4F7OA

Crystal structure of csn5
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
256
structure length
235
Chain Sequence
AASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords COP9 signalosome complex subunit 5
publication title Insights into the regulation of the human COP9 signalosome catalytic subunit, CSN5/Jab1.
pubmed doi rcsb
source organism Homo sapiens
total genus 59
structure length 235
sequence length 256
chains with identical sequence B
ec nomenclature ec 3.4.-.-:
pdb deposition date 2012-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01398 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4f7oA00
1MQ0A 4P9CA 2ZNRA 4QFTA 3ZPCA 1JTKA 3DMOA 3IJFX 4BGDC 4O8YB 4F3WA 5M59B 1RB7A 4O8XA 2NYTA 4P9DA 3B8FA 4LD2A 3RZUA 2PW9A 3MPZA 2D5NA 2O7PA 3DH1A 1TIYA 4LC5A 1P6OA 1WKQA 2G6VA 3OJ6A 5GAOA 2P87A 4OCLA 4WIGA 4PQTA 1UAQA 2W4LA 4E0QA 4LCOA 4OCMA 2OBCA 2FR6A 4LCNA 1CTUA 2KCQA 1WN5A 2HVVA 4F7OA 4O8XB 4P9EA 2NX8A 2P8RA 1CTTA 4OWPA 5DCAJ 2D30A 1UX0A 3RZVA 2B3JA 4G3MA 4NQLA 4OCLB 2QLCA 1ALNA 2FR5A 3OCQA 1VQ2A 3EX8A 4MSJA 4MSMA 2RPZA 5CW6A 4OCMB 1Z3AA 2B3ZA 2O3KA 4O8YA 4OCNA 4WIFA 4HRQA 5C2OA 1WWRA 4MS7A 4LD4A 4ZFRA 2OG4A 1AF2A 2Z3HA 1OI0A 1R5TA 2ZNVA 2G84A 2KKSA 3SBGA 2Z3JA 4EG2A 4MSQA 4JXEA 4MSDA 2HVWA 2O95A 4LCPA 1OX7A 2HXVA 4OCNB 1R5XA 4K1RA 4ZD5A 1YSBA 2Z3GA 3ZPGA 3ZEFB 3R2NA 3G8QA 2Z3IA 5M52C 3E1UA 4HRWA 1WN6A 1ZABA 4OWPB 4I43B 1YSDA 1UX1A 4ILGC 4ZD4A 2O96A 2A8NA 1UWZA 4ZFTA 4D10F 4KITC
chains in the Genus database with same CATH superfamily
1MQ0A 4P9CA 2ZNRA 4QFTA 3ZPCA 1VK9A 1JTKA 3DMOA 4EHIA 3IJFX 4BGDC 4O8YB 4F3WA 5M59B 1RB7A 4O8XA 2NYTA 4P9DA 3B8FA 4LD2A 3RZUA 2PW9A 3MPZA 2D5NA 2O7PA 3DH1A 1TIYA 4LC5A 1P6OA 1WKQA 2G6VA 3OJ6A 5GAOA 2P87A 4OCLA 4WIGA 4PQTA 1UAQA 2W4LA 4E0QA 4LCOA 4OCMA 2OBCA 2FR6A 4LCNA 1PKXA 4A1OA 1CTUA 2KCQA 1WN5A 2HVVA 4F7OA 4O8XB 4P9EA 2B1GA 2NX8A 2P8RA 1CTTA 4OWPA 2B1IA 3ZZMA 5DCAJ 2D30A 1G8MA 1UX0A 3RZVA 2B3JA 1THZA 4G3MA 4NQLA 4OCLB 2QLCA 1ALNA 2FR5A 3OCQA 2IU0A 1VQ2A 3EX8A 4MSJA 4MSMA 4J6EA 2RPZA 5CW6A 4OCMB 1Z3AA 2B3ZA 2O3KA 4O8YA 4OCNA 4WIFA 4HRQA 5C2OA 1WWRA 4MS7A 4LD4A 1OZ0A 4ZFRA 2OG4A 1AF2A 2IU3A 2Z3HA 1OI0A 1M9NA 1R5TA 2ZNVA 2G84A 2KKSA 3VX8A 3SBGA 2Z3JA 4EG2A 4MSQA 4JXEA 4MSDA 2HVWA 4GGMX 1PL0A 2O95A 4LCPA 1OX7A 2HXVA 4OCNB 1P4RA 1R5XA 4K1RA 4ZD5A 3BH1A 1YSBA 2Z3GA 3ZPGA 3ZEFB 3R2NA 3G8QA 2Z3IA 5M52C 3E1UA 4HRWA 1WN6A 1ZABA 4OWPB 4I43B 1YSDA 1UX1A 4ILGC 4ZD4A 2O96A 2A8NA 1UWZA 4ZFTA 4D10F 4KITC 1ZCZA
chains in the Genus database with same CATH topology
1MQ0A 4P9CA 2ZNRA 4QFTA 3ZPCA 1JTKA 3DMOA 3IJFX 4BGDC 4O8YB 4F3WA 5M59B 1RB7A 4O8XA 2NYTA 4P9DA 3B8FA 4LD2A 3RZUA 2PW9A 3MPZA 2D5NA 2O7PA 3DH1A 1TIYA 4LC5A 1P6OA 1WKQA 2G6VA 3OJ6A 5GAOA 2P87A 4OCLA 4WIGA 4PQTA 1UAQA 2W4LA 4E0QA 4LCOA 4OCMA 2OBCA 2FR6A 4LCNA 1CTUA 2KCQA 1WN5A 2HVVA 4F7OA 4O8XB 4P9EA 2NX8A 2P8RA 1CTTA 4OWPA 5DCAJ 2D30A 1UX0A 3RZVA 2B3JA 4G3MA 4NQLA 4OCLB 2QLCA 1ALNA 2FR5A 3OCQA 1VQ2A 3EX8A 4MSJA 4MSMA 2RPZA 5CW6A 4OCMB 1Z3AA 2B3ZA 2O3KA 4O8YA 4OCNA 4WIFA 4HRQA 5C2OA 1WWRA 4MS7A 4LD4A 4ZFRA 2OG4A 1AF2A 2Z3HA 1OI0A 1R5TA 2ZNVA 2G84A 2KKSA 3SBGA 2Z3JA 4EG2A 4MSQA 4JXEA 4MSDA 2HVWA 2O95A 4LCPA 1OX7A 2HXVA 4OCNB 1R5XA 4K1RA 4ZD5A 1YSBA 2Z3GA 3ZPGA 3ZEFB 3R2NA 3G8QA 2Z3IA 5M52C 3E1UA 4HRWA 1WN6A 1ZABA 4OWPB 4I43B 1YSDA 1UX1A 4ILGC 4ZD4A 2O96A 2A8NA 1UWZA 4ZFTA 4D10F 4KITC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MQ0 A;  4P9C A;  2ZNR A;  4QFT A;  3ZPC A;  1JTK A;  3DMO A;  3IJF X;  4BGD C;  4O8Y B;  4F3W A;  5M59 B;  1RB7 A;  4O8X A;  2NYT A;  4P9D A;  3B8F A;  4LD2 A;  3RZU A;  2PW9 A;  3MPZ A;  2D5N A;  2O7P A;  3DH1 A;  1TIY A;  4LC5 A;  1P6O A;  1WKQ A;  2G6V A;  3OJ6 A;  5GAO A;  2P87 A;  4OCL A;  4WIG A;  4PQT A;  1UAQ A;  2W4L A;  4E0Q A;  4LCO A;  4OCM A;  2OBC A;  2FR6 A;  4LCN A;  1CTU A;  2KCQ A;  1WN5 A;  2HVV A;  4F7O A;  4O8X B;  4P9E A;  2NX8 A;  2P8R A;  1CTT A;  4OWP A;  5DCA J;  2D30 A;  1UX0 A;  3RZV A;  2B3J A;  4G3M A;  4NQL A;  4OCL B;  2QLC A;  1ALN A;  2FR5 A;  3OCQ A;  1VQ2 A;  3EX8 A;  4MSJ A;  4MSM A;  2RPZ A;  5CW6 A;  4OCM B;  1Z3A A;  2B3Z A;  2O3K A;  4O8Y A;  4OCN A;  4WIF A;  4HRQ A;  5C2O A;  1WWR A;  4MS7 A;  4LD4 A;  4ZFR A;  2OG4 A;  1AF2 A;  2Z3H A;  1OI0 A;  1R5T A;  2ZNV A;  2G84 A;  2KKS A;  3SBG A;  2Z3J A;  4EG2 A;  4MSQ A;  4JXE A;  4MSD A;  2HVW A;  2O95 A;  4LCP A;  1OX7 A;  2HXV A;  4OCN B;  1R5X A;  4K1R A;  4ZD5 A;  1YSB A;  2Z3G A;  3ZPG A;  3ZEF B;  3R2N A;  3G8Q A;  2Z3I A;  5M52 C;  3E1U A;  4HRW A;  1WN6 A;  1ZAB A;  4OWP B;  4I43 B;  1YSD A;  1UX1 A;  4ILG C;  4ZD4 A;  2O96 A;  2A8N A;  1UWZ A;  4ZFT A;  4D10 F;  4KIT C; 
#chains in the Genus database with same CATH topology
 1MQ0 A;  4P9C A;  2ZNR A;  4QFT A;  3ZPC A;  1VK9 A;  1JTK A;  3DMO A;  4EHI A;  3IJF X;  4BGD C;  4O8Y B;  4F3W A;  5M59 B;  1RB7 A;  4O8X A;  2NYT A;  4P9D A;  3B8F A;  4LD2 A;  3RZU A;  2PW9 A;  3MPZ A;  2D5N A;  2O7P A;  3DH1 A;  1TIY A;  4LC5 A;  1P6O A;  1WKQ A;  2G6V A;  3OJ6 A;  5GAO A;  2P87 A;  4OCL A;  4WIG A;  4PQT A;  1UAQ A;  2W4L A;  4E0Q A;  4LCO A;  4OCM A;  2OBC A;  2FR6 A;  4LCN A;  1PKX A;  4A1O A;  1CTU A;  2KCQ A;  1WN5 A;  2HVV A;  4F7O A;  4O8X B;  4P9E A;  2B1G A;  2NX8 A;  2P8R A;  1CTT A;  4OWP A;  2B1I A;  3ZZM A;  5DCA J;  2D30 A;  1G8M A;  1UX0 A;  3RZV A;  2B3J A;  1THZ A;  4G3M A;  4NQL A;  4OCL B;  2QLC A;  1ALN A;  2FR5 A;  3OCQ A;  2IU0 A;  1VQ2 A;  3EX8 A;  4MSJ A;  4MSM A;  4J6E A;  2RPZ A;  5CW6 A;  4OCM B;  1Z3A A;  2B3Z A;  2O3K A;  4O8Y A;  4OCN A;  4WIF A;  4HRQ A;  5C2O A;  1WWR A;  4MS7 A;  4LD4 A;  1OZ0 A;  4ZFR A;  2OG4 A;  1AF2 A;  2IU3 A;  2Z3H A;  1OI0 A;  1M9N A;  1R5T A;  2ZNV A;  2G84 A;  2KKS A;  3VX8 A;  3SBG A;  2Z3J A;  4EG2 A;  4MSQ A;  4JXE A;  4MSD A;  2HVW A;  4GGM X;  1PL0 A;  2O95 A;  4LCP A;  1OX7 A;  2HXV A;  4OCN B;  1P4R A;  1R5X A;  4K1R A;  4ZD5 A;  3BH1 A;  1YSB A;  2Z3G A;  3ZPG A;  3ZEF B;  3R2N A;  3G8Q A;  2Z3I A;  5M52 C;  3E1U A;  4HRW A;  1WN6 A;  1ZAB A;  4OWP B;  4I43 B;  1YSD A;  1UX1 A;  4ILG C;  4ZD4 A;  2O96 A;  2A8N A;  1UWZ A;  4ZFT A;  4D10 F;  4KIT C;  1ZCZ A; 
#chains in the Genus database with same CATH homology
 1MQ0 A;  4P9C A;  2ZNR A;  4QFT A;  3ZPC A;  1JTK A;  3DMO A;  3IJF X;  4BGD C;  4O8Y B;  4F3W A;  5M59 B;  1RB7 A;  4O8X A;  2NYT A;  4P9D A;  3B8F A;  4LD2 A;  3RZU A;  2PW9 A;  3MPZ A;  2D5N A;  2O7P A;  3DH1 A;  1TIY A;  4LC5 A;  1P6O A;  1WKQ A;  2G6V A;  3OJ6 A;  5GAO A;  2P87 A;  4OCL A;  4WIG A;  4PQT A;  1UAQ A;  2W4L A;  4E0Q A;  4LCO A;  4OCM A;  2OBC A;  2FR6 A;  4LCN A;  1CTU A;  2KCQ A;  1WN5 A;  2HVV A;  4F7O A;  4O8X B;  4P9E A;  2NX8 A;  2P8R A;  1CTT A;  4OWP A;  5DCA J;  2D30 A;  1UX0 A;  3RZV A;  2B3J A;  4G3M A;  4NQL A;  4OCL B;  2QLC A;  1ALN A;  2FR5 A;  3OCQ A;  1VQ2 A;  3EX8 A;  4MSJ A;  4MSM A;  2RPZ A;  5CW6 A;  4OCM B;  1Z3A A;  2B3Z A;  2O3K A;  4O8Y A;  4OCN A;  4WIF A;  4HRQ A;  5C2O A;  1WWR A;  4MS7 A;  4LD4 A;  4ZFR A;  2OG4 A;  1AF2 A;  2Z3H A;  1OI0 A;  1R5T A;  2ZNV A;  2G84 A;  2KKS A;  3SBG A;  2Z3J A;  4EG2 A;  4MSQ A;  4JXE A;  4MSD A;  2HVW A;  2O95 A;  4LCP A;  1OX7 A;  2HXV A;  4OCN B;  1R5X A;  4K1R A;  4ZD5 A;  1YSB A;  2Z3G A;  3ZPG A;  3ZEF B;  3R2N A;  3G8Q A;  2Z3I A;  5M52 C;  3E1U A;  4HRW A;  1WN6 A;  1ZAB A;  4OWP B;  4I43 B;  1YSD A;  1UX1 A;  4ILG C;  4ZD4 A;  2O96 A;  2A8N A;  1UWZ A;  4ZFT A;  4D10 F;  4KIT C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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