4FL4A

Scaffoldin conformation and dynamics revealed by a ternary complex from the clostridium thermocellum cellulosome
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
68
structure length
68
Chain Sequence
HMGDVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVNSSDVTILSRYLIRVIEKLPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Glycoside hydrolase family 9
publication title Scaffoldin Conformation and Dynamics Revealed by a Ternary Complex from the Clostridium thermocellum Cellulosome.
pubmed doi rcsb
source organism Clostridium thermocellum
total genus 22
structure length 68
sequence length 68
chains with identical sequence D, G, J
ec nomenclature ec 3.2.1.4: Cellulase.
pdb deposition date 2012-06-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1330.10 Mainly Alpha Orthogonal Bundle Type 1 dockerin domain Dockerin domain 4fl4A00
3UL4B 5G5DB 5LXVB 4DH2B 4FL4C 4FL4A 2OZNB 1DAVA 1OHZB 2CCLB 1DAQA 4IU3B 3KCPA 4IU2B 4UYPB 4UYQB 2VN5B 2B59B 4U3SB 4WI0B 5K39B 2Y3NB 4WKZA 2JNKA 2MTEA 2VN6B
chains in the Genus database with same CATH superfamily
3UL4B 5G5DB 5LXVB 4DH2B 4FL4C 4FL4A 2OZNB 1DAVA 1OHZB 2CCLB 1DAQA 4IU3B 3KCPA 4IU2B 4UYPB 4UYQB 2VN5B 2B59B 4U3SB 4WI0B 5K39B 2Y3NB 4WKZA 2JNKA 2MTEA 2VN6B
chains in the Genus database with same CATH topology
3UL4B 5G5DB 5LXVB 4DH2B 4FL4C 4FL4A 2OZNB 1DAVA 1OHZB 2CCLB 1DAQA 4IU3B 3KCPA 4IU2B 4UYPB 4UYQB 2VN5B 2B59B 4U3SB 4WI0B 5K39B 2Y3NB 4WKZA 2JNKA 2MTEA 2VN6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UL4 B;  5G5D B;  5LXV B;  4DH2 B;  4FL4 C;  4FL4 A;  2OZN B;  1DAV A;  1OHZ B;  2CCL B;  1DAQ A;  4IU3 B;  3KCP A;  4IU2 B;  4UYP B;  4UYQ B;  2VN5 B;  2B59 B;  4U3S B;  4WI0 B;  5K39 B;  2Y3N B;  4WKZ A;  2JNK A;  2MTE A;  2VN6 B; 
#chains in the Genus database with same CATH topology
 3UL4 B;  5G5D B;  5LXV B;  4DH2 B;  4FL4 C;  4FL4 A;  2OZN B;  1DAV A;  1OHZ B;  2CCL B;  1DAQ A;  4IU3 B;  3KCP A;  4IU2 B;  4UYP B;  4UYQ B;  2VN5 B;  2B59 B;  4U3S B;  4WI0 B;  5K39 B;  2Y3N B;  4WKZ A;  2JNK A;  2MTE A;  2VN6 B; 
#chains in the Genus database with same CATH homology
 3UL4 B;  5G5D B;  5LXV B;  4DH2 B;  4FL4 C;  4FL4 A;  2OZN B;  1DAV A;  1OHZ B;  2CCL B;  1DAQ A;  4IU3 B;  3KCP A;  4IU2 B;  4UYP B;  4UYQ B;  2VN5 B;  2B59 B;  4U3S B;  4WI0 B;  5K39 B;  2Y3N B;  4WKZ A;  2JNK A;  2MTE A;  2VN6 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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