The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
118
|
sequence length |
507
|
structure length |
443
|
Chain Sequence |
DREALWSKWDNASDSQRRLAEKWLPAVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITIDNTTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWLEEYVDKHPALAGAYTGPNPQAKPDNYGDRAVDAELFLKTLAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNLALMLAGVKKVVVRFDPQQLHSTVYCYTLDGRFICEAECLREYRRRQKQLKSATKAAIKAQKQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
The Mu transpososome structure sheds light on DDE recombinase evolution.
pubmed doi rcsb |
molecule keywords |
Transposase
|
source organism |
Enterobacteria phage mu
|
molecule tags |
Dna binding protein/dna
|
total genus |
118
|
structure length |
443
|
sequence length |
507
|
chains with identical sequence |
B
|
ec nomenclature | |
pdb deposition date | 2012-05-25 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF02914 | DDE_2 | Bacteriophage Mu transposase |
A | PF09039 | HTH_Tnp_Mu_2 | Mu DNA binding, I gamma subdomain |
A | PF09299 | Mu-transpos_C | Mu transposase, C-terminal |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | ||
Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | ||
Mainly Beta | Roll | SH3 type barrels. | Transposase, Mu, C-terminal | ||
Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase; domain 5 | Ribonuclease H-like superfamily/Ribonuclease H |