The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
117
|
sequence length |
333
|
structure length |
333
|
Chain Sequence |
MDKLKIIMEKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQEIMDAVTIPVMAKCRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEKFAEPYLRLAFSVKEISGLPKRVLENEPIYEGFTYREIVEDIYKILLEIKKLGRLPVVNFAAGGVATPADAALMMAMGMDGVFVGSGIFKSSNPPKMARAIVEAVNHWDEPDVLAEISREIGEPMRGQAIEELQVRMEER
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of pyridoxal biosynthesis lyase PdxS from Pyrococcus horikoshii.
pubmed doi rcsb |
| molecule keywords |
Pyridoxal biosynthesis lyase pdxS
|
| molecule tags |
Lyase
|
| source organism |
Pyrococcus horikoshii
|
| total genus |
117
|
| structure length |
333
|
| sequence length |
333
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature |
ec
4.3.3.6: Pyridoxal 5'-phosphate synthase (glutamine hydrolyzing). |
| pdb deposition date | 2012-06-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01680 | SOR_SNZ | SOR/SNZ family |
| A | PF05690 | ThiG | Thiazole biosynthesis protein ThiG |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I |
