4F0MB

Unactivated rubisco with magnesium and a water molecule bound
Total Genus 33
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
138
structure length
138
Chain Sequence
MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRPKHEPGFNLIRQEDKSRSIKYSIQAYETYKPEDQRY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Ribulose bisphosphate carboxylase large chain
publication title Structural mechanism of RuBisCO activation by carbamylation of the active site lysine.
pubmed doi rcsb
total genus 33
structure length 138
sequence length 138
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2012-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 4f0mB00
4MKVS 3ZXWB 1RXOC 1UPPI 1WDDS 1BXNI 1BWVS 1GK8I 3RUBS 2VDII 1RCXC 1RBLI 1RLDS 3AXKS 1EJ7S 1RLCS 1AUSS 1UZHC 1SVDM 1UPMC 2V67I 3AXMS 2V68I 1RSCI 4HHHS 1RBOC 1UWAC 2VDHI 4F0KB 2V6AI 4F0HB 1UW9C 1RCOC 1IWAB 1IR21 4RUBS 1UZDC 2V69I 4F0MB 2V63I 8RUCI 2YBVB 1AA1C 1IR1S
chains in the Genus database with same CATH superfamily
4MKVS 3ZXWB 1RXOC 1UPPI 1WDDS 1BXNI 3QOYA 4QVIA 3U56A 1BWVS 1AD2A 1GK8I 2HW8A 3RUBS 1ZHOA 5DM70 4LQ4A 2VDII 1RCXC 1U63A 1RBLI 1RLDS 3AXKS 1DWUA 1EJ7S 1AUSS 1RLCS 1CJSA 1MZPA 1UZHC 2DFXI 1SVDM 1UPMC 4DFCB 2V67I 3AXMS 2V68I 1RSCI 4HHHS 3TG8A 1RBOC 1UWAC 2VDHI 4F0KB 2V6AI 4QGBA 4F0HB 4QG3A 3U4MA 1UW9C 3FPNA 1RCOC 1IWAB 1IR21 4RUBS 5DM60 1I2AA 4REOA 1UZDC 2FHZA 2V69I 4F0MB 4F9TA 2V63I 8RUCI 3ZQJA 2YBVB 3UMYA 1AA1C 1IR1S
chains in the Genus database with same CATH topology
4MKVS 3ZXWB 1RXOC 1UPPI 1WDDS 1BXNI 1BWVS 1GK8I 3RUBS 2VDII 1RCXC 1RBLI 1RLDS 3AXKS 1EJ7S 1RLCS 1AUSS 1UZHC 1SVDM 1UPMC 2V67I 3AXMS 2V68I 1RSCI 4HHHS 1RBOC 1UWAC 2VDHI 4F0KB 2V6AI 4F0HB 1UW9C 1RCOC 1IWAB 1IR21 4RUBS 1UZDC 2V69I 4F0MB 2V63I 8RUCI 2YBVB 1AA1C 1IR1S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MKV S;  3ZXW B;  1RXO C;  1UPP I;  1WDD S;  1BXN I;  1BWV S;  1GK8 I;  3RUB S;  2VDI I;  1RCX C;  1RBL I;  1RLD S;  3AXK S;  1EJ7 S;  1RLC S;  1AUS S;  1UZH C;  1SVD M;  1UPM C;  2V67 I;  3AXM S;  2V68 I;  1RSC I;  4HHH S;  1RBO C;  1UWA C;  2VDH I;  4F0K B;  2V6A I;  4F0H B;  1UW9 C;  1RCO C;  1IWA B;  1IR2 1;  4RUB S;  1UZD C;  2V69 I;  4F0M B;  2V63 I;  8RUC I;  2YBV B;  1AA1 C;  1IR1 S; 
#chains in the Genus database with same CATH topology
 4MKV S;  3ZXW B;  1RXO C;  1UPP I;  1WDD S;  1BXN I;  3QOY A;  4QVI A;  3U56 A;  1BWV S;  1AD2 A;  1GK8 I;  2HW8 A;  3RUB S;  1ZHO A;  5DM7 0;  4LQ4 A;  2VDI I;  1RCX C;  1U63 A;  1RBL I;  1RLD S;  3AXK S;  1DWU A;  1EJ7 S;  1AUS S;  1RLC S;  1CJS A;  1MZP A;  1UZH C;  2DFX I;  1SVD M;  1UPM C;  4DFC B;  2V67 I;  3AXM S;  2V68 I;  1RSC I;  4HHH S;  3TG8 A;  1RBO C;  1UWA C;  2VDH I;  4F0K B;  2V6A I;  4QGB A;  4F0H B;  4QG3 A;  3U4M A;  1UW9 C;  3FPN A;  1RCO C;  1IWA B;  1IR2 1;  4RUB S;  5DM6 0;  1I2A A;  4REO A;  1UZD C;  2FHZ A;  2V69 I;  4F0M B;  4F9T A;  2V63 I;  8RUC I;  3ZQJ A;  2YBV B;  3UMY A;  1AA1 C;  1IR1 S; 
#chains in the Genus database with same CATH homology
 4MKV S;  3ZXW B;  1RXO C;  1UPP I;  1WDD S;  1BXN I;  1BWV S;  1GK8 I;  3RUB S;  2VDI I;  1RCX C;  1RBL I;  1RLD S;  3AXK S;  1EJ7 S;  1RLC S;  1AUS S;  1UZH C;  1SVD M;  1UPM C;  2V67 I;  3AXM S;  2V68 I;  1RSC I;  4HHH S;  1RBO C;  1UWA C;  2VDH I;  4F0K B;  2V6A I;  4F0H B;  1UW9 C;  1RCO C;  1IWA B;  1IR2 1;  4RUB S;  1UZD C;  2V69 I;  4F0M B;  2V63 I;  8RUC I;  2YBV B;  1AA1 C;  1IR1 S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...