4F1RA

Structure analysis of the global metabolic regulator crc from pseudomonas aeruginos
Total Genus 81
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
259
structure length
259
Chain Sequence
MRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPSFQLDGYFLYACDAELPEQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYIYCGSLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSREGDQFSWWPDSEQAEMLNLGWRFDYQVLTPGLRRFVRNAKLPRQPRFSQHAPLIVDYDWQLSI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription regulator
molecule keywords Catabolite repression control protein
publication title Structure analysis of the global metabolic regulator Crc from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 81
structure length 259
sequence length 259
ec nomenclature
pdb deposition date 2012-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 4f1rA00
4F1IA 2DDTA 2A42B 2JC4A 5DV2A 5J42A 3G2DA 5DFIA 4L1YA 3TEBA 1HD7A 5J3ZA 3I41A 4CMNA 4GZ0A 3N9VA 4FPVA 4FVAA 1I9ZA 3G3YA 2JC5A 2A3ZB 4B5MA 3NR8A 5DFFA 2UYRX 4B5JA 5INKA 4AWNA 3K55A 5DFHA 1DNKA 2O3HA 3G91A 5INLA 4A9CA 2IMQX 4L1ZA 1VYBA 2O3CA 3G38A 5INPA 1DE8A 3U8UA 1ATND 5CFEA 2VOAA 3I5VA 3W2XA 1SI6X 4PUQA 5INNA 2V0SA 4QH9A 5INMA 4K6LF 1SR4B 3G3CA 4GEWA 5EWTA 1I9YA 5J3SA 1YJHA 3G0RA 3G2CA 3W3DB 5J8NA 3L1WA 3FZIA 4B5FA 2DDRA 5DG0A 3NGOA 4L21A 1AKOA 2DDSA 4GYZA 4F1HA 1DEWA 3I46A 2F1NA 3W2YA 3NGNA 4RUWA 5A7JA 4B5HA 2ISIA 5INOA 3G4TA 2A40B 4CMLA 3I48A 1Y21A 4F1RA 4B5GA 3G00A 4JG3A 4F1HB 2EI9A 1E9NA 3MTCA 4C1RA 2XSWA 3WCXA 3GA6A 2D1KB 4IEMA 1NTFA 4L20A 5DFJA 5HT2A 2DNJA 4QHDA 3G6SA 5INQA 1BIXA 1ZWXA 1DE9A 3DNIA 3CJCD 5A7IA 3NGQA 5CFGA 3G0AA 1WDUA 2A41B 3G1KA 4GZ1A 3MPRA 4GZ2A 3G8VA 2F2FB 2V0RA 4LNDA 2J63A 4B5IA 4QHEA 5J3PA 5DV4A
chains in the Genus database with same CATH superfamily
4F1IA 2DDTA 2A42B 2JC4A 5DV2A 5J42A 3G2DA 5DFIA 4L1YA 3TEBA 1HD7A 5J3ZA 3I41A 4CMNA 4GZ0A 3N9VA 4FPVA 4FVAA 1I9ZA 3G3YA 2JC5A 2A3ZB 4B5MA 3NR8A 5DFFA 2UYRX 4B5JA 5INKA 4AWNA 3K55A 5DFHA 1DNKA 2O3HA 3G91A 5INLA 4A9CA 2IMQX 4L1ZA 1VYBA 2O3CA 3G38A 5INPA 1DE8A 3U8UA 1ATND 5CFEA 2VOAA 3I5VA 3W2XA 1SI6X 4PUQA 5INNA 2V0SA 4QH9A 5INMA 4K6LF 1SR4B 3G3CA 4GEWA 5EWTA 1I9YA 5J3SA 1YJHA 3G0RA 3G2CA 3W3DB 5J8NA 3L1WA 3FZIA 4B5FA 2DDRA 5DG0A 3NGOA 4L21A 1AKOA 2DDSA 4GYZA 4F1HA 1DEWA 3I46A 2F1NA 3W2YA 3NGNA 4RUWA 5A7JA 4B5HA 2ISIA 5INOA 3G4TA 2A40B 4CMLA 3I48A 1Y21A 4F1RA 4B5GA 3G00A 4JG3A 4F1HB 2EI9A 1E9NA 3MTCA 4C1RA 2XSWA 3WCXA 3GA6A 2D1KB 4IEMA 1NTFA 4L20A 5DFJA 5HT2A 2DNJA 4QHDA 3G6SA 5INQA 1BIXA 1ZWXA 1DE9A 3DNIA 3CJCD 5A7IA 3NGQA 5CFGA 3G0AA 1WDUA 2A41B 3G1KA 4GZ1A 3MPRA 4GZ2A 3G8VA 2F2FB 2V0RA 4LNDA 2J63A 4B5IA 4QHEA 5J3PA 5DV4A
chains in the Genus database with same CATH topology
4F1IA 2DDTA 2A42B 2JC4A 5DV2A 5J42A 3G2DA 5DFIA 4L1YA 3TEBA 1HD7A 5J3ZA 3I41A 4CMNA 4GZ0A 3N9VA 4FPVA 4FVAA 1I9ZA 3G3YA 2JC5A 2A3ZB 4B5MA 3NR8A 5DFFA 2UYRX 4B5JA 5INKA 4AWNA 3K55A 5DFHA 1DNKA 2O3HA 3G91A 5INLA 4A9CA 2IMQX 4L1ZA 1VYBA 2O3CA 3G38A 5INPA 1DE8A 3U8UA 1ATND 5CFEA 2VOAA 3I5VA 3W2XA 1SI6X 4PUQA 5INNA 2V0SA 4QH9A 5INMA 4K6LF 1SR4B 3G3CA 4GEWA 5EWTA 1I9YA 5J3SA 1YJHA 3G0RA 3G2CA 3W3DB 5J8NA 3L1WA 3FZIA 4B5FA 2DDRA 5DG0A 3NGOA 4L21A 1AKOA 2DDSA 4GYZA 4F1HA 1DEWA 3I46A 2F1NA 3W2YA 3NGNA 4RUWA 5A7JA 4B5HA 2ISIA 5INOA 3G4TA 2A40B 4CMLA 3I48A 1Y21A 4F1RA 4B5GA 3G00A 4JG3A 4F1HB 2EI9A 1E9NA 3MTCA 4C1RA 2XSWA 3WCXA 3GA6A 2D1KB 4IEMA 1NTFA 4L20A 5DFJA 5HT2A 2DNJA 4QHDA 3G6SA 5INQA 1BIXA 1ZWXA 1DE9A 3DNIA 3CJCD 5A7IA 3NGQA 5CFGA 3G0AA 1WDUA 2A41B 3G1KA 4GZ1A 3MPRA 4GZ2A 3G8VA 2F2FB 2V0RA 4LNDA 2J63A 4B5IA 4QHEA 5J3PA 5DV4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F1I A;  2DDT A;  2A42 B;  2JC4 A;  5DV2 A;  5J42 A;  3G2D A;  5DFI A;  4L1Y A;  3TEB A;  1HD7 A;  5J3Z A;  3I41 A;  4CMN A;  4GZ0 A;  3N9V A;  4FPV A;  4FVA A;  1I9Z A;  3G3Y A;  2JC5 A;  2A3Z B;  4B5M A;  3NR8 A;  5DFF A;  2UYR X;  4B5J A;  5INK A;  4AWN A;  3K55 A;  5DFH A;  1DNK A;  2O3H A;  3G91 A;  5INL A;  4A9C A;  2IMQ X;  4L1Z A;  1VYB A;  2O3C A;  3G38 A;  5INP A;  1DE8 A;  3U8U A;  1ATN D;  5CFE A;  2VOA A;  3I5V A;  3W2X A;  1SI6 X;  4PUQ A;  5INN A;  2V0S A;  4QH9 A;  5INM A;  4K6L F;  1SR4 B;  3G3C A;  4GEW A;  5EWT A;  1I9Y A;  5J3S A;  1YJH A;  3G0R A;  3G2C A;  3W3D B;  5J8N A;  3L1W A;  3FZI A;  4B5F A;  2DDR A;  5DG0 A;  3NGO A;  4L21 A;  1AKO A;  2DDS A;  4GYZ A;  4F1H A;  1DEW A;  3I46 A;  2F1N A;  3W2Y A;  3NGN A;  4RUW A;  5A7J A;  4B5H A;  2ISI A;  5INO A;  3G4T A;  2A40 B;  4CML A;  3I48 A;  1Y21 A;  4F1R A;  4B5G A;  3G00 A;  4JG3 A;  4F1H B;  2EI9 A;  1E9N A;  3MTC A;  4C1R A;  2XSW A;  3WCX A;  3GA6 A;  2D1K B;  4IEM A;  1NTF A;  4L20 A;  5DFJ A;  5HT2 A;  2DNJ A;  4QHD A;  3G6S A;  5INQ A;  1BIX A;  1ZWX A;  1DE9 A;  3DNI A;  3CJC D;  5A7I A;  3NGQ A;  5CFG A;  3G0A A;  1WDU A;  2A41 B;  3G1K A;  4GZ1 A;  3MPR A;  4GZ2 A;  3G8V A;  2F2F B;  2V0R A;  4LND A;  2J63 A;  4B5I A;  4QHE A;  5J3P A;  5DV4 A; 
#chains in the Genus database with same CATH topology
 4F1I A;  2DDT A;  2A42 B;  2JC4 A;  5DV2 A;  5J42 A;  3G2D A;  5DFI A;  4L1Y A;  3TEB A;  1HD7 A;  5J3Z A;  3I41 A;  4CMN A;  4GZ0 A;  3N9V A;  4FPV A;  4FVA A;  1I9Z A;  3G3Y A;  2JC5 A;  2A3Z B;  4B5M A;  3NR8 A;  5DFF A;  2UYR X;  4B5J A;  5INK A;  4AWN A;  3K55 A;  5DFH A;  1DNK A;  2O3H A;  3G91 A;  5INL A;  4A9C A;  2IMQ X;  4L1Z A;  1VYB A;  2O3C A;  3G38 A;  5INP A;  1DE8 A;  3U8U A;  1ATN D;  5CFE A;  2VOA A;  3I5V A;  3W2X A;  1SI6 X;  4PUQ A;  5INN A;  2V0S A;  4QH9 A;  5INM A;  4K6L F;  1SR4 B;  3G3C A;  4GEW A;  5EWT A;  1I9Y A;  5J3S A;  1YJH A;  3G0R A;  3G2C A;  3W3D B;  5J8N A;  3L1W A;  3FZI A;  4B5F A;  2DDR A;  5DG0 A;  3NGO A;  4L21 A;  1AKO A;  2DDS A;  4GYZ A;  4F1H A;  1DEW A;  3I46 A;  2F1N A;  3W2Y A;  3NGN A;  4RUW A;  5A7J A;  4B5H A;  2ISI A;  5INO A;  3G4T A;  2A40 B;  4CML A;  3I48 A;  1Y21 A;  4F1R A;  4B5G A;  3G00 A;  4JG3 A;  4F1H B;  2EI9 A;  1E9N A;  3MTC A;  4C1R A;  2XSW A;  3WCX A;  3GA6 A;  2D1K B;  4IEM A;  1NTF A;  4L20 A;  5DFJ A;  5HT2 A;  2DNJ A;  4QHD A;  3G6S A;  5INQ A;  1BIX A;  1ZWX A;  1DE9 A;  3DNI A;  3CJC D;  5A7I A;  3NGQ A;  5CFG A;  3G0A A;  1WDU A;  2A41 B;  3G1K A;  4GZ1 A;  3MPR A;  4GZ2 A;  3G8V A;  2F2F B;  2V0R A;  4LND A;  2J63 A;  4B5I A;  4QHE A;  5J3P A;  5DV4 A; 
#chains in the Genus database with same CATH homology
 4F1I A;  2DDT A;  2A42 B;  2JC4 A;  5DV2 A;  5J42 A;  3G2D A;  5DFI A;  4L1Y A;  3TEB A;  1HD7 A;  5J3Z A;  3I41 A;  4CMN A;  4GZ0 A;  3N9V A;  4FPV A;  4FVA A;  1I9Z A;  3G3Y A;  2JC5 A;  2A3Z B;  4B5M A;  3NR8 A;  5DFF A;  2UYR X;  4B5J A;  5INK A;  4AWN A;  3K55 A;  5DFH A;  1DNK A;  2O3H A;  3G91 A;  5INL A;  4A9C A;  2IMQ X;  4L1Z A;  1VYB A;  2O3C A;  3G38 A;  5INP A;  1DE8 A;  3U8U A;  1ATN D;  5CFE A;  2VOA A;  3I5V A;  3W2X A;  1SI6 X;  4PUQ A;  5INN A;  2V0S A;  4QH9 A;  5INM A;  4K6L F;  1SR4 B;  3G3C A;  4GEW A;  5EWT A;  1I9Y A;  5J3S A;  1YJH A;  3G0R A;  3G2C A;  3W3D B;  5J8N A;  3L1W A;  3FZI A;  4B5F A;  2DDR A;  5DG0 A;  3NGO A;  4L21 A;  1AKO A;  2DDS A;  4GYZ A;  4F1H A;  1DEW A;  3I46 A;  2F1N A;  3W2Y A;  3NGN A;  4RUW A;  5A7J A;  4B5H A;  2ISI A;  5INO A;  3G4T A;  2A40 B;  4CML A;  3I48 A;  1Y21 A;  4F1R A;  4B5G A;  3G00 A;  4JG3 A;  4F1H B;  2EI9 A;  1E9N A;  3MTC A;  4C1R A;  2XSW A;  3WCX A;  3GA6 A;  2D1K B;  4IEM A;  1NTF A;  4L20 A;  5DFJ A;  5HT2 A;  2DNJ A;  4QHD A;  3G6S A;  5INQ A;  1BIX A;  1ZWX A;  1DE9 A;  3DNI A;  3CJC D;  5A7I A;  3NGQ A;  5CFG A;  3G0A A;  1WDU A;  2A41 B;  3G1K A;  4GZ1 A;  3MPR A;  4GZ2 A;  3G8V A;  2F2F B;  2V0R A;  4LND A;  2J63 A;  4B5I A;  4QHE A;  5J3P A;  5DV4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...