4FMSA

Crystal structure of pseudomonas aeruginosa occk2 (opdf) in complex with glucuronate
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
397
structure length
369
Chain Sequence
GHVHAGQGFLEDAKASLTARNFHLHRNFVGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWRFDENRLIVSYPLSLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Probable porin
publication title Toward Understanding the Outer Membrane Uptake of Small Molecules by Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 99
structure length 369
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fmsA01
2PORA 3HWBA 3SZDA 4LSIA 4FMSA 4BUMX 1HXTA 3UU2A 3T20A 3SY9A 4KRAA 4C69X 3POXA 4RJXA 3VZTX 1GFQA 2ODJA 2ZFGA 2PRNA 1GFPA 4D65A 3SYBA 5DL5A 2FGRA 2Y0LA 3T24A 4JFBA 4FSOA 4FRXA 1GFNA 4KR4A 5JDPA 3PORA 3NSGA 2J4UP 3O0EA 2XE3A 4D5UA 4LSEA 3SZVA 1MPFA 1E54A 4RJWA 3A2SX 5DL6A 2FGQX 4GCPA 2Y0KA 4FRTA 2Y0HA 1H6S1 3POUA 3VY8X 4FT6A 4GCQA 3VY9X 1HXUA 3EMNX 1OPFA 4FOZA 3K19A 3WI4A 1BH3A 1GFOA 5FVNA 2K4TA 2XG6A 2XE2A 2J1NA 4LSFA 1HXXA 4FSPA 4AUIA 6PRNA 4GCSA 1BT9A 5DL8A 3HW9A 4KR8A 5DL7A 1PRNA 2XE5A 2OMFA 3UPGA 7PRNA 2Y2XA 3VZWX 1PHOA 1OSMA 3T0SA 3PRNA 2O4VA 3WI5A 2QTKA 3SYSA 3FYXA 3POQA 3JTYA 2ZLDA 4D64A 3SY7A 1GFMA 3VZUX 4LSHA 2XE1A 8PRNA 5PRNA
chains in the Genus database with same CATH superfamily
2PORA 3HWBA 3SZDA 2N2LA 5AFUK 4N58A 3AA7A 5IYUA 4LSIA 4XNLA 4FMSA 2M06A 4BUMX 3UU2A 3T20A 3SY9A 4AKRB 1Q9FA 2XE1A 4KRAA 4PJ0O 3AAAB 5E79O 2GE4A 4FUVA 4UB8O 2IWVA 2JQYA 3HOEA 3PGRA 4PR7A 5KAFO 2R4NA 4XNKA 4GF4A 3AA7B 3DA3A 4C69X 4GHBA 5GTHO 1S5LO 3POXA 1THQA 3BRZA 3PGUA 2R4LA 1G90A 2R8AA 2R88A 2K0LA 5G39A 4RJXA 3HOLA 3TZGA 4AYID 4AYNA 3VZTX 3PQUA 4AZLA 4B61A 1GFQA 2ODJA 2PRNA 2ZFGA 4N75A 4O3ZA 2WJQA 5G26A 1ZHYA 1BXWA 1GFPA 2AXTO 3SYBA 4D65A 5DL5A 5B66O 2FGRA 4K3BA 4G75A 2Y0LA 3T24A 2KXPA 2R4PA 3AA1A 2XTQA 5ADXK 5GV0A 5EE2A 3AA0A 4AFKA 2LHFA 4O3XB 1ZHZA 2W80C 5B5EO 4JFBA 3VE1A 4FSOA 4FRXA 3RBHA 5H2FO 3WU2O 1GFNA 4KR4A 5JDPA 2F1TA 3PGSA 3PORA 4QQ1A 2KC0A 1T1LA 2IWWA 3LK42 1YS5A 2MNHA 4FQEA 3NSGA 4O3YA 2J4UP 3KZIO 3O0EA 3A0HO 2F1CX 2JMMA 4F4BA 2XE3A 2KXPB 3V8UA 4D5UA 3AA0B 1ZHWA 4E1SA 3LK3A 4LSEA 3SZVA 4FZMA 5T5FA 3C5OA 1MPFA 4RJWA 3DZMA 3DWOX 4CTDA 3A2SX 5D5DA 2XTRA 4C00A 5DL6A 2FGQX 4GCPA 4AKMA 4PUXA 2R4OA 1MM5A 2Y0KA 4N59A 4FRTA 2ERVA 2Y0HA 1H6S1 3POUA 3VY8X 3JCUO 4FT6A 4FZNA 3LK3B 2XMXA 4G76A 5KAIO 1T16A 2F1VA 3VE2A 4GCQA 3VY9X 1HXUA 5AFUL 2X27X 3BRYA 3EMNX 2N2MA 2X9KA 2R89A 1OPFA 3UAQA 4AYDC 1MM4A 4FOZA 4C4VB 4E1TA 2MHLA 3K19A 3PF1A 4Z3TA 1Q9GA 4U9CA 3WI4A 5GTIO 1BH3A 1GFOA 4O4UA 3AA1B 5FVNA 3A0BO 2K4TA 2XG6A 3BS0A 3QRAA 4K3CA 4IL6O 3AAEA 2Y7SA 2XE2A 2J1NA 4FESA 2KZ7A 1HXXA 3LK41 4LSFA 3AA6A 3G7GA 1ZHXA 4FSPA 4AUIA 4RLCA 6PRNA 4GCSA 1BT9A 4AYEC 4O49A 1ORMA 5DL8A 2WJRA 3HW9A 4KR8A 5TISO 4C4VA 1IZNA 1QJPA 5DL7A 1PRNA 2XE5A 2OMFA 3LK2A 3DA4A 3AAEB 4RL9A 3UPGA 1QJ8A 1QJ9A 1ZHTA 2KZ7B 4O3WA 5ADXL 3AA6B 7PRNA 2M07A 4O4XA 4FZLA 4RLBA 2Y2XA 4AYMC 5G38A 3VZWX 3KVDD 3DWNA 3GP6A 1PHOA 3NJTA 1OSMA 3T0SA 3QRCA 1P4TA 2O4VA 1IZNB 3PRNA 4LSHA 2QTKA 3SYSA 3WI5A 2YNKA 3FYXA 3LK2B 3POQA 4AKRA 3JTYA 2ZLDA 4UB6O 4N74A 3SY7A 4D64A 1GFMA 2LFUA 2YPVA 3PQSA 2KDYA 2WVPA 2W81C 3AAAA 4JCHA 1HXTA 5G3AA 3VZUX 1E54A 8PRNA 5PRNA
chains in the Genus database with same CATH topology
2PORA 3HWBA 3SZDA 2N2LA 5AFUK 4N58A 3AA7A 5IYUA 4LSIA 4XNLA 4FMSA 2M06A 4BUMX 3UU2A 3T20A 3SY9A 4AKRB 1Q9FA 4KRAA 3AAAB 2GE4A 4FUVA 3HOEA 4XNKA 4GF4A 3AA7B 3DA3A 4C69X 4GHBA 3POXA 1THQA 1G90A 2K0LA 4RJXA 3HOLA 3TZGA 4AYID 4AYNA 3VZTX 3PQUA 4AZLA 4B61A 1GFQA 2ODJA 2PRNA 2ZFGA 4O3ZA 5G26A 1ZHYA 1BXWA 1GFPA 4D65A 3SYBA 5DL5A 2FGRA 4G75A 2Y0LA 3T24A 2KXPA 3AA1A 5ADXK 2XTQA 5GV0A 5EE2A 3AA0A 4AFKA 2LHFA 4O3XB 1ZHZA 2W80C 4JFBA 3VE1A 4FSOA 4FRXA 3RBHA 1GFNA 4KR4A 5JDPA 2F1TA 3PORA 4QQ1A 2KC0A 3LK42 1YS5A 2MNHA 3NSGA 4O3YA 2J4UP 3O0EA 4F4BA 2JMMA 2XE3A 2KXPB 3V8UA 4D5UA 3AA0B 1ZHWA 4E1SA 3LK3A 4LSEA 3SZVA 4FZMA 5T5FA 3C5OA 1MPFA 1E54A 4RJWA 3A2SX 5D5DA 2XTRA 5DL6A 2FGQX 4GCPA 4AKMA 4PUXA 1MM5A 2Y0KA 4N59A 4FRTA 2ERVA 2Y0HA 1H6S1 3POUA 3VY8X 4FT6A 4FZNA 3LK3B 2XMXA 4G76A 2F1VA 3VE2A 4GCQA 3VY9X 1HXUA 5AFUL 2X27X 3EMNX 2N2MA 3UAQA 1OPFA 4E1TA 4AYDC 1MM4A 4FOZA 2MHLA 3K19A 4Z3TA 1Q9GA 4U9CA 3WI4A 1BH3A 1GFOA 4O4UA 3AA1B 5FVNA 2K4TA 2XG6A 3QRAA 3AAEA 2Y7SA 2XE2A 2J1NA 4FESA 2KZ7A 1HXXA 3LK41 4LSFA 3AA6A 3G7GA 1ZHXA 4FSPA 4AUIA 4RLCA 6PRNA 4GCSA 1BT9A 4AYEC 4O49A 1ORMA 5DL8A 3HW9A 4KR8A 1IZNA 1QJPA 5DL7A 1PRNA 2XE5A 2OMFA 3LK2A 3DA4A 3AAEB 4RL9A 3UPGA 1QJ8A 1QJ9A 1ZHTA 2KZ7B 4O3WA 5ADXL 3AA6B 7PRNA 2M07A 4O4XA 4FZLA 4RLBA 2Y2XA 4AYMC 3VZWX 3KVDD 3GP6A 1PHOA 1OSMA 3T0SA 3QRCA 1P4TA 2O4VA 1IZNB 3PRNA 4LSHA 2QTKA 3SYSA 3WI5A 2YNKA 3FYXA 3LK2B 3POQA 4AKRA 3JTYA 2ZLDA 4D64A 3SY7A 1GFMA 2LFUA 2YPVA 3PQSA 2KDYA 4JCHA 2W81C 3AAAA 3VZUX 1HXTA 2XE1A 8PRNA 5PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2POR A;  3HWB A;  3SZD A;  4LSI A;  4FMS A;  4BUM X;  1HXT A;  3UU2 A;  3T20 A;  3SY9 A;  4KRA A;  4C69 X;  3POX A;  4RJX A;  3VZT X;  1GFQ A;  2ODJ A;  2ZFG A;  2PRN A;  1GFP A;  4D65 A;  3SYB A;  5DL5 A;  2FGR A;  2Y0L A;  3T24 A;  4JFB A;  4FSO A;  4FRX A;  1GFN A;  4KR4 A;  5JDP A;  3POR A;  3NSG A;  2J4U P;  3O0E A;  2XE3 A;  4D5U A;  4LSE A;  3SZV A;  1MPF A;  1E54 A;  4RJW A;  3A2S X;  5DL6 A;  2FGQ X;  4GCP A;  2Y0K A;  4FRT A;  2Y0H A;  1H6S 1;  3POU A;  3VY8 X;  4FT6 A;  4GCQ A;  3VY9 X;  1HXU A;  3EMN X;  1OPF A;  4FOZ A;  3K19 A;  3WI4 A;  1BH3 A;  1GFO A;  5FVN A;  2K4T A;  2XG6 A;  2XE2 A;  2J1N A;  4LSF A;  1HXX A;  4FSP A;  4AUI A;  6PRN A;  4GCS A;  1BT9 A;  5DL8 A;  3HW9 A;  4KR8 A;  5DL7 A;  1PRN A;  2XE5 A;  2OMF A;  3UPG A;  7PRN A;  2Y2X A;  3VZW X;  1PHO A;  1OSM A;  3T0S A;  3PRN A;  2O4V A;  3WI5 A;  2QTK A;  3SYS A;  3FYX A;  3POQ A;  3JTY A;  2ZLD A;  4D64 A;  3SY7 A;  1GFM A;  3VZU X;  4LSH A;  2XE1 A;  8PRN A;  5PRN A; 
#chains in the Genus database with same CATH topology
 2POR A;  3HWB A;  3SZD A;  2N2L A;  5AFU K;  4N58 A;  3AA7 A;  5IYU A;  4LSI A;  4XNL A;  4FMS A;  2M06 A;  4BUM X;  3UU2 A;  3T20 A;  3SY9 A;  4AKR B;  1Q9F A;  2XE1 A;  4KRA A;  4PJ0 O;  3AAA B;  5E79 O;  2GE4 A;  4FUV A;  4UB8 O;  2IWV A;  2JQY A;  3HOE A;  3PGR A;  4PR7 A;  5KAF O;  2R4N A;  4XNK A;  4GF4 A;  3AA7 B;  3DA3 A;  4C69 X;  4GHB A;  5GTH O;  1S5L O;  3POX A;  1THQ A;  3BRZ A;  3PGU A;  2R4L A;  1G90 A;  2R8A A;  2R88 A;  2K0L A;  5G39 A;  4RJX A;  3HOL A;  3TZG A;  4AYI D;  4AYN A;  3VZT X;  3PQU A;  4AZL A;  4B61 A;  1GFQ A;  2ODJ A;  2PRN A;  2ZFG A;  4N75 A;  4O3Z A;  2WJQ A;  5G26 A;  1ZHY A;  1BXW A;  1GFP A;  2AXT O;  3SYB A;  4D65 A;  5DL5 A;  5B66 O;  2FGR A;  4K3B A;  4G75 A;  2Y0L A;  3T24 A;  2KXP A;  2R4P A;  3AA1 A;  2XTQ A;  5ADX K;  5GV0 A;  5EE2 A;  3AA0 A;  4AFK A;  2LHF A;  4O3X B;  1ZHZ A;  2W80 C;  5B5E O;  4JFB A;  3VE1 A;  4FSO A;  4FRX A;  3RBH A;  5H2F O;  3WU2 O;  1GFN A;  4KR4 A;  5JDP A;  2F1T A;  3PGS A;  3POR A;  4QQ1 A;  2KC0 A;  1T1L A;  2IWW A;  3LK4 2;  1YS5 A;  2MNH A;  4FQE A;  3NSG A;  4O3Y A;  2J4U P;  3KZI O;  3O0E A;  3A0H O;  2F1C X;  2JMM A;  4F4B A;  2XE3 A;  2KXP B;  3V8U A;  4D5U A;  3AA0 B;  1ZHW A;  4E1S A;  3LK3 A;  4LSE A;  3SZV A;  4FZM A;  5T5F A;  3C5O A;  1MPF A;  4RJW A;  3DZM A;  3DWO X;  4CTD A;  3A2S X;  5D5D A;  2XTR A;  4C00 A;  5DL6 A;  2FGQ X;  4GCP A;  4AKM A;  4PUX A;  2R4O A;  1MM5 A;  2Y0K A;  4N59 A;  4FRT A;  2ERV A;  2Y0H A;  1H6S 1;  3POU A;  3VY8 X;  3JCU O;  4FT6 A;  4FZN A;  3LK3 B;  2XMX A;  4G76 A;  5KAI O;  1T16 A;  2F1V A;  3VE2 A;  4GCQ A;  3VY9 X;  1HXU A;  5AFU L;  2X27 X;  3BRY A;  3EMN X;  2N2M A;  2X9K A;  2R89 A;  1OPF A;  3UAQ A;  4AYD C;  1MM4 A;  4FOZ A;  4C4V B;  4E1T A;  2MHL A;  3K19 A;  3PF1 A;  4Z3T A;  1Q9G A;  4U9C A;  3WI4 A;  5GTI O;  1BH3 A;  1GFO A;  4O4U A;  3AA1 B;  5FVN A;  3A0B O;  2K4T A;  2XG6 A;  3BS0 A;  3QRA A;  4K3C A;  4IL6 O;  3AAE A;  2Y7S A;  2XE2 A;  2J1N A;  4FES A;  2KZ7 A;  1HXX A;  3LK4 1;  4LSF A;  3AA6 A;  3G7G A;  1ZHX A;  4FSP A;  4AUI A;  4RLC A;  6PRN A;  4GCS A;  1BT9 A;  4AYE C;  4O49 A;  1ORM A;  5DL8 A;  2WJR A;  3HW9 A;  4KR8 A;  5TIS O;  4C4V A;  1IZN A;  1QJP A;  5DL7 A;  1PRN A;  2XE5 A;  2OMF A;  3LK2 A;  3DA4 A;  3AAE B;  4RL9 A;  3UPG A;  1QJ8 A;  1QJ9 A;  1ZHT A;  2KZ7 B;  4O3W A;  5ADX L;  3AA6 B;  7PRN A;  2M07 A;  4O4X A;  4FZL A;  4RLB A;  2Y2X A;  4AYM C;  5G38 A;  3VZW X;  3KVD D;  3DWN A;  3GP6 A;  1PHO A;  3NJT A;  1OSM A;  3T0S A;  3QRC A;  1P4T A;  2O4V A;  1IZN B;  3PRN A;  4LSH A;  2QTK A;  3SYS A;  3WI5 A;  2YNK A;  3FYX A;  3LK2 B;  3POQ A;  4AKR A;  3JTY A;  2ZLD A;  4UB6 O;  4N74 A;  3SY7 A;  4D64 A;  1GFM A;  2LFU A;  2YPV A;  3PQS A;  2KDY A;  2WVP A;  2W81 C;  3AAA A;  4JCH A;  1HXT A;  5G3A A;  3VZU X;  1E54 A;  8PRN A;  5PRN A; 
#chains in the Genus database with same CATH homology
 2POR A;  3HWB A;  3SZD A;  2N2L A;  5AFU K;  4N58 A;  3AA7 A;  5IYU A;  4LSI A;  4XNL A;  4FMS A;  2M06 A;  4BUM X;  3UU2 A;  3T20 A;  3SY9 A;  4AKR B;  1Q9F A;  4KRA A;  3AAA B;  2GE4 A;  4FUV A;  3HOE A;  4XNK A;  4GF4 A;  3AA7 B;  3DA3 A;  4C69 X;  4GHB A;  3POX A;  1THQ A;  1G90 A;  2K0L A;  4RJX A;  3HOL A;  3TZG A;  4AYI D;  4AYN A;  3VZT X;  3PQU A;  4AZL A;  4B61 A;  1GFQ A;  2ODJ A;  2PRN A;  2ZFG A;  4O3Z A;  5G26 A;  1ZHY A;  1BXW A;  1GFP A;  4D65 A;  3SYB A;  5DL5 A;  2FGR A;  4G75 A;  2Y0L A;  3T24 A;  2KXP A;  3AA1 A;  5ADX K;  2XTQ A;  5GV0 A;  5EE2 A;  3AA0 A;  4AFK A;  2LHF A;  4O3X B;  1ZHZ A;  2W80 C;  4JFB A;  3VE1 A;  4FSO A;  4FRX A;  3RBH A;  1GFN A;  4KR4 A;  5JDP A;  2F1T A;  3POR A;  4QQ1 A;  2KC0 A;  3LK4 2;  1YS5 A;  2MNH A;  3NSG A;  4O3Y A;  2J4U P;  3O0E A;  4F4B A;  2JMM A;  2XE3 A;  2KXP B;  3V8U A;  4D5U A;  3AA0 B;  1ZHW A;  4E1S A;  3LK3 A;  4LSE A;  3SZV A;  4FZM A;  5T5F A;  3C5O A;  1MPF A;  1E54 A;  4RJW A;  3A2S X;  5D5D A;  2XTR A;  5DL6 A;  2FGQ X;  4GCP A;  4AKM A;  4PUX A;  1MM5 A;  2Y0K A;  4N59 A;  4FRT A;  2ERV A;  2Y0H A;  1H6S 1;  3POU A;  3VY8 X;  4FT6 A;  4FZN A;  3LK3 B;  2XMX A;  4G76 A;  2F1V A;  3VE2 A;  4GCQ A;  3VY9 X;  1HXU A;  5AFU L;  2X27 X;  3EMN X;  2N2M A;  3UAQ A;  1OPF A;  4E1T A;  4AYD C;  1MM4 A;  4FOZ A;  2MHL A;  3K19 A;  4Z3T A;  1Q9G A;  4U9C A;  3WI4 A;  1BH3 A;  1GFO A;  4O4U A;  3AA1 B;  5FVN A;  2K4T A;  2XG6 A;  3QRA A;  3AAE A;  2Y7S A;  2XE2 A;  2J1N A;  4FES A;  2KZ7 A;  1HXX A;  3LK4 1;  4LSF A;  3AA6 A;  3G7G A;  1ZHX A;  4FSP A;  4AUI A;  4RLC A;  6PRN A;  4GCS A;  1BT9 A;  4AYE C;  4O49 A;  1ORM A;  5DL8 A;  3HW9 A;  4KR8 A;  1IZN A;  1QJP A;  5DL7 A;  1PRN A;  2XE5 A;  2OMF A;  3LK2 A;  3DA4 A;  3AAE B;  4RL9 A;  3UPG A;  1QJ8 A;  1QJ9 A;  1ZHT A;  2KZ7 B;  4O3W A;  5ADX L;  3AA6 B;  7PRN A;  2M07 A;  4O4X A;  4FZL A;  4RLB A;  2Y2X A;  4AYM C;  3VZW X;  3KVD D;  3GP6 A;  1PHO A;  1OSM A;  3T0S A;  3QRC A;  1P4T A;  2O4V A;  1IZN B;  3PRN A;  4LSH A;  2QTK A;  3SYS A;  3WI5 A;  2YNK A;  3FYX A;  3LK2 B;  3POQ A;  4AKR A;  3JTY A;  2ZLD A;  4D64 A;  3SY7 A;  1GFM A;  2LFU A;  2YPV A;  3PQS A;  2KDY A;  4JCH A;  2W81 C;  3AAA A;  3VZU X;  1HXT A;  2XE1 A;  8PRN A;  5PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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