4FK5B

Structure of the saga ubp8(s144n)/sgf11/sus1/sgf73 dub module
Total Genus 34
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
92
structure length
92
Chain Sequence
TAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIVDTQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase 8
publication title A Role for Intersubunit Interactions in Maintaining SAGA Deubiquitinating Module Structure and Activity.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 34
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2012-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF10163 EnY2 Transcription factor e(y)2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.140 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4fk5B00
4ZUXV 4FIPB 4MBEC 3KIKA 3M99C 3KJLA 3MHHB 4FJCB 3FWBC 4W4UB 3MHSB 4C31B 4FK5B 4DHXB 3FWCC 4WA6B
chains in the Genus database with same CATH superfamily
2KWFA 5DBYA 2DYMA 3WHSA 4M70B 3NMUA 4TQ0A 4G01A 2BXPA 2VUEA 4TQ1A 4GG2A 3W1SA 2BXFA 1MUHA 1MUSA 3SIVB 2BXDA 2LXSA 1E7IA 2VUFA 4WA6B 3V08A 5IIUA 1JNBA 2XVVA 1HK4A 3G9KD 4HGMB 5FUOA 1BJ5A 5IJ5A 4EMXA 4C31B 4LB9A 1SB0A 4IW1A 4L9QA 2AJEA 2DBUA 1E7AA 1HK3A 5IIHA 3NVMA 1MIYA 4LUHA 4HGKA 2LOQA 3FWBC 4NAWB 5HOZA 5IJFA 1FOUA 1E7GA 2XVUA 2KBZA 5GIOA 1HK1A 3B9LA 4MBEC 3JRYA 1GNJA 1LOTA 2BXHA 2XW0A 2OZBB 1VFIA 1MA9A 1N5UA 1E7CA 2LQHA 2DYOA 2BX8A 1MIVA 3A73A 4LUFA 4DHXB 4F5TA 2QM6A 1H9ZA 5B5TA 4PO0A 5IFOA 3UIVA 3H3AA 2V36A 4G04A 4FK5B 5IIXA 2NQOA 3WHRA 2EFCA 4LA0A 4OR0A 4D7XA 5BPKA 2I2ZA 4GDLB 4F5VA 3ECPA 4GDXA 3KJLA 3LU7A 4N3ZA 2ROHA 3SIUB 1H5WA 1E78A 1O9XA 1MIWA 3A75A 4OT2A 2XSIA 2XVWA 4LB2A 3FNMA 1IJGA 2EFDA 4F5SA 5IJEA 1UORA 2XW1A 3H37A 3PLAA 2EFEA 1VZSA 3GA9L 1BKEA 1TXUA 5GHKA 2BXBA 2LQIA 1HK2A 2EFHA 2BXAA 4N0FD 2BXCA 5DQFA 4ZCGA 2Z8IA 2DBXA 2QMCA 2BXNA 4G03A 3VQIA 3M99C 4FJCB 4L9KA 2I30A 3MHSB 1J7EA 2VDBA 5GINA 4Z69A 4GDKB 2BXIA 4FIPB 3TDLA 2BXGA 3SQJA 3NVIA 3BPJA 3JQZA 3KIKA 4W4UB 1KDXA 1KXPD 3NVKA 4K2CA 2DBWA 4BKEA 4ZBRA 1BM0A 2GUTA 2LXTA 2BXQA 4IW2A 1HA2A 2NNWA 3CX9A 4N0UD 4ZBKA 1E7HA 2BXKA 4K71A 2OT3A 3V03A 4E99A 3V09A 1NT2B 1AO6A 1MM8A 4ZC6A 2QHBA 3ICXA 3WHQA 4F5UA 2Z8JA 4L8UA 4ZBQA 2BXOA 1KW2A 2BXEA 4OTTA 5D7GA 2BXLA 4S1YA 3LU6A 2XMOA 1J78A 2Z8KA 3B9MA 2BXMA 2E0YA 1GNIA 2K0NA 1E7EA 4Z9OA 4DM0A 3MHHB 2JUHA 1E7FA 4I9OA 2AGHB 1TF0A 2XVQA 2DG5A 3GQUA 3LU8A 2E0XA 2YDFA 1HK5A 4OTUA 1E7BA 5ID7A 4JK4A 5ID9A 2CKXA 4BY9C 4ZUXV 1LNSA 3GQXA 4J2VA 3FWCC 5GIPA
chains in the Genus database with same CATH topology
5DBYA 2DYMA 3WHSA 4M70B 3NMUA 4TQ0A 4G01A 2BXPA 2VUEA 4TQ1A 4GG2A 3W1SA 2BXFA 3SIVB 2BXDA 1E7IA 2VUFA 4WA6B 3V08A 5IIUA 1JNBA 2XVVA 1HK4A 3G9KD 4HGMB 5FUOA 1BJ5A 5IJ5A 4EMXA 4C31B 4LB9A 4IW1A 4L9QA 2AJEA 2DBUA 1E7AA 1HK3A 5IIHA 3NVMA 1MIYA 4LUHA 4HGKA 2LOQA 3FWBC 4NAWB 5HOZA 5IJFA 1FOUA 1E7GA 2XVUA 2KBZA 5GIOA 1HK1A 3B9LA 4MBEC 3JRYA 1GNJA 1LOTA 2BXHA 2XW0A 2OZBB 1VFIA 1MA9A 1N5UA 1E7CA 4LUFA 2DYOA 2BX8A 1MIVA 3A73A 4DHXB 4F5TA 2QM6A 1H9ZA 5B5TA 4PO0A 5IFOA 3UIVA 3H3AA 2V36A 4G04A 4FK5B 5IIXA 2NQOA 3WHRA 2EFCA 4LA0A 4OR0A 5BPKA 2I2ZA 4GDLB 4F5VA 4GDXA 3KJLA 3LU7A 4N3ZA 2ROHA 3SIUB 1H5WA 1E78A 1O9XA 1MIWA 3A75A 4OT2A 2XSIA 2XVWA 4LB2A 3FNMA 1IJGA 2EFDA 4F5SA 5IJEA 1UORA 2XW1A 3H37A 3PLAA 2EFEA 1VZSA 3GA9L 1BKEA 1TXUA 5GHKA 2BXBA 1HK2A 2EFHA 2BXAA 4N0FD 2BXCA 5DQFA 4ZCGA 2Z8IA 2DBXA 2QMCA 2BXNA 4G03A 3VQIA 3M99C 4FJCB 4L9KA 2I30A 3MHSB 1J7EA 2VDBA 5GINA 4Z69A 4GDKB 2BXIA 4FIPB 3TDLA 2BXGA 3SQJA 3NVIA 3JQZA 3KIKA 4W4UB 1KXPD 3NVKA 4K2CA 2DBWA 4BKEA 4ZBRA 1BM0A 2BXQA 4IW2A 1HA2A 2NNWA 3CX9A 4N0UD 4ZBKA 1E7HA 2BXKA 4K71A 2OT3A 3V03A 4E99A 3V09A 1NT2B 1AO6A 4ZC6A 2QHBA 3ICXA 3WHQA 4F5UA 2Z8JA 4L8UA 4ZBQA 2BXOA 1KW2A 2BXEA 4OTTA 5D7GA 2BXLA 4S1YA 3LU6A 2XMOA 1J78A 2Z8KA 3B9MA 2BXMA 2E0YA 1GNIA 4Z9OA 1E7EA 3MHHB 2JUHA 1E7FA 2XVQA 1TF0A 3LU8A 2DG5A 3GQUA 2E0XA 2YDFA 1HK5A 4OTUA 1E7BA 5ID7A 4JK4A 5ID9A 2CKXA 4BY9C 4ZUXV 1LNSA 3GQXA 4J2VA 3FWCC 5GIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZUX V;  4FIP B;  4MBE C;  3KIK A;  3M99 C;  3KJL A;  3MHH B;  4FJC B;  3FWB C;  4W4U B;  3MHS B;  4C31 B;  4FK5 B;  4DHX B;  3FWC C;  4WA6 B; 
#chains in the Genus database with same CATH topology
 2KWF A;  5DBY A;  2DYM A;  3WHS A;  4M70 B;  3NMU A;  4TQ0 A;  4G01 A;  2BXP A;  2VUE A;  4TQ1 A;  4GG2 A;  3W1S A;  2BXF A;  1MUH A;  1MUS A;  3SIV B;  2BXD A;  2LXS A;  1E7I A;  2VUF A;  4WA6 B;  3V08 A;  5IIU A;  1JNB A;  2XVV A;  1HK4 A;  3G9K D;  4HGM B;  5FUO A;  1BJ5 A;  5IJ5 A;  4EMX A;  4C31 B;  4LB9 A;  1SB0 A;  4IW1 A;  4L9Q A;  2AJE A;  2DBU A;  1E7A A;  1HK3 A;  5IIH A;  3NVM A;  1MIY A;  4LUH A;  4HGK A;  2LOQ A;  3FWB C;  4NAW B;  5HOZ A;  5IJF A;  1FOU A;  1E7G A;  2XVU A;  2KBZ A;  5GIO A;  1HK1 A;  3B9L A;  4MBE C;  3JRY A;  1GNJ A;  1LOT A;  2BXH A;  2XW0 A;  2OZB B;  1VFI A;  1MA9 A;  1N5U A;  1E7C A;  2LQH A;  2DYO A;  2BX8 A;  1MIV A;  3A73 A;  4LUF A;  4DHX B;  4F5T A;  2QM6 A;  1H9Z A;  5B5T A;  4PO0 A;  5IFO A;  3UIV A;  3H3A A;  2V36 A;  4G04 A;  4FK5 B;  5IIX A;  2NQO A;  3WHR A;  2EFC A;  4LA0 A;  4OR0 A;  4D7X A;  5BPK A;  2I2Z A;  4GDL B;  4F5V A;  3ECP A;  4GDX A;  3KJL A;  3LU7 A;  4N3Z A;  2ROH A;  3SIU B;  1H5W A;  1E78 A;  1O9X A;  1MIW A;  3A75 A;  4OT2 A;  2XSI A;  2XVW A;  4LB2 A;  3FNM A;  1IJG A;  2EFD A;  4F5S A;  5IJE A;  1UOR A;  2XW1 A;  3H37 A;  3PLA A;  2EFE A;  1VZS A;  3GA9 L;  1BKE A;  1TXU A;  5GHK A;  2BXB A;  2LQI A;  1HK2 A;  2EFH A;  2BXA A;  4N0F D;  2BXC A;  5DQF A;  4ZCG A;  2Z8I A;  2DBX A;  2QMC A;  2BXN A;  4G03 A;  3VQI A;  3M99 C;  4FJC B;  4L9K A;  2I30 A;  3MHS B;  1J7E A;  2VDB A;  5GIN A;  4Z69 A;  4GDK B;  2BXI A;  4FIP B;  3TDL A;  2BXG A;  3SQJ A;  3NVI A;  3BPJ A;  3JQZ A;  3KIK A;  4W4U B;  1KDX A;  1KXP D;  3NVK A;  4K2C A;  2DBW A;  4BKE A;  4ZBR A;  1BM0 A;  2GUT A;  2LXT A;  2BXQ A;  4IW2 A;  1HA2 A;  2NNW A;  3CX9 A;  4N0U D;  4ZBK A;  1E7H A;  2BXK A;  4K71 A;  2OT3 A;  3V03 A;  4E99 A;  3V09 A;  1NT2 B;  1AO6 A;  1MM8 A;  4ZC6 A;  2QHB A;  3ICX A;  3WHQ A;  4F5U A;  2Z8J A;  4L8U A;  4ZBQ A;  2BXO A;  1KW2 A;  2BXE A;  4OTT A;  5D7G A;  2BXL A;  4S1Y A;  3LU6 A;  2XMO A;  1J78 A;  2Z8K A;  3B9M A;  2BXM A;  2E0Y A;  1GNI A;  2K0N A;  1E7E A;  4Z9O A;  4DM0 A;  3MHH B;  2JUH A;  1E7F A;  4I9O A;  2AGH B;  1TF0 A;  2XVQ A;  2DG5 A;  3GQU A;  3LU8 A;  2E0X A;  2YDF A;  1HK5 A;  4OTU A;  1E7B A;  5ID7 A;  4JK4 A;  5ID9 A;  2CKX A;  4BY9 C;  4ZUX V;  1LNS A;  3GQX A;  4J2V A;  3FWC C;  5GIP A; 
#chains in the Genus database with same CATH homology
 5DBY A;  2DYM A;  3WHS A;  4M70 B;  3NMU A;  4TQ0 A;  4G01 A;  2BXP A;  2VUE A;  4TQ1 A;  4GG2 A;  3W1S A;  2BXF A;  3SIV B;  2BXD A;  1E7I A;  2VUF A;  4WA6 B;  3V08 A;  5IIU A;  1JNB A;  2XVV A;  1HK4 A;  3G9K D;  4HGM B;  5FUO A;  1BJ5 A;  5IJ5 A;  4EMX A;  4C31 B;  4LB9 A;  4IW1 A;  4L9Q A;  2AJE A;  2DBU A;  1E7A A;  1HK3 A;  5IIH A;  3NVM A;  1MIY A;  4LUH A;  4HGK A;  2LOQ A;  3FWB C;  4NAW B;  5HOZ A;  5IJF A;  1FOU A;  1E7G A;  2XVU A;  2KBZ A;  5GIO A;  1HK1 A;  3B9L A;  4MBE C;  3JRY A;  1GNJ A;  1LOT A;  2BXH A;  2XW0 A;  2OZB B;  1VFI A;  1MA9 A;  1N5U A;  1E7C A;  4LUF A;  2DYO A;  2BX8 A;  1MIV A;  3A73 A;  4DHX B;  4F5T A;  2QM6 A;  1H9Z A;  5B5T A;  4PO0 A;  5IFO A;  3UIV A;  3H3A A;  2V36 A;  4G04 A;  4FK5 B;  5IIX A;  2NQO A;  3WHR A;  2EFC A;  4LA0 A;  4OR0 A;  5BPK A;  2I2Z A;  4GDL B;  4F5V A;  4GDX A;  3KJL A;  3LU7 A;  4N3Z A;  2ROH A;  3SIU B;  1H5W A;  1E78 A;  1O9X A;  1MIW A;  3A75 A;  4OT2 A;  2XSI A;  2XVW A;  4LB2 A;  3FNM A;  1IJG A;  2EFD A;  4F5S A;  5IJE A;  1UOR A;  2XW1 A;  3H37 A;  3PLA A;  2EFE A;  1VZS A;  3GA9 L;  1BKE A;  1TXU A;  5GHK A;  2BXB A;  1HK2 A;  2EFH A;  2BXA A;  4N0F D;  2BXC A;  5DQF A;  4ZCG A;  2Z8I A;  2DBX A;  2QMC A;  2BXN A;  4G03 A;  3VQI A;  3M99 C;  4FJC B;  4L9K A;  2I30 A;  3MHS B;  1J7E A;  2VDB A;  5GIN A;  4Z69 A;  4GDK B;  2BXI A;  4FIP B;  3TDL A;  2BXG A;  3SQJ A;  3NVI A;  3JQZ A;  3KIK A;  4W4U B;  1KXP D;  3NVK A;  4K2C A;  2DBW A;  4BKE A;  4ZBR A;  1BM0 A;  2BXQ A;  4IW2 A;  1HA2 A;  2NNW A;  3CX9 A;  4N0U D;  4ZBK A;  1E7H A;  2BXK A;  4K71 A;  2OT3 A;  3V03 A;  4E99 A;  3V09 A;  1NT2 B;  1AO6 A;  4ZC6 A;  2QHB A;  3ICX A;  3WHQ A;  4F5U A;  2Z8J A;  4L8U A;  4ZBQ A;  2BXO A;  1KW2 A;  2BXE A;  4OTT A;  5D7G A;  2BXL A;  4S1Y A;  3LU6 A;  2XMO A;  1J78 A;  2Z8K A;  3B9M A;  2BXM A;  2E0Y A;  1GNI A;  4Z9O A;  1E7E A;  3MHH B;  2JUH A;  1E7F A;  2XVQ A;  1TF0 A;  3LU8 A;  2DG5 A;  3GQU A;  2E0X A;  2YDF A;  1HK5 A;  4OTU A;  1E7B A;  5ID7 A;  4JK4 A;  5ID9 A;  2CKX A;  4BY9 C;  4ZUX V;  1LNS A;  3GQX A;  4J2V A;  3FWC C;  5GIP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...