The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
182
|
sequence length |
587
|
structure length |
587
|
Chain Sequence |
MIAYDITPIDLHGHLFNVSLTIEQTNDEQELWLPNWIPGSYLIRDFSKHIIGLHAESNGLSLPVKQISKNRWQLARSKHPVTVHYQVYAWDLSVRSAYLDQFQGFFNNTSLCLAVEGQTDLPCELHLHAPPEAPLWKVATGMPRKSGQPHSWGCFRADNYDALIDYPFLIGDLTIEEFIAHGIKHSLVLSGRHYADTSRITADLAKICETQISLFEEAPFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDTLSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTSIGTADDTVINWLNQYPGIDISDFLKDALYNKESLSLVELLQNFGVMVQKQVPVDDNSVGGKASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQEPAKSSYVLSVEQPDKLKGWLTP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Crystal structure of the aminopeptidase N family protein Q5QTY1 from Idiomarina loihiensis.
rcsb |
molecule tags |
Hydrolase
|
source organism |
Idiomarina loihiensis l2tr
|
molecule keywords |
Aminopeptidase N family protein
|
total genus |
182
|
structure length |
587
|
sequence length |
587
|
ec nomenclature |
ec
3.4.11.2: Membrane alanyl aminopeptidase. |
pdb deposition date | 2012-06-04 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF05299 | Peptidase_M61 | M61 glycyl aminopeptidase |
A | PF13180 | PDZ_2 | PDZ domain |
A | PF17899 | Peptidase_M61_N | Peptidase M61 N-terminal domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Neutral Protease; domain 2 | Neutral Protease; domain 2 | ||
Mainly Beta | Roll | Pdz3 Domain | Pdz3 Domain | ||
Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulin-like |