4FGIA

Structure of the effector - immunity system tse1 / tsi1 from pseudomonas aeruginosa
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
147
structure length
147
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Tse1
publication title Structural Insights into the Effector - Immunity System Tse1/Tsi1 from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 39
structure length 147
sequence length 147
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2012-06-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4fgiA00
3NE0A 4HZ9A 3PBIA 3NPFA 2HBWA 4Q4NA 3VPJA 4R0KA 4EQAA 3I86A 3S0QA 4FQBA 2VOBA 3A2YA 3A30A 2IOAA 4FDYA 4CGKA 4EOBA 2K1GA 4HPEA 2XIVA 2EVRA 4JXBA 3M1UA 4FGDA 4CT3A 3A2ZA 2FG0A 4F0WA 2IO9A 4EQ8A 2IO7A 4FGEA 3O98A 2IOBA 2VPSA 3PBCA 2VPMA 3VPIA 4Q4TA 4FQAA 4LJ1A 3KW0A 2LRJA 4FGIA 4HZBA 2IO8A 4CSHA 4OLKA 4Q4GX 3PVQA 3GT2A 2K3AA 4F0VA 4F4MA 3H41A 2IF6A
chains in the Genus database with same CATH superfamily
3NE0A 4HZ9A 3PBIA 3NPFA 2HBWA 4Q4NA 3VPJA 4R0KA 4EQAA 3I86A 3S0QA 4FQBA 4J32A 2VOBA 3A2YA 3EBQA 3A30A 2IOAA 4FDYA 4CGKA 4EOBA 2K1GA 4HPEA 2XIVA 2EVRA 4JXBA 3M1UA 4FGDA 4CT3A 3A2ZA 2FG0A 4F0WA 2IO9A 4EQ8A 2IO7A 2WP7A 4FGEA 4J30A 3O98A 2IOBA 2VPSA 3PBCA 2VPMA 3VPIA 4Q4TA 4FQAA 4HFKA 3KW0A 2LRJA 4FGIA 4JURA 4HZBA 4HFLA 4LJ1A 4OLKA 4Q4GX 3PVQA 3GT2A 2K3AA 2IO8A 4CSHA 4F0VA 4F4MA 3H41A 2IF6A 4HFFA
chains in the Genus database with same CATH topology
3NE0A 4HZ9A 3PBIA 3NPFA 2HBWA 4Q4NA 3VPJA 4R0KA 4EQAA 3I86A 3S0QA 4FQBA 2VOBA 3A2YA 3A30A 2IOAA 4FDYA 4CGKA 4EOBA 2K1GA 4HPEA 2XIVA 2EVRA 4JXBA 3M1UA 4FGDA 4CT3A 3A2ZA 2FG0A 4F0WA 2IO9A 4EQ8A 2IO7A 4FGEA 3O98A 2IOBA 2VPSA 3PBCA 2VPMA 3VPIA 4Q4TA 4FQAA 4LJ1A 3KW0A 2LRJA 4FGIA 4HZBA 2IO8A 4CSHA 4OLKA 4Q4GX 3PVQA 3GT2A 2K3AA 4F0VA 4F4MA 3H41A 2IF6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NE0 A;  4HZ9 A;  3PBI A;  3NPF A;  2HBW A;  4Q4N A;  3VPJ A;  4R0K A;  4EQA A;  3I86 A;  3S0Q A;  4FQB A;  2VOB A;  3A2Y A;  3A30 A;  2IOA A;  4FDY A;  4CGK A;  4EOB A;  2K1G A;  4HPE A;  2XIV A;  2EVR A;  4JXB A;  3M1U A;  4FGD A;  4CT3 A;  3A2Z A;  2FG0 A;  4F0W A;  2IO9 A;  4EQ8 A;  2IO7 A;  4FGE A;  3O98 A;  2IOB A;  2VPS A;  3PBC A;  2VPM A;  3VPI A;  4Q4T A;  4FQA A;  4LJ1 A;  3KW0 A;  2LRJ A;  4FGI A;  4HZB A;  2IO8 A;  4CSH A;  4OLK A;  4Q4G X;  3PVQ A;  3GT2 A;  2K3A A;  4F0V A;  4F4M A;  3H41 A;  2IF6 A; 
#chains in the Genus database with same CATH topology
 3NE0 A;  4HZ9 A;  3PBI A;  3NPF A;  2HBW A;  4Q4N A;  3VPJ A;  4R0K A;  4EQA A;  3I86 A;  3S0Q A;  4FQB A;  4J32 A;  2VOB A;  3A2Y A;  3EBQ A;  3A30 A;  2IOA A;  4FDY A;  4CGK A;  4EOB A;  2K1G A;  4HPE A;  2XIV A;  2EVR A;  4JXB A;  3M1U A;  4FGD A;  4CT3 A;  3A2Z A;  2FG0 A;  4F0W A;  2IO9 A;  4EQ8 A;  2IO7 A;  2WP7 A;  4FGE A;  4J30 A;  3O98 A;  2IOB A;  2VPS A;  3PBC A;  2VPM A;  3VPI A;  4Q4T A;  4FQA A;  4HFK A;  3KW0 A;  2LRJ A;  4FGI A;  4JUR A;  4HZB A;  4HFL A;  4LJ1 A;  4OLK A;  4Q4G X;  3PVQ A;  3GT2 A;  2K3A A;  2IO8 A;  4CSH A;  4F0V A;  4F4M A;  3H41 A;  2IF6 A;  4HFF A; 
#chains in the Genus database with same CATH homology
 3NE0 A;  4HZ9 A;  3PBI A;  3NPF A;  2HBW A;  4Q4N A;  3VPJ A;  4R0K A;  4EQA A;  3I86 A;  3S0Q A;  4FQB A;  2VOB A;  3A2Y A;  3A30 A;  2IOA A;  4FDY A;  4CGK A;  4EOB A;  2K1G A;  4HPE A;  2XIV A;  2EVR A;  4JXB A;  3M1U A;  4FGD A;  4CT3 A;  3A2Z A;  2FG0 A;  4F0W A;  2IO9 A;  4EQ8 A;  2IO7 A;  4FGE A;  3O98 A;  2IOB A;  2VPS A;  3PBC A;  2VPM A;  3VPI A;  4Q4T A;  4FQA A;  4LJ1 A;  3KW0 A;  2LRJ A;  4FGI A;  4HZB A;  2IO8 A;  4CSH A;  4OLK A;  4Q4G X;  3PVQ A;  3GT2 A;  2K3A A;  4F0V A;  4F4M A;  3H41 A;  2IF6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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