4F0HB

Unactivated rubisco with oxygen bound
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
138
structure length
138
Chain Sequence
MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRPKHEPGFNLIRQEDKSRSIKYSIQAYETYKPEDQRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Ribulose bisphosphate carboxylase large chain
publication title Structural mechanism of RuBisCO activation by carbamylation of the active site lysine.
pubmed doi rcsb
total genus 33
structure length 138
sequence length 138
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2012-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 4f0hB00
3RUBS 1BWVS 2V68I 1RSCI 2V69I 2YBVB 4F0MB 4RUBS 1SVDM 4HHHS 1IR21 3ZXWB 1RXOC 8RUCI 1GK8I 1RLCS 1RLDS 1UWAC 1UZDC 1RBLI 2V63I 1IWAB 1UW9C 1EJ7S 1UPPI 1RCOC 1UZHC 2VDHI 1AA1C 2V67I 4F0KB 1UPMC 1WDDS 4F0HB 1IR1S 1BXNI 1AUSS 2VDII 2V6AI 1RBOC 1RCXC 3AXMS 4MKVS 3AXKS
chains in the Genus database with same CATH superfamily
3RUBS 3UMYA 1BWVS 2V68I 1RSCI 2V69I 2YBVB 4F0MB 1I2AA 4F9TA 4RUBS 1SVDM 4HHHS 1IR21 3ZXWB 4LQ4A 5DM60 3TG8A 1RXOC 8RUCI 1MZPA 1U63A 1GK8I 4QGBA 4REOA 1DWUA 1RLCS 1RLDS 3QOYA 1UWAC 1UZDC 1RBLI 2V63I 1IWAB 4QG3A 2DFXI 1UW9C 4QVIA 1CJSA 1EJ7S 1UPPI 3ZQJA 1RCOC 1UZHC 2VDHI 1AA1C 4MKVS 2V67I 4F0KB 1UPMC 1WDDS 1AD2A 4F0HB 1IR1S 1ZHOA 1BXNI 3U4MA 1AUSS 2VDII 2V6AI 4DFCB 1RBOC 2HW8A 5DM70 1RCXC 2FHZA 3AXMS 3FPNA 3AXKS 3U56A
chains in the Genus database with same CATH topology
3RUBS 1BWVS 2V68I 1RSCI 2V69I 2YBVB 4F0MB 4RUBS 1SVDM 4HHHS 1IR21 3ZXWB 1RXOC 8RUCI 1GK8I 1RLCS 1RLDS 1UWAC 1UZDC 1RBLI 2V63I 1IWAB 1UW9C 1EJ7S 1UPPI 1RCOC 1UZHC 2VDHI 1AA1C 2V67I 4F0KB 1UPMC 1WDDS 4F0HB 1IR1S 1BXNI 1AUSS 2VDII 2V6AI 1RBOC 1RCXC 3AXMS 4MKVS 3AXKS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RUB S;  1BWV S;  2V68 I;  1RSC I;  2V69 I;  2YBV B;  4F0M B;  4RUB S;  1SVD M;  4HHH S;  1IR2 1;  3ZXW B;  1RXO C;  8RUC I;  1GK8 I;  1RLC S;  1RLD S;  1UWA C;  1UZD C;  1RBL I;  2V63 I;  1IWA B;  1UW9 C;  1EJ7 S;  1UPP I;  1RCO C;  1UZH C;  2VDH I;  1AA1 C;  2V67 I;  4F0K B;  1UPM C;  1WDD S;  4F0H B;  1IR1 S;  1BXN I;  1AUS S;  2VDI I;  2V6A I;  1RBO C;  1RCX C;  3AXM S;  4MKV S;  3AXK S; 
#chains in the Genus database with same CATH topology
 3RUB S;  3UMY A;  1BWV S;  2V68 I;  1RSC I;  2V69 I;  2YBV B;  4F0M B;  1I2A A;  4F9T A;  4RUB S;  1SVD M;  4HHH S;  1IR2 1;  3ZXW B;  4LQ4 A;  5DM6 0;  3TG8 A;  1RXO C;  8RUC I;  1MZP A;  1U63 A;  1GK8 I;  4QGB A;  4REO A;  1DWU A;  1RLC S;  1RLD S;  3QOY A;  1UWA C;  1UZD C;  1RBL I;  2V63 I;  1IWA B;  4QG3 A;  2DFX I;  1UW9 C;  4QVI A;  1CJS A;  1EJ7 S;  1UPP I;  3ZQJ A;  1RCO C;  1UZH C;  2VDH I;  1AA1 C;  4MKV S;  2V67 I;  4F0K B;  1UPM C;  1WDD S;  1AD2 A;  4F0H B;  1IR1 S;  1ZHO A;  1BXN I;  3U4M A;  1AUS S;  2VDI I;  2V6A I;  4DFC B;  1RBO C;  2HW8 A;  5DM7 0;  1RCX C;  2FHZ A;  3AXM S;  3FPN A;  3AXK S;  3U56 A; 
#chains in the Genus database with same CATH homology
 3RUB S;  1BWV S;  2V68 I;  1RSC I;  2V69 I;  2YBV B;  4F0M B;  4RUB S;  1SVD M;  4HHH S;  1IR2 1;  3ZXW B;  1RXO C;  8RUC I;  1GK8 I;  1RLC S;  1RLD S;  1UWA C;  1UZD C;  1RBL I;  2V63 I;  1IWA B;  1UW9 C;  1EJ7 S;  1UPP I;  1RCO C;  1UZH C;  2VDH I;  1AA1 C;  2V67 I;  4F0K B;  1UPM C;  1WDD S;  4F0H B;  1IR1 S;  1BXN I;  1AUS S;  2VDI I;  2V6A I;  1RBO C;  1RCX C;  3AXM S;  4MKV S;  3AXK S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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