ A;  3ZED A;  4WV5 A;  2ND0 A;  4PO2 A;  2V7Y A;  4M0M A;  3C7N B;  3O3O B;  1JQK A;  3DQG A;  3T46 A;  2JNS A;  4EZU A;  3T4A G;  1E2U A;  2KHO A;  1DKY A;  2QFF A;  4R5G A;  2GA9 D;  3D2E A;  4HY9 A;  1BPR A;  3ERC C;  3T47 A;  3F7W A;  1SU7 A;  3KDR A;  1GN9 A;  4NPH A;  3I01 A;  3I39 X;  4R5L A;  1DKX A;  4EZO A;  2BPR A;  3ER8 C;  2OBM A;  2X5C A;  4EZR A;  1OA1 A;  4UDY X;  4JWD A;  1CKR A;  1SUF A;  1GNL A;  4EZX A;  1W9M A;  4EZQ A;  1OAO A;  3B52 X;  4F01 A;  4IM3 A;  3OHX M;  3DPQ A;  3C7N A;  4R5K A;  4JWC A;  1YUW A;  4IM2 A;  4H6H A;  1ZYL A;  4JNE A;  4EZT A;  4E81 A;  3RV0 A;  4HR1 B;  4R5J A;  2PY6 A;  3L3O M;  2YIV X;  4EZS A;  3QA8 A;  3T49 A;  4D8J A;  4JWE A;  3ZEF A;  1DG4 A;  2GAF D;  2N3K A;  2LM0 A;  5FIG A;  1SU8 A;  3I04 A;  4KIK B;  4JWI A;  3OWG A;  4EZZ A;  3RV1 A;  3T48 A;  3UIT A;  2OP6 A;  2WIN M;  4EZN A;  4E3C A;  3KAV A;  5TKY A;  2NCZ A;  3LMF A;  4IWO A;  1GNT A;  2OBL A;  4FM3 A;  3VEA A;  3FD9 A;  3DOB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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