4F44A

Neurotrophin p75ntr intracellular domain
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
83
structure length
83
Chain Sequence
NLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADIVESLCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Tumor necrosis factor receptor superfamily member 16
publication title Structural insights into the allosteric activation mechanism of p75NTR
rcsb
source organism Rattus norvegicus
total genus 26
structure length 83
sequence length 83
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4f44A00
2N80A 2BBRA 4N1JA 2NZ7A 4IZ5E 2DBHA 2MN4A 2OF5A 2N97A 4JUPA 1YGOA 2G7RA 4ZBWA 2M5VA 1E3YA 4DWNA 1Z6TA 2KM6A 4RHWE 4M9XA 3J63A 4UZ0A 4O9FA 2L9MA 1WMGA 4N1KA 1A1ZA 2NSNA 2N7ZA 4NQKA 4RHWA 1NGRA 2GF5A 2A5YB 4FH0A 3MOPK 2YVIA 4A2QA 1WH4A 2N00A 4O9LA 4P4HA 4P4HI 2NAQA 3LQRA 1E41A 2MS7A 1WXPA 1C15A 4EWIA 2O71A 4IZAB 2A9IA 2MPCA 2YQFA 4IZ7B 4E9MA 3YGSC 4F42A 4O6XA 2N1FA 2MB9A 3QF2A 4QOBA 2DBFA 4N1LA 4M9ZA 2N83A 4M9SA 2F1SA 2YGSA 2DBDA 3EZQB 1DGNA 2L6AA 2LWEA 3KATA 2YU0A 3MOPG 2OF5H 4LWDA 2IB1A 2P1HA 1ICHA 4A2WA 2LS7A 2BBZA 3EZQA 1UCPA 1FADA 3J6JA 1N3KA 3YGSP 1A1WA 3CRDA 3CL3A 3T6PA 1PN5A 4O7QA 2KN6A 1D2ZA 2MS8A 1DDFA 2DBGA 4JQWA 2D96A 2B1WA 4I16A 1CWWA 2DO9A 1CY5A 2LWDA 3LQQA 2HM2Q 4D8OA 4F44A 3MOPA 1D2ZB 2VGQA
chains in the Genus database with same CATH superfamily
2N80A 2BBRA 4N1JA 2NZ7A 4IZ5E 2DBHA 2MN4A 2OF5A 2N97A 4JUPA 1YGOA 2G7RA 4ZBWA 2M5VA 1E3YA 4DWNA 1Z6TA 2KM6A 4RHWE 2XV9A 4M9XA 3J63A 4UZ0A 4O9FA 2L9MA 1WMGA 4N1KA 1A1ZA 2NSNA 2N7ZA 4NQKA 4RHWA 1NGRA 2GF5A 2A5YB 4FH0A 3MOPK 2YVIA 4A2QA 1WH4A 2N00A 4O9LA 4P4HA 4P4HI 2NAQA 3LQRA 1E41A 2MS7A 1WXPA 1C15A 4EWIA 2O71A 4IZAB 2A9IA 2MPCA 2YQFA 4IZ7B 4E9MA 3YGSC 4F42A 4O6XA 2N1FA 2MB9A 3QF2A 4QOBA 2DBFA 4N1LA 4M9ZA 2N83A 4M9SA 2F1SA 2YGSA 2DBDA 3EZQB 1DGNA 2L6AA 2LWEA 3KATA 2YU0A 3MOPG 2OF5H 4LWDA 2IB1A 2P1HA 1ICHA 4A2WA 2LS7A 2BBZA 3EZQA 1UCPA 1FADA 3J6JA 1N3KA 3YGSP 1A1WA 3CRDA 3CL3A 3T6PA 1PN5A 4O7QA 2MJMA 2KN6A 1D2ZA 2MS8A 1DDFA 2DBGA 4JQWA 2D96A 2B1WA 4I16A 1CWWA 2DO9A 1CY5A 2LWDA 3LQQA 2HM2Q 4D8OA 4F44A 3MOPA 1D2ZB 2VGQA
chains in the Genus database with same CATH topology
2N80A 2BBRA 4N1JA 2NZ7A 4IZ5E 2DBHA 2MN4A 2OF5A 2N97A 4JUPA 1YGOA 2G7RA 4ZBWA 2M5VA 1E3YA 4DWNA 1Z6TA 2KM6A 4RHWE 2XV9A 4M9XA 3J63A 4UZ0A 4O9FA 2L9MA 1WMGA 4N1KA 1A1ZA 2NSNA 2N7ZA 4NQKA 4RHWA 1NGRA 2GF5A 2A5YB 4FH0A 3MOPK 2YVIA 4A2QA 1WH4A 2N00A 4O9LA 4P4HA 4P4HI 2NAQA 3LQRA 1E41A 2MS7A 1WXPA 1C15A 4EWIA 2O71A 4IZAB 2A9IA 2MPCA 2YQFA 4IZ7B 4E9MA 3YGSC 4F42A 4O6XA 2N1FA 2MB9A 3QF2A 4QOBA 2DBFA 4N1LA 4M9ZA 2N83A 4M9SA 2F1SA 2YGSA 2DBDA 3EZQB 1DGNA 2L6AA 2LWEA 3KATA 2YU0A 3MOPG 2OF5H 4LWDA 2IB1A 2P1HA 1ICHA 4A2WA 2LS7A 2BBZA 3EZQA 1UCPA 1FADA 3J6JA 1N3KA 3YGSP 1A1WA 3CRDA 3CL3A 3T6PA 1PN5A 4O7QA 2MJMA 2KN6A 1D2ZA 2MS8A 1DDFA 2DBGA 4JQWA 2D96A 2B1WA 4I16A 1CWWA 2DO9A 1CY5A 2LWDA 3LQQA 2HM2Q 4D8OA 4F44A 3MOPA 1D2ZB 2VGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N80 A;  2BBR A;  4N1J A;  2NZ7 A;  4IZ5 E;  2DBH A;  2MN4 A;  2OF5 A;  2N97 A;  4JUP A;  1YGO A;  2G7R A;  4ZBW A;  2M5V A;  1E3Y A;  4DWN A;  1Z6T A;  2KM6 A;  4RHW E;  4M9X A;  3J63 A;  4UZ0 A;  4O9F A;  2L9M A;  1WMG A;  4N1K A;  1A1Z A;  2NSN A;  2N7Z A;  4NQK A;  4RHW A;  1NGR A;  2GF5 A;  2A5Y B;  4FH0 A;  3MOP K;  2YVI A;  4A2Q A;  1WH4 A;  2N00 A;  4O9L A;  4P4H A;  4P4H I;  2NAQ A;  3LQR A;  1E41 A;  2MS7 A;  1WXP A;  1C15 A;  4EWI A;  2O71 A;  4IZA B;  2A9I A;  2MPC A;  2YQF A;  4IZ7 B;  4E9M A;  3YGS C;  4F42 A;  4O6X A;  2N1F A;  2MB9 A;  3QF2 A;  4QOB A;  2DBF A;  4N1L A;  4M9Z A;  2N83 A;  4M9S A;  2F1S A;  2YGS A;  2DBD A;  3EZQ B;  1DGN A;  2L6A A;  2LWE A;  3KAT A;  2YU0 A;  3MOP G;  2OF5 H;  4LWD A;  2IB1 A;  2P1H A;  1ICH A;  4A2W A;  2LS7 A;  2BBZ A;  3EZQ A;  1UCP A;  1FAD A;  3J6J A;  1N3K A;  3YGS P;  1A1W A;  3CRD A;  3CL3 A;  3T6P A;  1PN5 A;  4O7Q A;  2KN6 A;  1D2Z A;  2MS8 A;  1DDF A;  2DBG A;  4JQW A;  2D96 A;  2B1W A;  4I16 A;  1CWW A;  2DO9 A;  1CY5 A;  2LWD A;  3LQQ A;  2HM2 Q;  4D8O A;  4F44 A;  3MOP A;  1D2Z B;  2VGQ A; 
#chains in the Genus database with same CATH topology
 2N80 A;  2BBR A;  4N1J A;  2NZ7 A;  4IZ5 E;  2DBH A;  2MN4 A;  2OF5 A;  2N97 A;  4JUP A;  1YGO A;  2G7R A;  4ZBW A;  2M5V A;  1E3Y A;  4DWN A;  1Z6T A;  2KM6 A;  4RHW E;  2XV9 A;  4M9X A;  3J63 A;  4UZ0 A;  4O9F A;  2L9M A;  1WMG A;  4N1K A;  1A1Z A;  2NSN A;  2N7Z A;  4NQK A;  4RHW A;  1NGR A;  2GF5 A;  2A5Y B;  4FH0 A;  3MOP K;  2YVI A;  4A2Q A;  1WH4 A;  2N00 A;  4O9L A;  4P4H A;  4P4H I;  2NAQ A;  3LQR A;  1E41 A;  2MS7 A;  1WXP A;  1C15 A;  4EWI A;  2O71 A;  4IZA B;  2A9I A;  2MPC A;  2YQF A;  4IZ7 B;  4E9M A;  3YGS C;  4F42 A;  4O6X A;  2N1F A;  2MB9 A;  3QF2 A;  4QOB A;  2DBF A;  4N1L A;  4M9Z A;  2N83 A;  4M9S A;  2F1S A;  2YGS A;  2DBD A;  3EZQ B;  1DGN A;  2L6A A;  2LWE A;  3KAT A;  2YU0 A;  3MOP G;  2OF5 H;  4LWD A;  2IB1 A;  2P1H A;  1ICH A;  4A2W A;  2LS7 A;  2BBZ A;  3EZQ A;  1UCP A;  1FAD A;  3J6J A;  1N3K A;  3YGS P;  1A1W A;  3CRD A;  3CL3 A;  3T6P A;  1PN5 A;  4O7Q A;  2MJM A;  2KN6 A;  1D2Z A;  2MS8 A;  1DDF A;  2DBG A;  4JQW A;  2D96 A;  2B1W A;  4I16 A;  1CWW A;  2DO9 A;  1CY5 A;  2LWD A;  3LQQ A;  2HM2 Q;  4D8O A;  4F44 A;  3MOP A;  1D2Z B;  2VGQ A; 
#chains in the Genus database with same CATH homology
 2N80 A;  2BBR A;  4N1J A;  2NZ7 A;  4IZ5 E;  2DBH A;  2MN4 A;  2OF5 A;  2N97 A;  4JUP A;  1YGO A;  2G7R A;  4ZBW A;  2M5V A;  1E3Y A;  4DWN A;  1Z6T A;  2KM6 A;  4RHW E;  2XV9 A;  4M9X A;  3J63 A;  4UZ0 A;  4O9F A;  2L9M A;  1WMG A;  4N1K A;  1A1Z A;  2NSN A;  2N7Z A;  4NQK A;  4RHW A;  1NGR A;  2GF5 A;  2A5Y B;  4FH0 A;  3MOP K;  2YVI A;  4A2Q A;  1WH4 A;  2N00 A;  4O9L A;  4P4H A;  4P4H I;  2NAQ A;  3LQR A;  1E41 A;  2MS7 A;  1WXP A;  1C15 A;  4EWI A;  2O71 A;  4IZA B;  2A9I A;  2MPC A;  2YQF A;  4IZ7 B;  4E9M A;  3YGS C;  4F42 A;  4O6X A;  2N1F A;  2MB9 A;  3QF2 A;  4QOB A;  2DBF A;  4N1L A;  4M9Z A;  2N83 A;  4M9S A;  2F1S A;  2YGS A;  2DBD A;  3EZQ B;  1DGN A;  2L6A A;  2LWE A;  3KAT A;  2YU0 A;  3MOP G;  2OF5 H;  4LWD A;  2IB1 A;  2P1H A;  1ICH A;  4A2W A;  2LS7 A;  2BBZ A;  3EZQ A;  1UCP A;  1FAD A;  3J6J A;  1N3K A;  3YGS P;  1A1W A;  3CRD A;  3CL3 A;  3T6P A;  1PN5 A;  4O7Q A;  2MJM A;  2KN6 A;  1D2Z A;  2MS8 A;  1DDF A;  2DBG A;  4JQW A;  2D96 A;  2B1W A;  4I16 A;  1CWW A;  2DO9 A;  1CY5 A;  2LWD A;  3LQQ A;  2HM2 Q;  4D8O A;  4F44 A;  3MOP A;  1D2Z B;  2VGQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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