4FQEA

Kdgm porin
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
217
structure length
170
Chain Sequence
VSIDYRHEMQDGHKDRLLISHRFANGFGLSSEVKWAQVSNGTEVVASYVYKFNSVFSIEPGFSLESGSSNNNYRPYLRGRANVTDDLSVALRYRPYFKRKGYTLTGNIDYTFLKDYTIGYELEYKKGTSYDITHNVKLSYKWDKNWKPYVEVGNVSRQTRYRVGVQYSFH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Oligogalacturonate-specific porin kdgM
publication title Structure of the oligogalacturonate-specific KdgM porin.
pubmed doi rcsb
source organism Dickeya dadantii
total genus 46
structure length 170
sequence length 217
ec nomenclature
pdb deposition date 2012-06-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 4fqeA00
2IWWA 4PR7A 2WJQA 2F1CX 2JQYA 2X9KA 4FQEA 2IWVA 2WVPA 2WJRA 4CTDA
chains in the Genus database with same CATH superfamily
2R4NA 3UAQA 4PR7A 4PUXA 4D5UA 4FQEA 4FZNA 1ZHYA 1G90A 4JCHA 4AYDC 2F1TA 1ORMA 2Y0LA 2PRNA 4FZMA 5G39A 2R4OA 2ZLDA 1Q9FA 4RLCA 4UB8O 3DWNA 3SZDA 3A0HO 3HW9A 1GFMA 1YS5A 2R4LA 1H6S1 2R89A 3AA7B 3HOLA 4O3XB 5ADXL 2WJRA 4N59A 2XMXA 4O49A 2K0LA 3LK42 5KAFO 3AA0B 3LK2B 2M07A 4O4XA 1GFNA 3VE1A 5ADXK 5DL7A 1MPFA 4AFKA 5G38A 4BUMX 4FSOA 4XNLA 5GTIO 3SZVA 4RJXA 3WI4A 4CTDA 3POQA 5PRNA 2R4PA 3AAEA 4GCSA 4KR4A 4Z3TA 7PRNA 3POUA 5D5DA 3A0BO 3NSGA 1HXUA 4G76A 3WI5A 4FT6A 3WU2O 4AYMC 2FGRA 3HWBA 2LFUA 3LK41 2XG6A 3A2SX 3DZMA 4AYNA 2XE5A 2PORA 3FYXA 3PQUA 4AUIA 4AKMA 4GF4A 4LSIA 2IWVA 3PQSA 3UU2A 1E54A 2XE1A 3HOEA 1PHOA 2AXTO 3O0EA 3SY7A 2O4VA 3VE2A 4AZLA 4B61A 6PRNA 1HXTA 1ZHTA 4RL9A 1ZHWA 1MM5A 1GFPA 2J1NA 4FMSA 3JTYA 4C00A 3AA7A 3G7GA 1QJPA 2N2MA 2KC0A 3DWOX 4KRAA 1ZHZA 4XNKA 5DL5A 5EE2A 5E79O 3QRCA 4D65A 3AA0A 3LK2A 5H2FO 2R88A 4LSHA 4UB6O 1BT9A 5G3AA 5AFUL 5AFUK 4FOZA 2X27X 2JMMA 3LK3B 3V8UA 2KDYA 3QRAA 3T24A 2W80C 3PGSA 2N2LA 4N74A 3AA6B 1OSMA 5IYUA 3AA1B 3BS0A 1IZNB 1IZNA 2XE2A 3VY9X 3NJTA 4G75A 2Y7SA 4JFBA 4QQ1A 4O4UA 1MM4A 2WVPA 1ZHXA 3KZIO 3AAAB 2XTRA 1BXWA 2M06A 3AAAA 4AYEC 4AKRB 4GCQA 4D64A 3K19A 2IWWA 3BRZA 4LSEA 1PRNA 4N58A 1HXXA 3PRNA 4O3WA 3T20A 2YPVA 4FZLA 4K3BA 2KXPB 1THQA 1QJ9A 4E1SA 8PRNA 2GE4A 2XTQA 1T1LA 5GTHO 2Y0HA 3JCUO 4FRTA 5T5FA 2JQYA 5DL6A 5FVNA 2W81C 4K3CA 4GCPA 3BRYA 3LK3A 4IL6O 2LHFA 2OMFA 4N75A 4C4VB 2ODJA 4FESA 2ERVA 5G26A 3PORA 4C4VA 3KVDD 3DA4A 5JDPA 1Q9GA 3VZTX 3EMNX 3POXA 3AA1A 3SYBA 1BH3A 4O3ZA 3RBHA 2J4UP 3C5OA 3GP6A 4LSFA 4RJWA 2F1VA 4KR8A 1S5LO 2QTKA 1GFQA 2FGQX 2KZ7A 2KZ7B 3PGRA 4FUVA 5B66O 3VY8X 4AKRA 2WJQA 4E1TA 1T16A 2R8AA 4FRXA 5TISO 4C69X 4PJ0O 4GHBA 2Y2XA 4RLBA 2KXPA 1P4TA 4F4BA 3UPGA 3DA3A 3VZWX 2MNHA 2F1CX 2X9KA 5KAIO 3T0SA 2YNKA 3PGUA 5DL8A 4U9CA 3AAEB 2ZFGA 3SYSA 1GFOA 2K4TA 3SY9A 3VZUX 5B5EO 3TZGA 4AYID 1OPFA 4O3YA 3PF1A 2MHLA 5GV0A 2XE3A 2Y0KA 3AA6A 4FSPA 1QJ8A
chains in the Genus database with same CATH topology
2IWWA 4PR7A 2WJQA 2F1CX 2JQYA 2X9KA 4FQEA 2IWVA 2WVPA 2WJRA 4CTDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IWW A;  4PR7 A;  2WJQ A;  2F1C X;  2JQY A;  2X9K A;  4FQE A;  2IWV A;  2WVP A;  2WJR A;  4CTD A; 
#chains in the Genus database with same CATH topology
 2R4N A;  3UAQ A;  4PR7 A;  4PUX A;  4D5U A;  4FQE A;  4FZN A;  1ZHY A;  1G90 A;  4JCH A;  4AYD C;  2F1T A;  1ORM A;  2Y0L A;  2PRN A;  4FZM A;  5G39 A;  2R4O A;  2ZLD A;  1Q9F A;  4RLC A;  4UB8 O;  3DWN A;  3SZD A;  3A0H O;  3HW9 A;  1GFM A;  1YS5 A;  2R4L A;  1H6S 1;  2R89 A;  3AA7 B;  3HOL A;  4O3X B;  5ADX L;  2WJR A;  4N59 A;  2XMX A;  4O49 A;  2K0L A;  3LK4 2;  5KAF O;  3AA0 B;  3LK2 B;  2M07 A;  4O4X A;  1GFN A;  3VE1 A;  5ADX K;  5DL7 A;  1MPF A;  4AFK A;  5G38 A;  4BUM X;  4FSO A;  4XNL A;  5GTI O;  3SZV A;  4RJX A;  3WI4 A;  4CTD A;  3POQ A;  5PRN A;  2R4P A;  3AAE A;  4GCS A;  4KR4 A;  4Z3T A;  7PRN A;  3POU A;  5D5D A;  3A0B O;  3NSG A;  1HXU A;  4G76 A;  3WI5 A;  4FT6 A;  3WU2 O;  4AYM C;  2FGR A;  3HWB A;  2LFU A;  3LK4 1;  2XG6 A;  3A2S X;  3DZM A;  4AYN A;  2XE5 A;  2POR A;  3FYX A;  3PQU A;  4AUI A;  4AKM A;  4GF4 A;  4LSI A;  2IWV A;  3PQS A;  3UU2 A;  1E54 A;  2XE1 A;  3HOE A;  1PHO A;  2AXT O;  3O0E A;  3SY7 A;  2O4V A;  3VE2 A;  4AZL A;  4B61 A;  6PRN A;  1HXT A;  1ZHT A;  4RL9 A;  1ZHW A;  1MM5 A;  1GFP A;  2J1N A;  4FMS A;  3JTY A;  4C00 A;  3AA7 A;  3G7G A;  1QJP A;  2N2M A;  2KC0 A;  3DWO X;  4KRA A;  1ZHZ A;  4XNK A;  5DL5 A;  5EE2 A;  5E79 O;  3QRC A;  4D65 A;  3AA0 A;  3LK2 A;  5H2F O;  2R88 A;  4LSH A;  4UB6 O;  1BT9 A;  5G3A A;  5AFU L;  5AFU K;  4FOZ A;  2X27 X;  2JMM A;  3LK3 B;  3V8U A;  2KDY A;  3QRA A;  3T24 A;  2W80 C;  3PGS A;  2N2L A;  4N74 A;  3AA6 B;  1OSM A;  5IYU A;  3AA1 B;  3BS0 A;  1IZN B;  1IZN A;  2XE2 A;  3VY9 X;  3NJT A;  4G75 A;  2Y7S A;  4JFB A;  4QQ1 A;  4O4U A;  1MM4 A;  2WVP A;  1ZHX A;  3KZI O;  3AAA B;  2XTR A;  1BXW A;  2M06 A;  3AAA A;  4AYE C;  4AKR B;  4GCQ A;  4D64 A;  3K19 A;  2IWW A;  3BRZ A;  4LSE A;  1PRN A;  4N58 A;  1HXX A;  3PRN A;  4O3W A;  3T20 A;  2YPV A;  4FZL A;  4K3B A;  2KXP B;  1THQ A;  1QJ9 A;  4E1S A;  8PRN A;  2GE4 A;  2XTQ A;  1T1L A;  5GTH O;  2Y0H A;  3JCU O;  4FRT A;  5T5F A;  2JQY A;  5DL6 A;  5FVN A;  2W81 C;  4K3C A;  4GCP A;  3BRY A;  3LK3 A;  4IL6 O;  2LHF A;  2OMF A;  4N75 A;  4C4V B;  2ODJ A;  4FES A;  2ERV A;  5G26 A;  3POR A;  4C4V A;  3KVD D;  3DA4 A;  5JDP A;  1Q9G A;  3VZT X;  3EMN X;  3POX A;  3AA1 A;  3SYB A;  1BH3 A;  4O3Z A;  3RBH A;  2J4U P;  3C5O A;  3GP6 A;  4LSF A;  4RJW A;  2F1V A;  4KR8 A;  1S5L O;  2QTK A;  1GFQ A;  2FGQ X;  2KZ7 A;  2KZ7 B;  3PGR A;  4FUV A;  5B66 O;  3VY8 X;  4AKR A;  2WJQ A;  4E1T A;  1T16 A;  2R8A A;  4FRX A;  5TIS O;  4C69 X;  4PJ0 O;  4GHB A;  2Y2X A;  4RLB A;  2KXP A;  1P4T A;  4F4B A;  3UPG A;  3DA3 A;  3VZW X;  2MNH A;  2F1C X;  2X9K A;  5KAI O;  3T0S A;  2YNK A;  3PGU A;  5DL8 A;  4U9C A;  3AAE B;  2ZFG A;  3SYS A;  1GFO A;  2K4T A;  3SY9 A;  3VZU X;  5B5E O;  3TZG A;  4AYI D;  1OPF A;  4O3Y A;  3PF1 A;  2MHL A;  5GV0 A;  2XE3 A;  2Y0K A;  3AA6 A;  4FSP A;  1QJ8 A; 
#chains in the Genus database with same CATH homology
 2IWW A;  4PR7 A;  2WJQ A;  2F1C X;  2JQY A;  2X9K A;  4FQE A;  2IWV A;  2WVP A;  2WJR A;  4CTD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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