4FMSA

Crystal structure of pseudomonas aeruginosa occk2 (opdf) in complex with glucuronate
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
397
structure length
369
Chain Sequence
GHVHAGQGFLEDAKASLTARNFHLHRNFVGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWRFDENRLIVSYPLSLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable porin
publication title Toward Understanding the Outer Membrane Uptake of Small Molecules by Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 99
structure length 369
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fmsA01
1GFOA 1PRNA 1H6S1 3VY8X 4GCSA 1OPFA 2Y0LA 5DL5A 1GFNA 3WI5A 2ZFGA 5DL7A 3T24A 2J4UP 4RJXA 3UPGA 4KR4A 3VZUX 2QTKA 1GFPA 3O0EA 4GCPA 4BUMX 2J1NA 4D64A 4C69X 1HXTA 4FSPA 2Y0HA 3SZVA 4FSOA 2Y2XA 4RJWA 4LSHA 2PORA 5FVNA 2ODJA 2K4TA 4FMSA 3PORA 1HXUA 2XE1A 3PRNA 4FRTA 3EMNX 4JFBA 2XE5A 1HXXA 3T20A 4GCQA 3VY9X 7PRNA 1E54A 1OSMA 1PHOA 3VZWX 2PRNA 3HWBA 3POUA 1GFQA 2XE2A 5PRNA 3POXA 5DL8A 4FT6A 3A2SX 3POQA 1BT9A 3UU2A 2ZLDA 4KR8A 4AUIA 1GFMA 3SYSA 3SZDA 4LSFA 4D65A 4KRAA 4D5UA 4FOZA 3FYXA 2FGQX 3JTYA 3SYBA 3K19A 1MPFA 4FRXA 3T0SA 4LSIA 3SY7A 5DL6A 6PRNA 2XE3A 2O4VA 2FGRA 2OMFA 3HW9A 3SY9A 1BH3A 3WI4A 3NSGA 8PRNA 3VZTX 5JDPA 2Y0KA 4LSEA 2XG6A
chains in the Genus database with same CATH superfamily
1GFOA 1PRNA 4FZMA 5KAIO 1H6S1 2X9KA 1Q9FA 3AA0A 3QRCA 4QQ1A 1QJ9A 3VY8X 4GCSA 4RL9A 4O49A 1OPFA 2X27X 2Y0LA 2R89A 5DL5A 3PQUA 3LK3A 1GFNA 2N2MA 3DWNA 3WI5A 2ZFGA 3G7GA 3JCUO 5DL7A 3T24A 5GTHO 2J4UP 4RJXA 3AA6B 2KZ7A 3BRZA 4G76A 4PR7A 2GE4A 4RLCA 4XNLA 4KR4A 3VZUX 3UPGA 2QTKA 1GFPA 3LK42 2XTRA 2LHFA 3O0EA 5E79O 3DWOX 2XMXA 4Z3TA 4GCPA 2R4NA 3VE1A 5G3AA 5GV0A 4XNKA 4BUMX 2J1NA 4D64A 4C69X 1ZHXA 1HXTA 3LK3B 4GF4A 4FSPA 4O4UA 4E1TA 2Y0HA 2K0LA 2KZ7B 3LK2A 4CTDA 3A0BO 3SZVA 4FSOA 2Y2XA 3DZMA 5G39A 5B66O 5EE2A 1Q9GA 3AAAA 4O3WA 4U9CA 4RJWA 5TISO 3KZIO 3KVDD 4LSHA 1QJPA 2PORA 5FVNA 2IWVA 2ODJA 2JQYA 2K4TA 3C5OA 3VE2A 2YPVA 1MM4A 3A0HO 3DA4A 4FMSA 2ERVA 3PORA 1HXUA 2R8AA 2XE1A 2LFUA 3LK2B 3PRNA 4AKRA 2YNKA 5GTIO 4FRTA 2R4OA 4AYDC 3EMNX 4JFBA 4G75A 2XE5A 1THQA 1HXXA 3PGRA 3T20A 3AAAB 4K3BA 1ORMA 3PGSA 4C4VB 2R4PA 4GCQA 4FZNA 4N74A 4AYMC 3VY9X 4C00A 4AYNA 1G90A 4O3XB 5G26A 3DA3A 1ZHZA 4AKRB 7PRNA 5KAFO 1E54A 1OSMA 1PHOA 4PJ0O 2PRNA 3VZWX 2F1TA 3HWBA 3TZGA 3POUA 1GFQA 2XE2A 4AKMA 3AAEA 4N59A 2XTQA 4FUVA 5PRNA 2R4LA 3AA1A 3PGUA 4C4VA 3LK41 3POXA 4PUXA 1T1LA 1IZNB 5DL8A 3RBHA 4JCHA 2R88A 3PQSA 4FT6A 3BS0A 4RLBA 4AFKA 4FESA 5B5EO 2WJQA 2WJRA 2WVPA 3AAEB 3A2SX 3POQA 3PF1A 1BT9A 3UU2A 2Y7SA 2ZLDA 4N75A 4KR8A 5AFUK 3AA1B 4AUIA 1GFMA 3SYSA 2JMMA 4GHBA 4UB6O 3HOEA 3SZDA 4LSFA 4D65A 4FQEA 1IZNA 2F1CX 1ZHWA 3AA7A 2N2LA 3GP6A 2W80C 4O3ZA 2KDYA 3BRYA 4KRAA 4E1SA 2KC0A 5D5DA 5G38A 4D5UA 5AFUL 1BXWA 4FOZA 2M07A 4O3YA 3FYXA 4AZLA 2FGQX 3JTYA 2KXPB 4O4XA 3SYBA 3QRAA 1S5LO 3K19A 5ADXK 2W81C 4B61A 1MPFA 1ZHYA 4UB8O 4FRXA 4N58A 3HOLA 3AA7B 4FZLA 5T5FA 3T0SA 1QJ8A 2M06A 1P4TA 4LSIA 4K3CA 5DL6A 3SY7A 1ZHTA 2IWWA 6PRNA 1YS5A 4F4BA 2XE3A 2O4VA 2AXTO 3AA0B 2F1VA 5H2FO 4AYEC 5IYUA 2MHLA 5ADXL 2FGRA 2OMFA 3HW9A 2MNHA 3SY9A 3WU2O 1BH3A 2KXPA 3WI4A 3NSGA 3V8UA 8PRNA 3VZTX 4IL6O 1MM5A 3AA6A 4AYID 3NJTA 2Y0KA 5JDPA 4LSEA 1T16A 2XG6A 3UAQA
chains in the Genus database with same CATH topology
1GFOA 1PRNA 4FZMA 1H6S1 3AA0A 1Q9FA 3QRCA 4QQ1A 3VY8X 1QJ9A 4GCSA 4RL9A 4O49A 1OPFA 2X27X 2Y0LA 5DL5A 3PQUA 3LK3A 1GFNA 2N2MA 3WI5A 2ZFGA 3G7GA 5DL7A 3T24A 2J4UP 4RJXA 3AA6B 2KZ7A 4G76A 4RLCA 2GE4A 4XNLA 3UPGA 4KR4A 3VZUX 2QTKA 1GFPA 3LK42 2XTRA 2LHFA 3O0EA 2XMXA 4Z3TA 4GCPA 3VE1A 5GV0A 4XNKA 4BUMX 2J1NA 4D64A 4C69X 1ZHXA 1HXTA 3LK3B 4GF4A 4FSPA 4O4UA 4E1TA 2Y0HA 2K0LA 2KZ7B 3LK2A 3SZVA 4FSOA 2Y2XA 5EE2A 1Q9GA 3AAAA 4O3WA 4U9CA 4RJWA 4LSHA 3KVDD 1QJPA 2PORA 5FVNA 3VE2A 2ODJA 3C5OA 2K4TA 2YPVA 1MM4A 3DA4A 4FMSA 2ERVA 3PORA 1HXUA 2XE1A 3PRNA 2LFUA 3LK2B 4AKRA 2YNKA 4FRTA 4AYDC 3EMNX 4JFBA 4G75A 2XE5A 1THQA 1HXXA 3T20A 3AAAB 1ORMA 4GCQA 4FZNA 4AYMC 3VY9X 4AYNA 1G90A 4O3XB 5G26A 3DA3A 1ZHZA 4AKRB 7PRNA 1E54A 1OSMA 1PHOA 3VZWX 2PRNA 2F1TA 3HWBA 3TZGA 3POUA 1GFQA 2XE2A 4AKMA 3AAEA 4N59A 2XTQA 4FUVA 5PRNA 3AA1A 3LK41 3POXA 4PUXA 5DL8A 1IZNB 3RBHA 4JCHA 4FT6A 3PQSA 4RLBA 4AFKA 4FESA 3AAEB 3A2SX 3POQA 1BT9A 3UU2A 2Y7SA 2ZLDA 5AFUK 4KR8A 3AA1B 4AUIA 1GFMA 3SYSA 2JMMA 4GHBA 3HOEA 3SZDA 4LSFA 4D65A 1IZNA 1ZHWA 3AA7A 2N2LA 3GP6A 2W80C 4O3ZA 2KDYA 4KRAA 4E1SA 2KC0A 5D5DA 4D5UA 5AFUL 1BXWA 4FOZA 2M07A 4O3YA 3FYXA 4AZLA 2FGQX 3JTYA 2KXPB 4O4XA 3SYBA 3QRAA 3K19A 5ADXK 2W81C 4B61A 1MPFA 1ZHYA 4FRXA 4N58A 3HOLA 3AA7B 4FZLA 5T5FA 3T0SA 1QJ8A 2M06A 1P4TA 4LSIA 3SY7A 5DL6A 1ZHTA 6PRNA 1YS5A 4F4BA 2XE3A 2O4VA 3AA0B 2F1VA 5IYUA 4AYEC 2MHLA 5ADXL 2FGRA 2OMFA 3HW9A 2MNHA 3SY9A 1BH3A 2KXPA 3WI4A 3NSGA 3V8UA 8PRNA 3VZTX 1MM5A 3AA6A 4AYID 5JDPA 2Y0KA 4LSEA 2XG6A 3UAQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GFO A;  1PRN A;  1H6S 1;  3VY8 X;  4GCS A;  1OPF A;  2Y0L A;  5DL5 A;  1GFN A;  3WI5 A;  2ZFG A;  5DL7 A;  3T24 A;  2J4U P;  4RJX A;  3UPG A;  4KR4 A;  3VZU X;  2QTK A;  1GFP A;  3O0E A;  4GCP A;  4BUM X;  2J1N A;  4D64 A;  4C69 X;  1HXT A;  4FSP A;  2Y0H A;  3SZV A;  4FSO A;  2Y2X A;  4RJW A;  4LSH A;  2POR A;  5FVN A;  2ODJ A;  2K4T A;  4FMS A;  3POR A;  1HXU A;  2XE1 A;  3PRN A;  4FRT A;  3EMN X;  4JFB A;  2XE5 A;  1HXX A;  3T20 A;  4GCQ A;  3VY9 X;  7PRN A;  1E54 A;  1OSM A;  1PHO A;  3VZW X;  2PRN A;  3HWB A;  3POU A;  1GFQ A;  2XE2 A;  5PRN A;  3POX A;  5DL8 A;  4FT6 A;  3A2S X;  3POQ A;  1BT9 A;  3UU2 A;  2ZLD A;  4KR8 A;  4AUI A;  1GFM A;  3SYS A;  3SZD A;  4LSF A;  4D65 A;  4KRA A;  4D5U A;  4FOZ A;  3FYX A;  2FGQ X;  3JTY A;  3SYB A;  3K19 A;  1MPF A;  4FRX A;  3T0S A;  4LSI A;  3SY7 A;  5DL6 A;  6PRN A;  2XE3 A;  2O4V A;  2FGR A;  2OMF A;  3HW9 A;  3SY9 A;  1BH3 A;  3WI4 A;  3NSG A;  8PRN A;  3VZT X;  5JDP A;  2Y0K A;  4LSE A;  2XG6 A; 
#chains in the Genus database with same CATH topology
 1GFO A;  1PRN A;  4FZM A;  5KAI O;  1H6S 1;  2X9K A;  1Q9F A;  3AA0 A;  3QRC A;  4QQ1 A;  1QJ9 A;  3VY8 X;  4GCS A;  4RL9 A;  4O49 A;  1OPF A;  2X27 X;  2Y0L A;  2R89 A;  5DL5 A;  3PQU A;  3LK3 A;  1GFN A;  2N2M A;  3DWN A;  3WI5 A;  2ZFG A;  3G7G A;  3JCU O;  5DL7 A;  3T24 A;  5GTH O;  2J4U P;  4RJX A;  3AA6 B;  2KZ7 A;  3BRZ A;  4G76 A;  4PR7 A;  2GE4 A;  4RLC A;  4XNL A;  4KR4 A;  3VZU X;  3UPG A;  2QTK A;  1GFP A;  3LK4 2;  2XTR A;  2LHF A;  3O0E A;  5E79 O;  3DWO X;  2XMX A;  4Z3T A;  4GCP A;  2R4N A;  3VE1 A;  5G3A A;  5GV0 A;  4XNK A;  4BUM X;  2J1N A;  4D64 A;  4C69 X;  1ZHX A;  1HXT A;  3LK3 B;  4GF4 A;  4FSP A;  4O4U A;  4E1T A;  2Y0H A;  2K0L A;  2KZ7 B;  3LK2 A;  4CTD A;  3A0B O;  3SZV A;  4FSO A;  2Y2X A;  3DZM A;  5G39 A;  5B66 O;  5EE2 A;  1Q9G A;  3AAA A;  4O3W A;  4U9C A;  4RJW A;  5TIS O;  3KZI O;  3KVD D;  4LSH A;  1QJP A;  2POR A;  5FVN A;  2IWV A;  2ODJ A;  2JQY A;  2K4T A;  3C5O A;  3VE2 A;  2YPV A;  1MM4 A;  3A0H O;  3DA4 A;  4FMS A;  2ERV A;  3POR A;  1HXU A;  2R8A A;  2XE1 A;  2LFU A;  3LK2 B;  3PRN A;  4AKR A;  2YNK A;  5GTI O;  4FRT A;  2R4O A;  4AYD C;  3EMN X;  4JFB A;  4G75 A;  2XE5 A;  1THQ A;  1HXX A;  3PGR A;  3T20 A;  3AAA B;  4K3B A;  1ORM A;  3PGS A;  4C4V B;  2R4P A;  4GCQ A;  4FZN A;  4N74 A;  4AYM C;  3VY9 X;  4C00 A;  4AYN A;  1G90 A;  4O3X B;  5G26 A;  3DA3 A;  1ZHZ A;  4AKR B;  7PRN A;  5KAF O;  1E54 A;  1OSM A;  1PHO A;  4PJ0 O;  2PRN A;  3VZW X;  2F1T A;  3HWB A;  3TZG A;  3POU A;  1GFQ A;  2XE2 A;  4AKM A;  3AAE A;  4N59 A;  2XTQ A;  4FUV A;  5PRN A;  2R4L A;  3AA1 A;  3PGU A;  4C4V A;  3LK4 1;  3POX A;  4PUX A;  1T1L A;  1IZN B;  5DL8 A;  3RBH A;  4JCH A;  2R88 A;  3PQS A;  4FT6 A;  3BS0 A;  4RLB A;  4AFK A;  4FES A;  5B5E O;  2WJQ A;  2WJR A;  2WVP A;  3AAE B;  3A2S X;  3POQ A;  3PF1 A;  1BT9 A;  3UU2 A;  2Y7S A;  2ZLD A;  4N75 A;  4KR8 A;  5AFU K;  3AA1 B;  4AUI A;  1GFM A;  3SYS A;  2JMM A;  4GHB A;  4UB6 O;  3HOE A;  3SZD A;  4LSF A;  4D65 A;  4FQE A;  1IZN A;  2F1C X;  1ZHW A;  3AA7 A;  2N2L A;  3GP6 A;  2W80 C;  4O3Z A;  2KDY A;  3BRY A;  4KRA A;  4E1S A;  2KC0 A;  5D5D A;  5G38 A;  4D5U A;  5AFU L;  1BXW A;  4FOZ A;  2M07 A;  4O3Y A;  3FYX A;  4AZL A;  2FGQ X;  3JTY A;  2KXP B;  4O4X A;  3SYB A;  3QRA A;  1S5L O;  3K19 A;  5ADX K;  2W81 C;  4B61 A;  1MPF A;  1ZHY A;  4UB8 O;  4FRX A;  4N58 A;  3HOL A;  3AA7 B;  4FZL A;  5T5F A;  3T0S A;  1QJ8 A;  2M06 A;  1P4T A;  4LSI A;  4K3C A;  5DL6 A;  3SY7 A;  1ZHT A;  2IWW A;  6PRN A;  1YS5 A;  4F4B A;  2XE3 A;  2O4V A;  2AXT O;  3AA0 B;  2F1V A;  5H2F O;  4AYE C;  5IYU A;  2MHL A;  5ADX L;  2FGR A;  2OMF A;  3HW9 A;  2MNH A;  3SY9 A;  3WU2 O;  1BH3 A;  2KXP A;  3WI4 A;  3NSG A;  3V8U A;  8PRN A;  3VZT X;  4IL6 O;  1MM5 A;  3AA6 A;  4AYI D;  3NJT A;  2Y0K A;  5JDP A;  4LSE A;  1T16 A;  2XG6 A;  3UAQ A; 
#chains in the Genus database with same CATH homology
 1GFO A;  1PRN A;  4FZM A;  1H6S 1;  3AA0 A;  1Q9F A;  3QRC A;  4QQ1 A;  3VY8 X;  1QJ9 A;  4GCS A;  4RL9 A;  4O49 A;  1OPF A;  2X27 X;  2Y0L A;  5DL5 A;  3PQU A;  3LK3 A;  1GFN A;  2N2M A;  3WI5 A;  2ZFG A;  3G7G A;  5DL7 A;  3T24 A;  2J4U P;  4RJX A;  3AA6 B;  2KZ7 A;  4G76 A;  4RLC A;  2GE4 A;  4XNL A;  3UPG A;  4KR4 A;  3VZU X;  2QTK A;  1GFP A;  3LK4 2;  2XTR A;  2LHF A;  3O0E A;  2XMX A;  4Z3T A;  4GCP A;  3VE1 A;  5GV0 A;  4XNK A;  4BUM X;  2J1N A;  4D64 A;  4C69 X;  1ZHX A;  1HXT A;  3LK3 B;  4GF4 A;  4FSP A;  4O4U A;  4E1T A;  2Y0H A;  2K0L A;  2KZ7 B;  3LK2 A;  3SZV A;  4FSO A;  2Y2X A;  5EE2 A;  1Q9G A;  3AAA A;  4O3W A;  4U9C A;  4RJW A;  4LSH A;  3KVD D;  1QJP A;  2POR A;  5FVN A;  3VE2 A;  2ODJ A;  3C5O A;  2K4T A;  2YPV A;  1MM4 A;  3DA4 A;  4FMS A;  2ERV A;  3POR A;  1HXU A;  2XE1 A;  3PRN A;  2LFU A;  3LK2 B;  4AKR A;  2YNK A;  4FRT A;  4AYD C;  3EMN X;  4JFB A;  4G75 A;  2XE5 A;  1THQ A;  1HXX A;  3T20 A;  3AAA B;  1ORM A;  4GCQ A;  4FZN A;  4AYM C;  3VY9 X;  4AYN A;  1G90 A;  4O3X B;  5G26 A;  3DA3 A;  1ZHZ A;  4AKR B;  7PRN A;  1E54 A;  1OSM A;  1PHO A;  3VZW X;  2PRN A;  2F1T A;  3HWB A;  3TZG A;  3POU A;  1GFQ A;  2XE2 A;  4AKM A;  3AAE A;  4N59 A;  2XTQ A;  4FUV A;  5PRN A;  3AA1 A;  3LK4 1;  3POX A;  4PUX A;  5DL8 A;  1IZN B;  3RBH A;  4JCH A;  4FT6 A;  3PQS A;  4RLB A;  4AFK A;  4FES A;  3AAE B;  3A2S X;  3POQ A;  1BT9 A;  3UU2 A;  2Y7S A;  2ZLD A;  5AFU K;  4KR8 A;  3AA1 B;  4AUI A;  1GFM A;  3SYS A;  2JMM A;  4GHB A;  3HOE A;  3SZD A;  4LSF A;  4D65 A;  1IZN A;  1ZHW A;  3AA7 A;  2N2L A;  3GP6 A;  2W80 C;  4O3Z A;  2KDY A;  4KRA A;  4E1S A;  2KC0 A;  5D5D A;  4D5U A;  5AFU L;  1BXW A;  4FOZ A;  2M07 A;  4O3Y A;  3FYX A;  4AZL A;  2FGQ X;  3JTY A;  2KXP B;  4O4X A;  3SYB A;  3QRA A;  3K19 A;  5ADX K;  2W81 C;  4B61 A;  1MPF A;  1ZHY A;  4FRX A;  4N58 A;  3HOL A;  3AA7 B;  4FZL A;  5T5F A;  3T0S A;  1QJ8 A;  2M06 A;  1P4T A;  4LSI A;  3SY7 A;  5DL6 A;  1ZHT A;  6PRN A;  1YS5 A;  4F4B A;  2XE3 A;  2O4V A;  3AA0 B;  2F1V A;  5IYU A;  4AYE C;  2MHL A;  5ADX L;  2FGR A;  2OMF A;  3HW9 A;  2MNH A;  3SY9 A;  1BH3 A;  2KXP A;  3WI4 A;  3NSG A;  3V8U A;  8PRN A;  3VZT X;  1MM5 A;  3AA6 A;  4AYI D;  5JDP A;  2Y0K A;  4LSE A;  2XG6 A;  3UAQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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