4FO8A

Pseudomonas aeruginosa metap with met, in mn form
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
259
structure length
259
Chain Sequence
TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTSA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Methionine aminopeptidase
total genus 83
structure length 259
sequence length 259
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fo8A00
3PKCA 4A6VA 4PNCA 2BWTA 1C24A 3D27A 3MATA 4RZYA 3IU7A 2BWXA 5E5BA 2P9AA 4IDYA 2ADUA 3CTZA 2GU7A 1XGSA 1YW8A 1QXZA 1M35A 5JFRA 3FMRA 4U6JA 4U76A 3FM3A 2BWUA 1YW7A 4PV4A 3Q6DA 2GTXA 1W2MA 4U70A 1WN1A 2BB7A 2GG3A 1C22A 2NQ6A 2BH3A 1KQ0A 2GGCA 2P98A 3CB6A 1Y1NA 2MATA 4ZNGA 3TB5A 2GG5A 2DFIA 2BWYA 4JUQA 1QXWA 2V3ZA 1WBQA 2Q95A 4FLJA 1PV9A 4Z7MA 4FLLA 3S6BA 3IU9A 1WL6A 1WL9A 3L24A 3PKEA 4IPAA 2BWVA 2GG2A 1XGNA 1BOAA 1C21A 1R5HA 3IG4A 2GA2A 4FLIA 4U75A 1XGMA 2EVCA 4A6WA 4R60A 2B3HA 4FO8A 2BHCA 1CHMA 3BIPA 2BHAA 2BHBA 1C27A 2GU6A 4S01A 1N51A 1R5GA 2V3YA 2ZSGA 5FCHA 5JHUA 4IKUA 1XGOA 2EA2A 4RGZ1 1C23A 4MATA 2GG9A 4ZWOA 3TAVA 3PKBA 2IW2A 4KM3A 1W7VA 2Q93A 4EGEA 4U1BA 2B3KA 4HXXA 4IF7A 2Q92A 1QXYA 2Q8KA 4B28A 4OOKA 5JI6A 4U6CA 5CIKA 1WY2A 2BHDA 2GU5A 5D6FA 2P99A 4IKTA 5FCFA 2NQ7A 4FUKA 2EA4A 3L7GA 2HOWA 4IECA 4U73A 1JAWA 4U6WA 1YVMA 5D6EA 3PKAA 4S2TP 2EVMA 3MX6A 1MATA 2Q96A 5CE6A 1XNZA 1B59A 2V6CA 3FMQA 5CDEA 5CNXA 2GU4A 1A16A 1WKMA 5CDVA 3CB5A 4IKSA 2B3LA 1B6AA 2EVOA 5CLSA 3BITA 4QR8A 2V3XA 2G6PA 1QZYA 4FLKA 4IU6A 1KQ9A 2BWSA 4FO7A 4RZZA 2GG8A 2Q94A 3BIQA 3IU8A 4U71A 3RORA 4U69A 4U6ZA 4FKCA 1YJ3A 2GG7A 2GG0A 2GZ5A 2OAZA 4S2RP 4U6EA 4S00A 3PKDA 1WLRA 4IKRA 2GGBA 4ZWPA 5CDLA 1YW9A 3MR1A 2OKNA 2BN7A 1BN5A 4ZWUA 1R58A 3RVAA 2BWWA 1KP0A 1O0XA
chains in the Genus database with same CATH superfamily
3PKCA 4A6VA 4PNCA 2BWTA 1C24A 3D27A 3MATA 4RZYA 3IU7A 2BWXA 5E5BA 2P9AA 4IDYA 2ADUA 3CTZA 2GU7A 1XGSA 1YW8A 1QXZA 1M35A 5JFRA 3FMRA 4U6JA 4U76A 3FM3A 2BWUA 1YW7A 4PV4A 3Q6DA 2GTXA 1W2MA 4U70A 1WN1A 2BB7A 2GG3A 1C22A 2NQ6A 2BH3A 1KQ0A 2GGCA 2P98A 3CB6A 1Y1NA 2MATA 4ZNGA 3TB5A 2GG5A 2DFIA 2BWYA 4JUQA 1QXWA 2V3ZA 1WBQA 2Q95A 4FLJA 1PV9A 4Z7MA 4FLLA 3S6BA 3IU9A 1WL6A 1WL9A 3L24A 3PKEA 4IPAA 2BWVA 2GG2A 1XGNA 1BOAA 1C21A 1R5HA 3IG4A 2GA2A 4FLIA 4U75A 1XGMA 2EVCA 4A6WA 4R60A 2B3HA 4FO8A 2BHCA 1CHMA 3BIPA 2BHAA 2BHBA 1C27A 2GU6A 4S01A 1N51A 1R5GA 2V3YA 2ZSGA 5FCHA 5JHUA 4IKUA 1XGOA 2EA2A 4RGZ1 1C23A 4MATA 2GG9A 4ZWOA 3TAVA 3PKBA 2IW2A 4KM3A 1W7VA 2Q93A 4EGEA 4U1BA 2B3KA 4HXXA 4IF7A 2Q92A 1QXYA 2Q8KA 4B28A 4OOKA 5JI6A 4U6CA 5CIKA 1WY2A 2BHDA 2GU5A 5D6FA 2P99A 4IKTA 5FCFA 2NQ7A 4FUKA 2EA4A 3L7GA 2HOWA 4IECA 4U73A 1JAWA 4U6WA 1YVMA 5D6EA 3PKAA 4S2TP 2EVMA 3MX6A 1MATA 2Q96A 5CE6A 1XNZA 1B59A 2V6CA 3FMQA 5CDEA 5CNXA 2GU4A 1A16A 1WKMA 5CDVA 3CB5A 4IKSA 2B3LA 1B6AA 2EVOA 5CLSA 3BITA 4QR8A 2V3XA 2G6PA 1QZYA 4FLKA 4IU6A 1KQ9A 2BWSA 4FO7A 4RZZA 2GG8A 2Q94A 3BIQA 3IU8A 4U71A 3RORA 4U69A 4U6ZA 4FKCA 1YJ3A 2GG7A 2GG0A 2GZ5A 2OAZA 4S2RP 4U6EA 4S00A 3PKDA 1WLRA 4IKRA 2GGBA 4ZWPA 5CDLA 1YW9A 3MR1A 2OKNA 2BN7A 1BN5A 4ZWUA 1R58A 3RVAA 2BWWA 1KP0A 1O0XA
chains in the Genus database with same CATH topology
3PKCA 4A6VA 4PNCA 2BWTA 1C24A 3D27A 3MATA 4RZYA 3IU7A 2BWXA 5E5BA 2P9AA 4IDYA 2ADUA 3CTZA 2GU7A 1XGSA 1YW8A 1QXZA 1M35A 5JFRA 3FMRA 4U6JA 4U76A 3FM3A 2BWUA 1YW7A 4PV4A 3Q6DA 2GTXA 1W2MA 4U70A 1WN1A 2BB7A 2GG3A 1C22A 2NQ6A 2BH3A 1KQ0A 2GGCA 2P98A 3CB6A 1Y1NA 2MATA 4ZNGA 3TB5A 2GG5A 2DFIA 2BWYA 4JUQA 1QXWA 2V3ZA 1WBQA 2Q95A 4FLJA 1PV9A 4Z7MA 4FLLA 3S6BA 3IU9A 1WL6A 1WL9A 3L24A 3PKEA 4IPAA 2BWVA 2GG2A 1XGNA 1BOAA 1C21A 1R5HA 3IG4A 2GA2A 4FLIA 4U75A 1XGMA 2EVCA 4A6WA 4R60A 2B3HA 4FO8A 2BHCA 1CHMA 3BIPA 2BHAA 2BHBA 1C27A 2GU6A 4S01A 1N51A 1R5GA 2V3YA 2ZSGA 5FCHA 5JHUA 4IKUA 1XGOA 2EA2A 4RGZ1 1C23A 4MATA 2GG9A 4ZWOA 3TAVA 3PKBA 2IW2A 4KM3A 1W7VA 2Q93A 4EGEA 4U1BA 2B3KA 4HXXA 4IF7A 2Q92A 1QXYA 2Q8KA 4B28A 4OOKA 5JI6A 4U6CA 5CIKA 1WY2A 2BHDA 2GU5A 5D6FA 2P99A 4IKTA 5FCFA 2NQ7A 4FUKA 2EA4A 3L7GA 2HOWA 4IECA 4U73A 1JAWA 4U6WA 1YVMA 5D6EA 3PKAA 4S2TP 2EVMA 3MX6A 1MATA 2Q96A 5CE6A 1XNZA 1B59A 2V6CA 3FMQA 5CDEA 5CNXA 2GU4A 1A16A 1WKMA 5CDVA 3CB5A 4IKSA 2B3LA 1B6AA 2EVOA 5CLSA 3BITA 4QR8A 2V3XA 2G6PA 1QZYA 4FLKA 4IU6A 1KQ9A 2BWSA 4FO7A 4RZZA 2GG8A 2Q94A 3BIQA 3IU8A 4U71A 3RORA 4U69A 4U6ZA 4FKCA 1YJ3A 2GG7A 2GG0A 2GZ5A 2OAZA 4S2RP 4U6EA 4S00A 3PKDA 1WLRA 4IKRA 2GGBA 4ZWPA 5CDLA 1YW9A 3MR1A 2OKNA 2BN7A 1BN5A 4ZWUA 1R58A 3RVAA 2BWWA 1KP0A 1O0XA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3PKC A;  4A6V A;  4PNC A;  2BWT A;  1C24 A;  3D27 A;  3MAT A;  4RZY A;  3IU7 A;  2BWX A;  5E5B A;  2P9A A;  4IDY A;  2ADU A;  3CTZ A;  2GU7 A;  1XGS A;  1YW8 A;  1QXZ A;  1M35 A;  5JFR A;  3FMR A;  4U6J A;  4U76 A;  3FM3 A;  2BWU A;  1YW7 A;  4PV4 A;  3Q6D A;  2GTX A;  1W2M A;  4U70 A;  1WN1 A;  2BB7 A;  2GG3 A;  1C22 A;  2NQ6 A;  2BH3 A;  1KQ0 A;  2GGC A;  2P98 A;  3CB6 A;  1Y1N A;  2MAT A;  4ZNG A;  3TB5 A;  2GG5 A;  2DFI A;  2BWY A;  4JUQ A;  1QXW A;  2V3Z A;  1WBQ A;  2Q95 A;  4FLJ A;  1PV9 A;  4Z7M A;  4FLL A;  3S6B A;  3IU9 A;  1WL6 A;  1WL9 A;  3L24 A;  3PKE A;  4IPA A;  2BWV A;  2GG2 A;  1XGN A;  1BOA A;  1C21 A;  1R5H A;  3IG4 A;  2GA2 A;  4FLI A;  4U75 A;  1XGM A;  2EVC A;  4A6W A;  4R60 A;  2B3H A;  4FO8 A;  2BHC A;  1CHM A;  3BIP A;  2BHA A;  2BHB A;  1C27 A;  2GU6 A;  4S01 A;  1N51 A;  1R5G A;  2V3Y A;  2ZSG A;  5FCH A;  5JHU A;  4IKU A;  1XGO A;  2EA2 A;  4RGZ 1;  1C23 A;  4MAT A;  2GG9 A;  4ZWO A;  3TAV A;  3PKB A;  2IW2 A;  4KM3 A;  1W7V A;  2Q93 A;  4EGE A;  4U1B A;  2B3K A;  4HXX A;  4IF7 A;  2Q92 A;  1QXY A;  2Q8K A;  4B28 A;  4OOK A;  5JI6 A;  4U6C A;  5CIK A;  1WY2 A;  2BHD A;  2GU5 A;  5D6F A;  2P99 A;  4IKT A;  5FCF A;  2NQ7 A;  4FUK A;  2EA4 A;  3L7G A;  2HOW A;  4IEC A;  4U73 A;  1JAW A;  4U6W A;  1YVM A;  5D6E A;  3PKA A;  4S2T P;  2EVM A;  3MX6 A;  1MAT A;  2Q96 A;  5CE6 A;  1XNZ A;  1B59 A;  2V6C A;  3FMQ A;  5CDE A;  5CNX A;  2GU4 A;  1A16 A;  1WKM A;  5CDV A;  3CB5 A;  4IKS A;  2B3L A;  1B6A A;  2EVO A;  5CLS A;  3BIT A;  4QR8 A;  2V3X A;  2G6P A;  1QZY A;  4FLK A;  4IU6 A;  1KQ9 A;  2BWS A;  4FO7 A;  4RZZ A;  2GG8 A;  2Q94 A;  3BIQ A;  3IU8 A;  4U71 A;  3ROR A;  4U69 A;  4U6Z A;  4FKC A;  1YJ3 A;  2GG7 A;  2GG0 A;  2GZ5 A;  2OAZ A;  4S2R P;  4U6E A;  4S00 A;  3PKD A;  1WLR A;  4IKR A;  2GGB A;  4ZWP A;  5CDL A;  1YW9 A;  3MR1 A;  2OKN A;  2BN7 A;  1BN5 A;  4ZWU A;  1R58 A;  3RVA A;  2BWW A;  1KP0 A;  1O0X A; 
#chains in the Genus database with same CATH topology
 3PKC A;  4A6V A;  4PNC A;  2BWT A;  1C24 A;  3D27 A;  3MAT A;  4RZY A;  3IU7 A;  2BWX A;  5E5B A;  2P9A A;  4IDY A;  2ADU A;  3CTZ A;  2GU7 A;  1XGS A;  1YW8 A;  1QXZ A;  1M35 A;  5JFR A;  3FMR A;  4U6J A;  4U76 A;  3FM3 A;  2BWU A;  1YW7 A;  4PV4 A;  3Q6D A;  2GTX A;  1W2M A;  4U70 A;  1WN1 A;  2BB7 A;  2GG3 A;  1C22 A;  2NQ6 A;  2BH3 A;  1KQ0 A;  2GGC A;  2P98 A;  3CB6 A;  1Y1N A;  2MAT A;  4ZNG A;  3TB5 A;  2GG5 A;  2DFI A;  2BWY A;  4JUQ A;  1QXW A;  2V3Z A;  1WBQ A;  2Q95 A;  4FLJ A;  1PV9 A;  4Z7M A;  4FLL A;  3S6B A;  3IU9 A;  1WL6 A;  1WL9 A;  3L24 A;  3PKE A;  4IPA A;  2BWV A;  2GG2 A;  1XGN A;  1BOA A;  1C21 A;  1R5H A;  3IG4 A;  2GA2 A;  4FLI A;  4U75 A;  1XGM A;  2EVC A;  4A6W A;  4R60 A;  2B3H A;  4FO8 A;  2BHC A;  1CHM A;  3BIP A;  2BHA A;  2BHB A;  1C27 A;  2GU6 A;  4S01 A;  1N51 A;  1R5G A;  2V3Y A;  2ZSG A;  5FCH A;  5JHU A;  4IKU A;  1XGO A;  2EA2 A;  4RGZ 1;  1C23 A;  4MAT A;  2GG9 A;  4ZWO A;  3TAV A;  3PKB A;  2IW2 A;  4KM3 A;  1W7V A;  2Q93 A;  4EGE A;  4U1B A;  2B3K A;  4HXX A;  4IF7 A;  2Q92 A;  1QXY A;  2Q8K A;  4B28 A;  4OOK A;  5JI6 A;  4U6C A;  5CIK A;  1WY2 A;  2BHD A;  2GU5 A;  5D6F A;  2P99 A;  4IKT A;  5FCF A;  2NQ7 A;  4FUK A;  2EA4 A;  3L7G A;  2HOW A;  4IEC A;  4U73 A;  1JAW A;  4U6W A;  1YVM A;  5D6E A;  3PKA A;  4S2T P;  2EVM A;  3MX6 A;  1MAT A;  2Q96 A;  5CE6 A;  1XNZ A;  1B59 A;  2V6C A;  3FMQ A;  5CDE A;  5CNX A;  2GU4 A;  1A16 A;  1WKM A;  5CDV A;  3CB5 A;  4IKS A;  2B3L A;  1B6A A;  2EVO A;  5CLS A;  3BIT A;  4QR8 A;  2V3X A;  2G6P A;  1QZY A;  4FLK A;  4IU6 A;  1KQ9 A;  2BWS A;  4FO7 A;  4RZZ A;  2GG8 A;  2Q94 A;  3BIQ A;  3IU8 A;  4U71 A;  3ROR A;  4U69 A;  4U6Z A;  4FKC A;  1YJ3 A;  2GG7 A;  2GG0 A;  2GZ5 A;  2OAZ A;  4S2R P;  4U6E A;  4S00 A;  3PKD A;  1WLR A;  4IKR A;  2GGB A;  4ZWP A;  5CDL A;  1YW9 A;  3MR1 A;  2OKN A;  2BN7 A;  1BN5 A;  4ZWU A;  1R58 A;  3RVA A;  2BWW A;  1KP0 A;  1O0X A; 
#chains in the Genus database with same CATH homology
 3PKC A;  4A6V A;  4PNC A;  2BWT A;  1C24 A;  3D27 A;  3MAT A;  4RZY A;  3IU7 A;  2BWX A;  5E5B A;  2P9A A;  4IDY A;  2ADU A;  3CTZ A;  2GU7 A;  1XGS A;  1YW8 A;  1QXZ A;  1M35 A;  5JFR A;  3FMR A;  4U6J A;  4U76 A;  3FM3 A;  2BWU A;  1YW7 A;  4PV4 A;  3Q6D A;  2GTX A;  1W2M A;  4U70 A;  1WN1 A;  2BB7 A;  2GG3 A;  1C22 A;  2NQ6 A;  2BH3 A;  1KQ0 A;  2GGC A;  2P98 A;  3CB6 A;  1Y1N A;  2MAT A;  4ZNG A;  3TB5 A;  2GG5 A;  2DFI A;  2BWY A;  4JUQ A;  1QXW A;  2V3Z A;  1WBQ A;  2Q95 A;  4FLJ A;  1PV9 A;  4Z7M A;  4FLL A;  3S6B A;  3IU9 A;  1WL6 A;  1WL9 A;  3L24 A;  3PKE A;  4IPA A;  2BWV A;  2GG2 A;  1XGN A;  1BOA A;  1C21 A;  1R5H A;  3IG4 A;  2GA2 A;  4FLI A;  4U75 A;  1XGM A;  2EVC A;  4A6W A;  4R60 A;  2B3H A;  4FO8 A;  2BHC A;  1CHM A;  3BIP A;  2BHA A;  2BHB A;  1C27 A;  2GU6 A;  4S01 A;  1N51 A;  1R5G A;  2V3Y A;  2ZSG A;  5FCH A;  5JHU A;  4IKU A;  1XGO A;  2EA2 A;  4RGZ 1;  1C23 A;  4MAT A;  2GG9 A;  4ZWO A;  3TAV A;  3PKB A;  2IW2 A;  4KM3 A;  1W7V A;  2Q93 A;  4EGE A;  4U1B A;  2B3K A;  4HXX A;  4IF7 A;  2Q92 A;  1QXY A;  2Q8K A;  4B28 A;  4OOK A;  5JI6 A;  4U6C A;  5CIK A;  1WY2 A;  2BHD A;  2GU5 A;  5D6F A;  2P99 A;  4IKT A;  5FCF A;  2NQ7 A;  4FUK A;  2EA4 A;  3L7G A;  2HOW A;  4IEC A;  4U73 A;  1JAW A;  4U6W A;  1YVM A;  5D6E A;  3PKA A;  4S2T P;  2EVM A;  3MX6 A;  1MAT A;  2Q96 A;  5CE6 A;  1XNZ A;  1B59 A;  2V6C A;  3FMQ A;  5CDE A;  5CNX A;  2GU4 A;  1A16 A;  1WKM A;  5CDV A;  3CB5 A;  4IKS A;  2B3L A;  1B6A A;  2EVO A;  5CLS A;  3BIT A;  4QR8 A;  2V3X A;  2G6P A;  1QZY A;  4FLK A;  4IU6 A;  1KQ9 A;  2BWS A;  4FO7 A;  4RZZ A;  2GG8 A;  2Q94 A;  3BIQ A;  3IU8 A;  4U71 A;  3ROR A;  4U69 A;  4U6Z A;  4FKC A;  1YJ3 A;  2GG7 A;  2GG0 A;  2GZ5 A;  2OAZ A;  4S2R P;  4U6E A;  4S00 A;  3PKD A;  1WLR A;  4IKR A;  2GGB A;  4ZWP A;  5CDL A;  1YW9 A;  3MR1 A;  2OKN A;  2BN7 A;  1BN5 A;  4ZWU A;  1R58 A;  3RVA A;  2BWW A;  1KP0 A;  1O0X A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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