4F41A

Protelomerase tela mutant r255a complexed with cttg hairpin dna
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
319
structure length
319
Chain Sequence
YPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRAPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSYMTYTLPEDRDNALARL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Linear Chromosome-generating System of Agrobacterium tumefaciens C58: PROTELOMERASE GENERATES AND PROTECTS HAIRPIN ENDS.
pubmed doi rcsb
molecule tags Recombination/dna
source organism Agrobacterium tumefaciens
molecule keywords Protelomerase
total genus 99
structure length 319
sequence length 319
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4f41A02
4E10A 4E0JA 4F41A 4F43A 4E0YA 4DWPA 2V6EA 4E0GA 4E0ZA 4E0PA
chains in the Genus database with same CATH superfamily
4A8EA 1P4EA 3SQIA 1FLOA 2HOIA 2V6EA 3T79A 2CRXA 5DCFA 3MGVA 1Q3UA 1CRXA 4E0JA 1PVRA 1AIHA 1Z19A 1Q3VA 1F44A 3CRXA 3C28A 5CRXA 1XO0A 2HOFA 4CRXA 1A0PA 3NKHA 1XNSA 3UXUA 1AE9A 4E10A 4DKSA 4F41A 1M6XC 4F43A 1M6XA 1PVPA 2A3VA 4E0YA 1OUQA 1KBUA 3C29A 1DRGA 5DORA 1MA7A 4ACOA 4E0PA 4E0ZA 1NZBA 5C6KA 1P7DA 1PVQA 1Z1BA 4DWPA 1P4EC 3VCFA 4E0GA
chains in the Genus database with same CATH topology
4E10A 4E0JA 4F41A 3SQIA 4F43A 4E0YA 4DWPA 2V6EA 4E0GA 3T79A 4ACOA 4E0ZA 4E0PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E10 A;  4E0J A;  4F41 A;  4F43 A;  4E0Y A;  4DWP A;  2V6E A;  4E0G A;  4E0Z A;  4E0P A; 
#chains in the Genus database with same CATH topology
 4A8E A;  1P4E A;  3SQI A;  1FLO A;  2HOI A;  2V6E A;  3T79 A;  2CRX A;  5DCF A;  3MGV A;  1Q3U A;  1CRX A;  4E0J A;  1PVR A;  1AIH A;  1Z19 A;  1Q3V A;  1F44 A;  3CRX A;  3C28 A;  5CRX A;  1XO0 A;  2HOF A;  4CRX A;  1A0P A;  3NKH A;  1XNS A;  3UXU A;  1AE9 A;  4E10 A;  4DKS A;  4F41 A;  1M6X C;  4F43 A;  1M6X A;  1PVP A;  2A3V A;  4E0Y A;  1OUQ A;  1KBU A;  3C29 A;  1DRG A;  5DOR A;  1MA7 A;  4ACO A;  4E0P A;  4E0Z A;  1NZB A;  5C6K A;  1P7D A;  1PVQ A;  1Z1B A;  4DWP A;  1P4E C;  3VCF A;  4E0G A; 
#chains in the Genus database with same CATH homology
 4E10 A;  4E0J A;  4F41 A;  3SQI A;  4F43 A;  4E0Y A;  4DWP A;  2V6E A;  4E0G A;  3T79 A;  4ACO A;  4E0Z A;  4E0P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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