4FJOC

Structure of the rev1 ctd-rev3/7-pol kappa rir complex
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
210
structure length
210
Chain Sequence
MTTLTRQDLNFGQVVADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLLSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/dna binding protein
molecule keywords DNA repair protein REV1
publication title Structural basis of Rev1-mediated assembly of a quaternary vertebrate translesion polymerase complex consisting of Rev1, heterodimeric Pol zeta and Pol kappa
pubmed doi rcsb
source organism Mus musculus
total genus 53
structure length 210
sequence length 210
ec nomenclature
pdb deposition date 2012-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02301 HORMA HORMA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.900.10 Alpha Beta 2-Layer Sandwich Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A HORMA domain 4fjoC00
3ABDA 2VFXA 4TZNA 3ABEC 1KLQA 2QYFA 4GK0A 4TZQA 1DUJA 4TZMA 4J2GA 4EXTC 2V64D 5C50B 4TZJA 4GK5A 2V64A 4YK8B 5LCWZ 4TZSA 4FJOC 1GO4A 4TRKA 4AEZB 3VU7C 1S2HA 3GMHA 4TZOA 4TZLA
chains in the Genus database with same CATH superfamily
3ABDA 2VFXA 4TZNA 3ABEC 1KLQA 2QYFA 4GK0A 4TZQA 1DUJA 4TZMA 4J2GA 4EXTC 2V64D 2QYFB 5C50B 4TZJA 4GK5A 2V64A 4YK8B 5LCWZ 4TZSA 4FJOC 1GO4A 4TRKA 4AEZB 3VU7C 1S2HA 3GMHA 4TZOA 4TZLA
chains in the Genus database with same CATH topology
3ABDA 2VFXA 4TZNA 3ABEC 1KLQA 2QYFA 4GK0A 4TZQA 1DUJA 4TZMA 4J2GA 4EXTC 2V64D 5C50B 4TZJA 4GK5A 2V64A 4YK8B 5LCWZ 4TZSA 4FJOC 1GO4A 4TRKA 4AEZB 3VU7C 1S2HA 3GMHA 4TZOA 4TZLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ABD A;  2VFX A;  4TZN A;  3ABE C;  1KLQ A;  2QYF A;  4GK0 A;  4TZQ A;  1DUJ A;  4TZM A;  4J2G A;  4EXT C;  2V64 D;  5C50 B;  4TZJ A;  4GK5 A;  2V64 A;  4YK8 B;  5LCW Z;  4TZS A;  4FJO C;  1GO4 A;  4TRK A;  4AEZ B;  3VU7 C;  1S2H A;  3GMH A;  4TZO A;  4TZL A; 
#chains in the Genus database with same CATH topology
 3ABD A;  2VFX A;  4TZN A;  3ABE C;  1KLQ A;  2QYF A;  4GK0 A;  4TZQ A;  1DUJ A;  4TZM A;  4J2G A;  4EXT C;  2V64 D;  2QYF B;  5C50 B;  4TZJ A;  4GK5 A;  2V64 A;  4YK8 B;  5LCW Z;  4TZS A;  4FJO C;  1GO4 A;  4TRK A;  4AEZ B;  3VU7 C;  1S2H A;  3GMH A;  4TZO A;  4TZL A; 
#chains in the Genus database with same CATH homology
 3ABD A;  2VFX A;  4TZN A;  3ABE C;  1KLQ A;  2QYF A;  4GK0 A;  4TZQ A;  1DUJ A;  4TZM A;  4J2G A;  4EXT C;  2V64 D;  5C50 B;  4TZJ A;  4GK5 A;  2V64 A;  4YK8 B;  5LCW Z;  4TZS A;  4FJO C;  1GO4 A;  4TRK A;  4AEZ B;  3VU7 C;  1S2H A;  3GMH A;  4TZO A;  4TZL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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