4F1RA

Structure analysis of the global metabolic regulator crc from pseudomonas aeruginos
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
259
structure length
259
Chain Sequence
MRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPSFQLDGYFLYACDAELPEQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYIYCGSLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSREGDQFSWWPDSEQAEMLNLGWRFDYQVLTPGLRRFVRNAKLPRQPRFSQHAPLIVDYDWQLSI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure analysis of the global metabolic regulator Crc from Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Transcription regulator
source organism Pseudomonas aeruginosa
molecule keywords Catabolite repression control protein
total genus 81
structure length 259
sequence length 259
ec nomenclature
pdb deposition date 2012-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 4f1rA00
2V0RA 1AKOA 5INQA 1DE9A 2XSWA 3G8VA 3W2YA 5CFGA 5INKA 3G3YA 4GZ2A 1SR4B 1SI6X 5DFIA 2O3HA 3MTCA 1DNKA 1E9NA 4B5MA 5A7IA 3NGQA 4B5HA 4L20A 4K6LF 4GYZA 2O3CA 4QHEA 3G4TA 4F1HA 4F1IA 3I48A 3G2CA 3FZIA 2JC5A 3I41A 4RUWA 5J8NA 2DNJA 1HD7A 4GEWA 2A3ZB 5DFHA 3N9VA 3G6SA 3G1KA 5A7JA 2DDTA 4F1RA 2VOAA 5INLA 4CMLA 3I46A 4L1YA 4FPVA 5J3ZA 4CMNA 4B5IA 5DFJA 4A9CA 5INOA 3W2XA 5DV4A 4GZ1A 3K55A 1ZWXA 4B5GA 1I9YA 4IEMA 3NGOA 1Y21A 2ISIA 3NGNA 4L21A 1YJHA 2UYRX 3U8UA 3L1WA 5DV2A 5CFEA 3GA6A 4GZ0A 4JG3A 2EI9A 4LNDA 5J42A 3MPRA 3G2DA 5DG0A 3WCXA 5INNA 2J63A 5INPA 2A42B 1VYBA 3G91A 3I5VA 5HT2A 3G38A 2D1KB 3W3DB 1BIXA 2F1NA 2DDRA 4L1ZA 2V0SA 4F1HB 5J3SA 4B5JA 1DE8A 2IMQX 5DFFA 1DEWA 2A41B 3DNIA 5INMA 4AWNA 1I9ZA 3G0AA 4PUQA 1WDUA 4QHDA 3NR8A 2JC4A 5J3PA 2A40B 4B5FA 4C1RA 2DDSA 3G00A 4QH9A 5EWTA 4FVAA 1ATND 2F2FB 3CJCD 3G3CA 1NTFA 3TEBA 3G0RA
chains in the Genus database with same CATH superfamily
2V0RA 1AKOA 5INQA 1DE9A 2XSWA 3G8VA 3W2YA 5CFGA 5INKA 3G3YA 4GZ2A 1SR4B 1SI6X 5DFIA 2O3HA 3MTCA 1DNKA 1E9NA 4B5MA 5A7IA 3NGQA 4B5HA 4L20A 4K6LF 4GYZA 2O3CA 4QHEA 3G4TA 4F1HA 4F1IA 3I48A 3G2CA 3FZIA 2JC5A 3I41A 4RUWA 5J8NA 2DNJA 1HD7A 4GEWA 2A3ZB 5DFHA 3N9VA 3G6SA 3G1KA 5A7JA 2DDTA 4F1RA 2VOAA 5INLA 4CMLA 3I46A 4L1YA 4FPVA 5J3ZA 4CMNA 4B5IA 5DFJA 4A9CA 5INOA 3W2XA 5DV4A 4GZ1A 3K55A 1ZWXA 4B5GA 1I9YA 4IEMA 3NGOA 1Y21A 2ISIA 3NGNA 4L21A 1YJHA 2UYRX 3U8UA 3L1WA 5DV2A 5CFEA 3GA6A 4GZ0A 4JG3A 2EI9A 4LNDA 5J42A 3MPRA 3G2DA 5DG0A 3WCXA 5INNA 2J63A 5INPA 2A42B 1VYBA 3G91A 3I5VA 5HT2A 3G38A 2D1KB 3W3DB 1BIXA 2F1NA 2DDRA 4L1ZA 2V0SA 4F1HB 5J3SA 4B5JA 1DE8A 2IMQX 5DFFA 1DEWA 2A41B 3DNIA 5INMA 4AWNA 1I9ZA 3G0AA 4PUQA 1WDUA 4QHDA 3NR8A 2JC4A 5J3PA 2A40B 4B5FA 4C1RA 2DDSA 3G00A 4QH9A 5EWTA 4FVAA 1ATND 2F2FB 3CJCD 3G3CA 1NTFA 3TEBA 3G0RA
chains in the Genus database with same CATH topology
2V0RA 1AKOA 5INQA 1DE9A 2XSWA 3G8VA 3W2YA 5CFGA 5INKA 3G3YA 4GZ2A 1SR4B 1SI6X 5DFIA 2O3HA 3MTCA 1DNKA 1E9NA 4B5MA 5A7IA 3NGQA 4B5HA 4L20A 4K6LF 4GYZA 2O3CA 4QHEA 3G4TA 4F1HA 4F1IA 3I48A 3G2CA 3FZIA 2JC5A 3I41A 4RUWA 5J8NA 2DNJA 1HD7A 4GEWA 2A3ZB 5DFHA 3N9VA 3G6SA 3G1KA 5A7JA 2DDTA 4F1RA 2VOAA 5INLA 4CMLA 3I46A 4L1YA 4FPVA 5J3ZA 4CMNA 4B5IA 5DFJA 4A9CA 5INOA 3W2XA 5DV4A 4GZ1A 3K55A 1ZWXA 4B5GA 1I9YA 4IEMA 3NGOA 1Y21A 2ISIA 3NGNA 4L21A 1YJHA 2UYRX 3U8UA 3L1WA 5DV2A 5CFEA 3GA6A 4GZ0A 4JG3A 2EI9A 4LNDA 5J42A 3MPRA 3G2DA 5DG0A 3WCXA 5INNA 2J63A 5INPA 2A42B 1VYBA 3G91A 3I5VA 5HT2A 3G38A 2D1KB 3W3DB 1BIXA 2F1NA 2DDRA 4L1ZA 2V0SA 4F1HB 5J3SA 4B5JA 1DE8A 2IMQX 5DFFA 1DEWA 2A41B 3DNIA 5INMA 4AWNA 1I9ZA 3G0AA 4PUQA 1WDUA 4QHDA 3NR8A 2JC4A 5J3PA 2A40B 4B5FA 4C1RA 2DDSA 3G00A 4QH9A 5EWTA 4FVAA 1ATND 2F2FB 3CJCD 3G3CA 1NTFA 3TEBA 3G0RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V0R A;  1AKO A;  5INQ A;  1DE9 A;  2XSW A;  3G8V A;  3W2Y A;  5CFG A;  5INK A;  3G3Y A;  4GZ2 A;  1SR4 B;  1SI6 X;  5DFI A;  2O3H A;  3MTC A;  1DNK A;  1E9N A;  4B5M A;  5A7I A;  3NGQ A;  4B5H A;  4L20 A;  4K6L F;  4GYZ A;  2O3C A;  4QHE A;  3G4T A;  4F1H A;  4F1I A;  3I48 A;  3G2C A;  3FZI A;  2JC5 A;  3I41 A;  4RUW A;  5J8N A;  2DNJ A;  1HD7 A;  4GEW A;  2A3Z B;  5DFH A;  3N9V A;  3G6S A;  3G1K A;  5A7J A;  2DDT A;  4F1R A;  2VOA A;  5INL A;  4CML A;  3I46 A;  4L1Y A;  4FPV A;  5J3Z A;  4CMN A;  4B5I A;  5DFJ A;  4A9C A;  5INO A;  3W2X A;  5DV4 A;  4GZ1 A;  3K55 A;  1ZWX A;  4B5G A;  1I9Y A;  4IEM A;  3NGO A;  1Y21 A;  2ISI A;  3NGN A;  4L21 A;  1YJH A;  2UYR X;  3U8U A;  3L1W A;  5DV2 A;  5CFE A;  3GA6 A;  4GZ0 A;  4JG3 A;  2EI9 A;  4LND A;  5J42 A;  3MPR A;  3G2D A;  5DG0 A;  3WCX A;  5INN A;  2J63 A;  5INP A;  2A42 B;  1VYB A;  3G91 A;  3I5V A;  5HT2 A;  3G38 A;  2D1K B;  3W3D B;  1BIX A;  2F1N A;  2DDR A;  4L1Z A;  2V0S A;  4F1H B;  5J3S A;  4B5J A;  1DE8 A;  2IMQ X;  5DFF A;  1DEW A;  2A41 B;  3DNI A;  5INM A;  4AWN A;  1I9Z A;  3G0A A;  4PUQ A;  1WDU A;  4QHD A;  3NR8 A;  2JC4 A;  5J3P A;  2A40 B;  4B5F A;  4C1R A;  2DDS A;  3G00 A;  4QH9 A;  5EWT A;  4FVA A;  1ATN D;  2F2F B;  3CJC D;  3G3C A;  1NTF A;  3TEB A;  3G0R A; 
#chains in the Genus database with same CATH topology
 2V0R A;  1AKO A;  5INQ A;  1DE9 A;  2XSW A;  3G8V A;  3W2Y A;  5CFG A;  5INK A;  3G3Y A;  4GZ2 A;  1SR4 B;  1SI6 X;  5DFI A;  2O3H A;  3MTC A;  1DNK A;  1E9N A;  4B5M A;  5A7I A;  3NGQ A;  4B5H A;  4L20 A;  4K6L F;  4GYZ A;  2O3C A;  4QHE A;  3G4T A;  4F1H A;  4F1I A;  3I48 A;  3G2C A;  3FZI A;  2JC5 A;  3I41 A;  4RUW A;  5J8N A;  2DNJ A;  1HD7 A;  4GEW A;  2A3Z B;  5DFH A;  3N9V A;  3G6S A;  3G1K A;  5A7J A;  2DDT A;  4F1R A;  2VOA A;  5INL A;  4CML A;  3I46 A;  4L1Y A;  4FPV A;  5J3Z A;  4CMN A;  4B5I A;  5DFJ A;  4A9C A;  5INO A;  3W2X A;  5DV4 A;  4GZ1 A;  3K55 A;  1ZWX A;  4B5G A;  1I9Y A;  4IEM A;  3NGO A;  1Y21 A;  2ISI A;  3NGN A;  4L21 A;  1YJH A;  2UYR X;  3U8U A;  3L1W A;  5DV2 A;  5CFE A;  3GA6 A;  4GZ0 A;  4JG3 A;  2EI9 A;  4LND A;  5J42 A;  3MPR A;  3G2D A;  5DG0 A;  3WCX A;  5INN A;  2J63 A;  5INP A;  2A42 B;  1VYB A;  3G91 A;  3I5V A;  5HT2 A;  3G38 A;  2D1K B;  3W3D B;  1BIX A;  2F1N A;  2DDR A;  4L1Z A;  2V0S A;  4F1H B;  5J3S A;  4B5J A;  1DE8 A;  2IMQ X;  5DFF A;  1DEW A;  2A41 B;  3DNI A;  5INM A;  4AWN A;  1I9Z A;  3G0A A;  4PUQ A;  1WDU A;  4QHD A;  3NR8 A;  2JC4 A;  5J3P A;  2A40 B;  4B5F A;  4C1R A;  2DDS A;  3G00 A;  4QH9 A;  5EWT A;  4FVA A;  1ATN D;  2F2F B;  3CJC D;  3G3C A;  1NTF A;  3TEB A;  3G0R A; 
#chains in the Genus database with same CATH homology
 2V0R A;  1AKO A;  5INQ A;  1DE9 A;  2XSW A;  3G8V A;  3W2Y A;  5CFG A;  5INK A;  3G3Y A;  4GZ2 A;  1SR4 B;  1SI6 X;  5DFI A;  2O3H A;  3MTC A;  1DNK A;  1E9N A;  4B5M A;  5A7I A;  3NGQ A;  4B5H A;  4L20 A;  4K6L F;  4GYZ A;  2O3C A;  4QHE A;  3G4T A;  4F1H A;  4F1I A;  3I48 A;  3G2C A;  3FZI A;  2JC5 A;  3I41 A;  4RUW A;  5J8N A;  2DNJ A;  1HD7 A;  4GEW A;  2A3Z B;  5DFH A;  3N9V A;  3G6S A;  3G1K A;  5A7J A;  2DDT A;  4F1R A;  2VOA A;  5INL A;  4CML A;  3I46 A;  4L1Y A;  4FPV A;  5J3Z A;  4CMN A;  4B5I A;  5DFJ A;  4A9C A;  5INO A;  3W2X A;  5DV4 A;  4GZ1 A;  3K55 A;  1ZWX A;  4B5G A;  1I9Y A;  4IEM A;  3NGO A;  1Y21 A;  2ISI A;  3NGN A;  4L21 A;  1YJH A;  2UYR X;  3U8U A;  3L1W A;  5DV2 A;  5CFE A;  3GA6 A;  4GZ0 A;  4JG3 A;  2EI9 A;  4LND A;  5J42 A;  3MPR A;  3G2D A;  5DG0 A;  3WCX A;  5INN A;  2J63 A;  5INP A;  2A42 B;  1VYB A;  3G91 A;  3I5V A;  5HT2 A;  3G38 A;  2D1K B;  3W3D B;  1BIX A;  2F1N A;  2DDR A;  4L1Z A;  2V0S A;  4F1H B;  5J3S A;  4B5J A;  1DE8 A;  2IMQ X;  5DFF A;  1DEW A;  2A41 B;  3DNI A;  5INM A;  4AWN A;  1I9Z A;  3G0A A;  4PUQ A;  1WDU A;  4QHD A;  3NR8 A;  2JC4 A;  5J3P A;  2A40 B;  4B5F A;  4C1R A;  2DDS A;  3G00 A;  4QH9 A;  5EWT A;  4FVA A;  1ATN D;  2F2F B;  3CJC D;  3G3C A;  1NTF A;  3TEB A;  3G0R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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