4FJCB

Structure of the saga ubp8/sgf11(1-72, delta-znf)/sus1/sgf73 dub module
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
92
structure length
92
Chain Sequence
TAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase 8
publication title A Role for Intersubunit Interactions in Maintaining SAGA Deubiquitinating Module Structure and Activity.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 34
structure length 92
sequence length 92
chains with identical sequence F
ec nomenclature
pdb deposition date 2012-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10163 EnY2 Transcription factor e(y)2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.140 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4fjcB00
4FIPB 3MHSB 3FWCC 3M99C 3FWBC 3MHHB 4ZUXV 4FK5B 4FJCB 4W4UB 4C31B 4DHXB 3KIKA 4WA6B 3KJLA 4MBEC
chains in the Genus database with same CATH superfamily
1FOUA 2EFDA 4GG2A 2XW0A 3JRYA 2DG5A 3VQIA 1TXUA 1KXPD 3WHRA 4FK5B 5IJEA 3B9LA 5B5TA 3NMUA 4MBEC 4K71A 5ID9A 1H5WA 3WHSA 1E7AA 1E7IA 2EFCA 2EFHA 2DBXA 4DHXB 3CX9A 3GA9L 2KBZA 1VFIA 3JQZA 3NVMA 2LOQA 4ZBQA 2BXLA 3GQXA 1KDXA 4Z9OA 4ZBRA 2NNWA 2XSIA 2XW1A 2E0XA 2OZBB 3LU6A 4LB2A 1TF0A 4F5SA 1HK5A 1J78A 1E7FA 4OT2A 2AGHB 3UIVA 4OR0A 2E0YA 5IIUA 2BXIA 2BXNA 2DBUA 5GIOA 1HA2A 4GDLB 4ZCGA 2LXSA 2LQIA 4TQ0A 4LB9A 3LU7A 5HOZA 3NVIA 2BXKA 1MIWA 4OTTA 2QMCA 3MHSB 4D7XA 2LQHA 4N3ZA 5IIXA 5IJ5A 1AO6A 2BXCA 3LU8A 4ZC6A 4M70B 2QM6A 3V09A 3W1SA 2BX8A 1O9XA 3SQJA 4HGMB 4Z69A 4K2CA 4ZUXV 1N5UA 1E7GA 1MUHA 2BXFA 3G9KD 1UORA 1LOTA 1HK2A 4WA6B 4N0UD 4E99A 4L8UA 1JNBA 4EMXA 4N0FD 4NAWB 4F5VA 3PLAA 2BXEA 2XVWA 5IIHA 3KIKA 4DM0A 1SB0A 1VZSA 1BKEA 2BXPA 3V08A 5GIPA 2EFEA 4LUHA 3WHQA 2BXBA 2K0NA 4C31B 3BPJA 1GNIA 5D7GA 3SIUB 4HGKA 1E7EA 3TDLA 2KWFA 3MHHB 4BKEA 2VUFA 4W4UB 2Z8JA 5DBYA 3SIVB 1NT2B 2BXAA 2V36A 2I2ZA 3FNMA 4IW2A 3NVKA 5FUOA 2CKXA 1MA9A 3B9MA 4G01A 2DBWA 5IFOA 2XMOA 2VUEA 4S1YA 1GNJA 1LNSA 4GDXA 2I30A 4FIPB 2BXHA 2BXDA 5GINA 1E7CA 5DQFA 4PO0A 2AJEA 1BM0A 2YDFA 2Z8IA 4G03A 1HK4A 2Z8KA 4ZBKA 4LA0A 1IJGA 3M99C 4GDKB 2BXOA 2BXGA 4JK4A 4I9OA 2LXTA 2BXMA 2ROHA 1BJ5A 1E7BA 2DYMA 4F5TA 4TQ1A 1H9ZA 3ICXA 1E78A 4G04A 4IW1A 2QHBA 2XVVA 1MIYA 3FWCC 4F5UA 2XVUA 4FJCB 4L9KA 1HK3A 4OTUA 1J7EA 5GHKA 2XVQA 4L9QA 5BPKA 5ID7A 3H3AA 2GUTA 2NQOA 3A75A 1KW2A 1MIVA 2BXQA 2DYOA 3ECPA 2OT3A 1HK1A 3FWBC 3GQUA 1E7HA 4J2VA 2JUHA 3A73A 3V03A 1MUSA 4LUFA 1MM8A 3H37A 3KJLA 2VDBA 4BY9C 5IJFA
chains in the Genus database with same CATH topology
1FOUA 2EFDA 4GG2A 2XW0A 3JRYA 2DG5A 3VQIA 1TXUA 1KXPD 3WHRA 4FK5B 5IJEA 3B9LA 5B5TA 3NMUA 4MBEC 4K71A 5ID9A 1H5WA 3WHSA 1E7AA 1E7IA 2EFCA 2EFHA 2DBXA 4DHXB 3CX9A 3GA9L 2KBZA 1VFIA 3JQZA 3NVMA 2LOQA 4ZBQA 2BXLA 3GQXA 4Z9OA 4ZBRA 2NNWA 2XSIA 2XW1A 2E0XA 2OZBB 3LU6A 4LB2A 1TF0A 4F5SA 1HK5A 1J78A 1E7FA 4OT2A 3UIVA 4OR0A 2E0YA 5IIUA 2BXIA 2BXNA 2DBUA 5GIOA 1HA2A 4GDLB 4ZCGA 4TQ0A 4LB9A 3LU7A 5HOZA 3NVIA 2BXKA 1MIWA 4OTTA 2QMCA 3MHSB 4N3ZA 5IIXA 5IJ5A 1AO6A 2BXCA 3LU8A 4ZC6A 4M70B 2QM6A 3V09A 3W1SA 2BX8A 1O9XA 3SQJA 4HGMB 4Z69A 4K2CA 4ZUXV 1N5UA 1E7GA 2BXFA 3G9KD 1UORA 1LOTA 1HK2A 4WA6B 4N0UD 4E99A 4L8UA 1JNBA 4EMXA 4N0FD 4NAWB 4F5VA 3PLAA 2BXEA 2XVWA 5IIHA 3KIKA 1VZSA 1BKEA 2BXPA 3V08A 5GIPA 2EFEA 4LUHA 3WHQA 2BXBA 4C31B 1GNIA 5D7GA 3SIUB 4HGKA 1E7EA 3TDLA 3MHHB 4BKEA 2VUFA 4W4UB 2Z8JA 5DBYA 3SIVB 1NT2B 2BXAA 2V36A 2I2ZA 3FNMA 4IW2A 3NVKA 5FUOA 2CKXA 1MA9A 3B9MA 4G01A 2DBWA 5IFOA 2XMOA 2VUEA 4S1YA 1GNJA 1LNSA 4GDXA 2I30A 4FIPB 2BXHA 2BXDA 5GINA 1E7CA 5DQFA 4PO0A 2AJEA 1BM0A 2YDFA 2Z8IA 4G03A 1HK4A 2Z8KA 4ZBKA 4LA0A 1IJGA 3M99C 4GDKB 2BXOA 2BXGA 4JK4A 2BXMA 2ROHA 1BJ5A 1E7BA 2DYMA 4F5TA 4TQ1A 1H9ZA 3ICXA 1E78A 4G04A 4IW1A 2QHBA 2XVVA 1MIYA 3FWCC 4F5UA 2XVUA 4FJCB 4L9KA 1HK3A 4OTUA 1J7EA 5GHKA 2XVQA 4L9QA 5BPKA 5ID7A 3H3AA 2NQOA 3A75A 1KW2A 1MIVA 2BXQA 2DYOA 2OT3A 1HK1A 3FWBC 3GQUA 1E7HA 4J2VA 2JUHA 3A73A 3V03A 4LUFA 3H37A 3KJLA 2VDBA 4BY9C 5IJFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FIP B;  3MHS B;  3FWC C;  3M99 C;  3FWB C;  3MHH B;  4ZUX V;  4FK5 B;  4FJC B;  4W4U B;  4C31 B;  4DHX B;  3KIK A;  4WA6 B;  3KJL A;  4MBE C; 
#chains in the Genus database with same CATH topology
 1FOU A;  2EFD A;  4GG2 A;  2XW0 A;  3JRY A;  2DG5 A;  3VQI A;  1TXU A;  1KXP D;  3WHR A;  4FK5 B;  5IJE A;  3B9L A;  5B5T A;  3NMU A;  4MBE C;  4K71 A;  5ID9 A;  1H5W A;  3WHS A;  1E7A A;  1E7I A;  2EFC A;  2EFH A;  2DBX A;  4DHX B;  3CX9 A;  3GA9 L;  2KBZ A;  1VFI A;  3JQZ A;  3NVM A;  2LOQ A;  4ZBQ A;  2BXL A;  3GQX A;  1KDX A;  4Z9O A;  4ZBR A;  2NNW A;  2XSI A;  2XW1 A;  2E0X A;  2OZB B;  3LU6 A;  4LB2 A;  1TF0 A;  4F5S A;  1HK5 A;  1J78 A;  1E7F A;  4OT2 A;  2AGH B;  3UIV A;  4OR0 A;  2E0Y A;  5IIU A;  2BXI A;  2BXN A;  2DBU A;  5GIO A;  1HA2 A;  4GDL B;  4ZCG A;  2LXS A;  2LQI A;  4TQ0 A;  4LB9 A;  3LU7 A;  5HOZ A;  3NVI A;  2BXK A;  1MIW A;  4OTT A;  2QMC A;  3MHS B;  4D7X A;  2LQH A;  4N3Z A;  5IIX A;  5IJ5 A;  1AO6 A;  2BXC A;  3LU8 A;  4ZC6 A;  4M70 B;  2QM6 A;  3V09 A;  3W1S A;  2BX8 A;  1O9X A;  3SQJ A;  4HGM B;  4Z69 A;  4K2C A;  4ZUX V;  1N5U A;  1E7G A;  1MUH A;  2BXF A;  3G9K D;  1UOR A;  1LOT A;  1HK2 A;  4WA6 B;  4N0U D;  4E99 A;  4L8U A;  1JNB A;  4EMX A;  4N0F D;  4NAW B;  4F5V A;  3PLA A;  2BXE A;  2XVW A;  5IIH A;  3KIK A;  4DM0 A;  1SB0 A;  1VZS A;  1BKE A;  2BXP A;  3V08 A;  5GIP A;  2EFE A;  4LUH A;  3WHQ A;  2BXB A;  2K0N A;  4C31 B;  3BPJ A;  1GNI A;  5D7G A;  3SIU B;  4HGK A;  1E7E A;  3TDL A;  2KWF A;  3MHH B;  4BKE A;  2VUF A;  4W4U B;  2Z8J A;  5DBY A;  3SIV B;  1NT2 B;  2BXA A;  2V36 A;  2I2Z A;  3FNM A;  4IW2 A;  3NVK A;  5FUO A;  2CKX A;  1MA9 A;  3B9M A;  4G01 A;  2DBW A;  5IFO A;  2XMO A;  2VUE A;  4S1Y A;  1GNJ A;  1LNS A;  4GDX A;  2I30 A;  4FIP B;  2BXH A;  2BXD A;  5GIN A;  1E7C A;  5DQF A;  4PO0 A;  2AJE A;  1BM0 A;  2YDF A;  2Z8I A;  4G03 A;  1HK4 A;  2Z8K A;  4ZBK A;  4LA0 A;  1IJG A;  3M99 C;  4GDK B;  2BXO A;  2BXG A;  4JK4 A;  4I9O A;  2LXT A;  2BXM A;  2ROH A;  1BJ5 A;  1E7B A;  2DYM A;  4F5T A;  4TQ1 A;  1H9Z A;  3ICX A;  1E78 A;  4G04 A;  4IW1 A;  2QHB A;  2XVV A;  1MIY A;  3FWC C;  4F5U A;  2XVU A;  4FJC B;  4L9K A;  1HK3 A;  4OTU A;  1J7E A;  5GHK A;  2XVQ A;  4L9Q A;  5BPK A;  5ID7 A;  3H3A A;  2GUT A;  2NQO A;  3A75 A;  1KW2 A;  1MIV A;  2BXQ A;  2DYO A;  3ECP A;  2OT3 A;  1HK1 A;  3FWB C;  3GQU A;  1E7H A;  4J2V A;  2JUH A;  3A73 A;  3V03 A;  1MUS A;  4LUF A;  1MM8 A;  3H37 A;  3KJL A;  2VDB A;  4BY9 C;  5IJF A; 
#chains in the Genus database with same CATH homology
 1FOU A;  2EFD A;  4GG2 A;  2XW0 A;  3JRY A;  2DG5 A;  3VQI A;  1TXU A;  1KXP D;  3WHR A;  4FK5 B;  5IJE A;  3B9L A;  5B5T A;  3NMU A;  4MBE C;  4K71 A;  5ID9 A;  1H5W A;  3WHS A;  1E7A A;  1E7I A;  2EFC A;  2EFH A;  2DBX A;  4DHX B;  3CX9 A;  3GA9 L;  2KBZ A;  1VFI A;  3JQZ A;  3NVM A;  2LOQ A;  4ZBQ A;  2BXL A;  3GQX A;  4Z9O A;  4ZBR A;  2NNW A;  2XSI A;  2XW1 A;  2E0X A;  2OZB B;  3LU6 A;  4LB2 A;  1TF0 A;  4F5S A;  1HK5 A;  1J78 A;  1E7F A;  4OT2 A;  3UIV A;  4OR0 A;  2E0Y A;  5IIU A;  2BXI A;  2BXN A;  2DBU A;  5GIO A;  1HA2 A;  4GDL B;  4ZCG A;  4TQ0 A;  4LB9 A;  3LU7 A;  5HOZ A;  3NVI A;  2BXK A;  1MIW A;  4OTT A;  2QMC A;  3MHS B;  4N3Z A;  5IIX A;  5IJ5 A;  1AO6 A;  2BXC A;  3LU8 A;  4ZC6 A;  4M70 B;  2QM6 A;  3V09 A;  3W1S A;  2BX8 A;  1O9X A;  3SQJ A;  4HGM B;  4Z69 A;  4K2C A;  4ZUX V;  1N5U A;  1E7G A;  2BXF A;  3G9K D;  1UOR A;  1LOT A;  1HK2 A;  4WA6 B;  4N0U D;  4E99 A;  4L8U A;  1JNB A;  4EMX A;  4N0F D;  4NAW B;  4F5V A;  3PLA A;  2BXE A;  2XVW A;  5IIH A;  3KIK A;  1VZS A;  1BKE A;  2BXP A;  3V08 A;  5GIP A;  2EFE A;  4LUH A;  3WHQ A;  2BXB A;  4C31 B;  1GNI A;  5D7G A;  3SIU B;  4HGK A;  1E7E A;  3TDL A;  3MHH B;  4BKE A;  2VUF A;  4W4U B;  2Z8J A;  5DBY A;  3SIV B;  1NT2 B;  2BXA A;  2V36 A;  2I2Z A;  3FNM A;  4IW2 A;  3NVK A;  5FUO A;  2CKX A;  1MA9 A;  3B9M A;  4G01 A;  2DBW A;  5IFO A;  2XMO A;  2VUE A;  4S1Y A;  1GNJ A;  1LNS A;  4GDX A;  2I30 A;  4FIP B;  2BXH A;  2BXD A;  5GIN A;  1E7C A;  5DQF A;  4PO0 A;  2AJE A;  1BM0 A;  2YDF A;  2Z8I A;  4G03 A;  1HK4 A;  2Z8K A;  4ZBK A;  4LA0 A;  1IJG A;  3M99 C;  4GDK B;  2BXO A;  2BXG A;  4JK4 A;  2BXM A;  2ROH A;  1BJ5 A;  1E7B A;  2DYM A;  4F5T A;  4TQ1 A;  1H9Z A;  3ICX A;  1E78 A;  4G04 A;  4IW1 A;  2QHB A;  2XVV A;  1MIY A;  3FWC C;  4F5U A;  2XVU A;  4FJC B;  4L9K A;  1HK3 A;  4OTU A;  1J7E A;  5GHK A;  2XVQ A;  4L9Q A;  5BPK A;  5ID7 A;  3H3A A;  2NQO A;  3A75 A;  1KW2 A;  1MIV A;  2BXQ A;  2DYO A;  2OT3 A;  1HK1 A;  3FWB C;  3GQU A;  1E7H A;  4J2V A;  2JUH A;  3A73 A;  3V03 A;  4LUF A;  3H37 A;  3KJL A;  2VDB A;  4BY9 C;  5IJF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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