4FC5A

Crystal structure of ton_0340
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
259
structure length
259
Chain Sequence
b'GNRGVLKVYLDYRRKNFNFLHNSTKMFLDNLERVLIVTGFPIPPMMVAETDGPPGALAIYRAVEMLGGKAEILTYSEVEKALEPFGVSLARTPEPEDYSLIISVETPGRAADGRYYSMSALEIKRDPLDGIFLKARALGIPTIGVGDGGNEIGMGKIRELVVGHVPHGEKIASVVETDELIVSAVSNWGAYGLVAQASIEVGRNLLEGWDERRVIEAISSAGLIDGVSKTLAPSVDGIRLMVHEGIVELLKAVVDEAIK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein
publication title Experimental phasing using zinc anomalous scattering
pubmed doi rcsb
source organism Thermococcus onnurineus
molecule tags Unknown function
total genus 92
structure length 259
sequence length 259
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2012-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14336 DUF4392 Domain of unknown function (DUF4392)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1640.20 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4fc5A00
4FC5A 5GL2A 4DWZA 5GKXA 5GL4A 5GL3A
chains in the Genus database with same CATH superfamily
2ZXPA 2IW4A 1I74A 2QB6A 3DEVA 4DWZA 5GKXA 1WPMA 5GL4A 5GL3A 2QB8A 2ZXRA 1WPPA 4RPAA 2EB0A 1IR6A 2ZXOA 2ENXA 3W5WA 5GL2A 1K20A 2QB7A 1K23A 2HAWA 4LS9A 4PY9A 4FC5A 1WPNA
chains in the Genus database with same CATH topology
2ZXPA 2IW4A 1I74A 2QB6A 3DEVA 4DWZA 5GKXA 1WPMA 5GL4A 5GL3A 2QB8A 2ZXRA 1WPPA 4RPAA 2EB0A 1IR6A 2ZXOA 2ENXA 3W5WA 5GL2A 1K20A 2QB7A 1K23A 2HAWA 4LS9A 4PY9A 4FC5A 1WPNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FC5 A;  5GL2 A;  4DWZ A;  5GKX A;  5GL4 A;  5GL3 A; 
#chains in the Genus database with same CATH topology
 2ZXP A;  2IW4 A;  1I74 A;  2QB6 A;  3DEV A;  4DWZ A;  5GKX A;  1WPM A;  5GL4 A;  5GL3 A;  2QB8 A;  2ZXR A;  1WPP A;  4RPA A;  2EB0 A;  1IR6 A;  2ZXO A;  2ENX A;  3W5W A;  5GL2 A;  1K20 A;  2QB7 A;  1K23 A;  2HAW A;  4LS9 A;  4PY9 A;  4FC5 A;  1WPN A; 
#chains in the Genus database with same CATH homology
 2ZXP A;  2IW4 A;  1I74 A;  2QB6 A;  3DEV A;  4DWZ A;  5GKX A;  1WPM A;  5GL4 A;  5GL3 A;  2QB8 A;  2ZXR A;  1WPP A;  4RPA A;  2EB0 A;  1IR6 A;  2ZXO A;  2ENX A;  3W5W A;  5GL2 A;  1K20 A;  2QB7 A;  1K23 A;  2HAW A;  4LS9 A;  4PY9 A;  4FC5 A;  1WPN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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