4FQAA

Crystal structure of toxic effector tse1
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
155
structure length
155
Chain Sequence
DSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRASLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords toxic effector Tse1
publication title Structural insight on toxic effector Tse1
rcsb
source organism Pseudomonas aeruginosa pao1
total genus 41
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2012-06-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4fqaA00
3I86A 4EQAA 2IF6A 3GT2A 4FQBA 4Q4GX 2VPSA 2IOBA 4EOBA 4F4MA 2K1GA 3H41A 4R0KA 4F0VA 4FDYA 2HBWA 3KW0A 2LRJA 4OLKA 3A2YA 3VPJA 4FGEA 4FGDA 2FG0A 4Q4TA 4EQ8A 3VPIA 4FQAA 4HZBA 3PBCA 4CGKA 4CSHA 4JXBA 3A2ZA 4HZ9A 2IO7A 2IO8A 2K3AA 2EVRA 4FGIA 2VOBA 2IO9A 2VPMA 4Q4NA 4CT3A 2XIVA 3S0QA 4F0WA 3NE0A 3PVQA 3O98A 4LJ1A 3M1UA 2IOAA 3PBIA 3A30A 4HPEA 3NPFA
chains in the Genus database with same CATH superfamily
4JURA 3I86A 4EQAA 2IF6A 4J30A 3GT2A 4FQBA 4Q4GX 2VPSA 2IOBA 4EOBA 4F4MA 4HFKA 2K1GA 3H41A 4HFLA 4R0KA 4F0VA 4FDYA 2HBWA 3KW0A 2LRJA 4OLKA 3A2YA 3VPJA 4FGEA 4FGDA 2FG0A 4Q4TA 4EQ8A 3VPIA 4FQAA 4HZBA 3PBCA 4CGKA 4CSHA 4JXBA 3A2ZA 4HZ9A 2IO7A 2IO8A 2WP7A 3EBQA 2K3AA 2EVRA 4FGIA 2VOBA 2IO9A 2VPMA 4Q4NA 4HFFA 2XIVA 3S0QA 4CT3A 4F0WA 3NE0A 3PVQA 3O98A 4LJ1A 4J32A 3M1UA 2IOAA 3PBIA 3A30A 4HPEA 3NPFA
chains in the Genus database with same CATH topology
3I86A 4EQAA 2IF6A 3GT2A 4FQBA 4Q4GX 2VPSA 2IOBA 4EOBA 4F4MA 2K1GA 3H41A 4R0KA 4F0VA 4FDYA 2HBWA 3KW0A 2LRJA 4OLKA 3A2YA 3VPJA 4FGEA 4FGDA 2FG0A 4Q4TA 4EQ8A 3VPIA 4FQAA 4HZBA 3PBCA 4CGKA 4CSHA 4JXBA 3A2ZA 4HZ9A 2IO7A 2IO8A 2K3AA 2EVRA 4FGIA 2VOBA 2IO9A 2VPMA 4Q4NA 4CT3A 2XIVA 3S0QA 4F0WA 3NE0A 3PVQA 3O98A 4LJ1A 3M1UA 2IOAA 3PBIA 3A30A 4HPEA 3NPFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I86 A;  4EQA A;  2IF6 A;  3GT2 A;  4FQB A;  4Q4G X;  2VPS A;  2IOB A;  4EOB A;  4F4M A;  2K1G A;  3H41 A;  4R0K A;  4F0V A;  4FDY A;  2HBW A;  3KW0 A;  2LRJ A;  4OLK A;  3A2Y A;  3VPJ A;  4FGE A;  4FGD A;  2FG0 A;  4Q4T A;  4EQ8 A;  3VPI A;  4FQA A;  4HZB A;  3PBC A;  4CGK A;  4CSH A;  4JXB A;  3A2Z A;  4HZ9 A;  2IO7 A;  2IO8 A;  2K3A A;  2EVR A;  4FGI A;  2VOB A;  2IO9 A;  2VPM A;  4Q4N A;  4CT3 A;  2XIV A;  3S0Q A;  4F0W A;  3NE0 A;  3PVQ A;  3O98 A;  4LJ1 A;  3M1U A;  2IOA A;  3PBI A;  3A30 A;  4HPE A;  3NPF A; 
#chains in the Genus database with same CATH topology
 4JUR A;  3I86 A;  4EQA A;  2IF6 A;  4J30 A;  3GT2 A;  4FQB A;  4Q4G X;  2VPS A;  2IOB A;  4EOB A;  4F4M A;  4HFK A;  2K1G A;  3H41 A;  4HFL A;  4R0K A;  4F0V A;  4FDY A;  2HBW A;  3KW0 A;  2LRJ A;  4OLK A;  3A2Y A;  3VPJ A;  4FGE A;  4FGD A;  2FG0 A;  4Q4T A;  4EQ8 A;  3VPI A;  4FQA A;  4HZB A;  3PBC A;  4CGK A;  4CSH A;  4JXB A;  3A2Z A;  4HZ9 A;  2IO7 A;  2IO8 A;  2WP7 A;  3EBQ A;  2K3A A;  2EVR A;  4FGI A;  2VOB A;  2IO9 A;  2VPM A;  4Q4N A;  4HFF A;  2XIV A;  3S0Q A;  4CT3 A;  4F0W A;  3NE0 A;  3PVQ A;  3O98 A;  4LJ1 A;  4J32 A;  3M1U A;  2IOA A;  3PBI A;  3A30 A;  4HPE A;  3NPF A; 
#chains in the Genus database with same CATH homology
 3I86 A;  4EQA A;  2IF6 A;  3GT2 A;  4FQB A;  4Q4G X;  2VPS A;  2IOB A;  4EOB A;  4F4M A;  2K1G A;  3H41 A;  4R0K A;  4F0V A;  4FDY A;  2HBW A;  3KW0 A;  2LRJ A;  4OLK A;  3A2Y A;  3VPJ A;  4FGE A;  4FGD A;  2FG0 A;  4Q4T A;  4EQ8 A;  3VPI A;  4FQA A;  4HZB A;  3PBC A;  4CGK A;  4CSH A;  4JXB A;  3A2Z A;  4HZ9 A;  2IO7 A;  2IO8 A;  2K3A A;  2EVR A;  4FGI A;  2VOB A;  2IO9 A;  2VPM A;  4Q4N A;  4CT3 A;  2XIV A;  3S0Q A;  4F0W A;  3NE0 A;  3PVQ A;  3O98 A;  4LJ1 A;  3M1U A;  2IOA A;  3PBI A;  3A30 A;  4HPE A;  3NPF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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