4FSPA

Crystal structure of pseudomonas aeruginosa occk11 (opdr)
Total Genus 100
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
399
structure length
364
Chain Sequence
LYFQGLEEGFLEDSRASLALRNFYMNRDFRKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVRLDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSSDLALFNRNRRFAGAAQADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADSLESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKGADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLYLTYELPLF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
molecule keywords Probable porin
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
total genus 100
structure length 364
sequence length 399
ec nomenclature
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fspA01
7PRNA 2XE1A 4KR8A 1PRNA 4LSEA 3SZDA 4BUMX 2O4VA 2PORA 4FT6A 1OPFA 3FYXA 1GFPA 5DL7A 3WI4A 4FRTA 4GCPA 2ZLDA 3SY9A 3POUA 3O0EA 2FGQX 2XG6A 2Y0HA 4FOZA 2XE2A 4D64A 5DL6A 3T0SA 2K4TA 4FSPA 4FMSA 4D5UA 4FSOA 1GFNA 4RJXA 3JTYA 4KRAA 3PRNA 3VY8X 2XE3A 2Y2XA 3UPGA 2J4UP 5DL5A 3SZVA 3VZWX 3WI5A 2ODJA 3VZTX 3SYSA 4AUIA 6PRNA 8PRNA 1HXXA 1PHOA 3HW9A 2ZFGA 3T20A 5FVNA 5PRNA 3SYBA 2PRNA 1HXTA 4C69X 1GFMA 1GFQA 4LSHA 2FGRA 3POQA 1BT9A 1E54A 4RJWA 3PORA 3VY9X 1BH3A 2OMFA 4KR4A 2Y0LA 3EMNX 1MPFA 3SY7A 2XE5A 4LSFA 3UU2A 3HWBA 3POXA 3K19A 2QTKA 3T24A 4FRXA 4LSIA 5DL8A 3A2SX 1GFOA 4GCSA 2J1NA 4GCQA 2Y0KA 1H6S1 4JFBA 1OSMA 1HXUA 3VZUX 4D65A 5JDPA 3NSGA
chains in the Genus database with same CATH superfamily
7PRNA 2XE1A 2KZ7A 3AAEA 3DZMA 3WU2O 4FESA 4AKRA 4KR8A 4RLBA 3AA0A 3VE2A 1PRNA 4AYNA 4O4UA 4JCHA 5D5DA 4LSEA 3SZDA 4BUMX 2O4VA 2PORA 5ADXK 4FT6A 1OPFA 3UAQA 3FYXA 1T16A 2WVPA 3VE1A 5ADXL 1GFPA 4FZLA 2KXPA 1MM4A 5DL7A 3WI4A 1ZHTA 4FRTA 2N2MA 5B66O 4UB6O 2KDYA 4GCPA 2ZLDA 3SY9A 4AZLA 3POUA 4FUVA 2M06A 1YS5A 3PGSA 3AA6A 3O0EA 2FGQX 2XG6A 4N58A 3LK3B 2Y0HA 4FOZA 2XE2A 3BRZA 4D64A 4F4BA 3KZIO 3BS0A 4XNKA 5DL6A 3T0SA 1QJPA 3HOLA 1QJ8A 3LK42 2K4TA 3PGRA 1ZHWA 4FMSA 4FSPA 2WJQA 2JMMA 3A0HO 4CTDA 4O3XB 4D5UA 4FSOA 1GFNA 3HOEA 4AYID 2YPVA 5IYUA 3KVDD 2F1CX 2Y7SA 4RJXA 5KAIO 3JTYA 3DWOX 3G7GA 1Q9GA 4FQEA 2WJRA 3PRNA 1IZNB 4GF4A 4KRAA 4Z3TA 3VY8X 2XE3A 2XTRA 4XNLA 1ZHZA 2LFUA 4PR7A 2Y2XA 1ZHXA 5G3AA 5KAFO 2MNHA 3PF1A 3LK3A 5GV0A 3UPGA 1Q9FA 2J4UP 1T1LA 5DL5A 5H2FO 4QQ1A 3LK2B 4UB8O 2MHLA 5AFUK 2IWWA 3TZGA 3SZVA 3PGUA 4AYDC 3VZWX 3WI5A 2ODJA 3VZTX 2W81C 1P4TA 4AFKA 3SYSA 5AFUL 3AAAB 4N59A 4N75A 4AUIA 1BXWA 4O3ZA 5E79O 1G90A 4O3YA 6PRNA 2R4LA 5TISO 1IZNA 2R88A 4FZNA 1MM5A 3BRYA 4U9CA 1HXXA 1PHOA 2YNKA 2R4OA 3HW9A 4AYMC 8PRNA 2ZFGA 2KZ7B 1QJ9A 3T20A 2N2LA 5FVNA 2KC0A 4C4VB 3AA1B 4PUXA 3PQSA 5PRNA 3SYBA 1S5LO 4AYEC 2PRNA 4RL9A 2JQYA 3LK2A 5G26A 2F1TA 1HXTA 5T5FA 4IL6O 4C69X 5GTHO 1GFMA 1GFQA 2X27X 4LSHA 2FGRA 3POQA 2R8AA 3NJTA 1BT9A 2K0LA 3LK41 3PQUA 3RBHA 2F1VA 4B61A 1E54A 3DWNA 4G76A 4RJWA 3C5OA 3PORA 3AA6B 3VY9X 4K3CA 2X9KA 1BH3A 2OMFA 2Y0LA 3AA7B 4KR4A 4E1SA 1THQA 4O3WA 3EMNX 1MPFA 2LHFA 4FZMA 3GP6A 4C4VA 3AA1A 3QRAA 3SY7A 2XE5A 4LSFA 3V8UA 4AKMA 5GTIO 3JCUO 2XMXA 3UU2A 3HWBA 3AAEB 2ERVA 4AKRB 4O4XA 3AA0B 2M07A 1ORMA 2R4NA 3POXA 3K19A 3DA4A 4GHBA 2GE4A 2QTKA 4G75A 1ZHYA 3A0BO 4FRXA 4LSIA 4RLCA 2R89A 3A2SX 1GFOA 3QRCA 5DL8A 4O49A 4E1TA 4PJ0O 4GCSA 4K3BA 2J1NA 3DA3A 2KXPB 2Y0KA 1H6S1 4GCQA 4JFBA 2R4PA 2W80C 4N74A 3AAAA 4C00A 1HXUA 1OSMA 3AA7A 3T24A 3VZUX 4D65A 5JDPA 2AXTO 5G39A 5B5EO 2IWVA 5EE2A 5G38A 3NSGA 2XTQA
chains in the Genus database with same CATH topology
7PRNA 2XE1A 2KZ7A 3AAEA 4AKRA 4FESA 4KR8A 4RLBA 3AA0A 3VE2A 1PRNA 4AYNA 4O4UA 4JCHA 5D5DA 4LSEA 3SZDA 4BUMX 2O4VA 2PORA 5ADXK 4FT6A 1OPFA 3UAQA 3FYXA 3VE1A 5ADXL 1GFPA 4FZLA 2KXPA 1MM4A 5DL7A 3WI4A 1ZHTA 4FRTA 2N2MA 2KDYA 4GCPA 2ZLDA 3SY9A 4AZLA 3POUA 4FUVA 2M06A 1YS5A 3AA6A 3O0EA 2FGQX 2XG6A 4N58A 3LK3B 2Y0HA 4FOZA 2XE2A 4D64A 4F4BA 4XNKA 5DL6A 3T0SA 1QJPA 3HOLA 1QJ8A 3LK42 2K4TA 4FSPA 1ZHWA 4FMSA 4D5UA 2JMMA 4O3XB 4FSOA 1GFNA 3HOEA 4AYID 2YPVA 5IYUA 3KVDD 2Y7SA 4RJXA 3JTYA 3G7GA 1Q9GA 4KRAA 3PRNA 1IZNB 4GF4A 4Z3TA 3VY8X 2XE3A 2XTRA 4XNLA 1ZHZA 2LFUA 2Y2XA 1ZHXA 2MNHA 5GV0A 3LK3A 3UPGA 1Q9FA 2J4UP 5DL5A 4QQ1A 3LK2B 5AFUK 2MHLA 3TZGA 3SZVA 4AYDC 3VZWX 3WI5A 2ODJA 3VZTX 2W81C 1P4TA 4AFKA 3SYSA 5AFUL 3AAAB 4N59A 4AUIA 1BXWA 4O3ZA 4O3YA 6PRNA 1IZNA 4FZNA 1MM5A 4U9CA 4AYMC 1HXXA 1PHOA 2YNKA 3HW9A 8PRNA 2ZFGA 2KZ7B 1QJ9A 3T20A 2N2LA 5FVNA 2KC0A 3AA1B 4PUXA 3PQSA 5PRNA 3SYBA 4AYEC 2PRNA 4RL9A 3LK2A 5G26A 2F1TA 1HXTA 5T5FA 4C69X 1GFMA 1GFQA 2X27X 4LSHA 2FGRA 3POQA 1BT9A 2K0LA 3LK41 3PQUA 3RBHA 2F1VA 4B61A 1E54A 4RJWA 4G76A 3C5OA 3PORA 3AA6B 3VY9X 1BH3A 2OMFA 2Y0LA 3AA7B 4KR4A 4E1SA 1THQA 4O3WA 3EMNX 1MPFA 2LHFA 4FZMA 3GP6A 3AA1A 3QRAA 3SY7A 2XE5A 4LSFA 3V8UA 4AKMA 2XMXA 3UU2A 3HWBA 3AAEB 2ERVA 4AKRB 4O4XA 3AA0B 2M07A 1ORMA 3POXA 3K19A 3DA4A 4GHBA 2GE4A 2QTKA 4G75A 1ZHYA 4FRXA 4LSIA 4RLCA 5DL8A 3T24A 3A2SX 1GFOA 3QRCA 4O49A 4E1TA 4GCSA 2J1NA 3DA3A 2KXPB 2Y0KA 1H6S1 4GCQA 4JFBA 2W80C 3AAAA 1HXUA 1OSMA 3AA7A 3VZUX 4D65A 5JDPA 5EE2A 1G90A 3NSGA 2XTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 7PRN A;  2XE1 A;  4KR8 A;  1PRN A;  4LSE A;  3SZD A;  4BUM X;  2O4V A;  2POR A;  4FT6 A;  1OPF A;  3FYX A;  1GFP A;  5DL7 A;  3WI4 A;  4FRT A;  4GCP A;  2ZLD A;  3SY9 A;  3POU A;  3O0E A;  2FGQ X;  2XG6 A;  2Y0H A;  4FOZ A;  2XE2 A;  4D64 A;  5DL6 A;  3T0S A;  2K4T A;  4FSP A;  4FMS A;  4D5U A;  4FSO A;  1GFN A;  4RJX A;  3JTY A;  4KRA A;  3PRN A;  3VY8 X;  2XE3 A;  2Y2X A;  3UPG A;  2J4U P;  5DL5 A;  3SZV A;  3VZW X;  3WI5 A;  2ODJ A;  3VZT X;  3SYS A;  4AUI A;  6PRN A;  8PRN A;  1HXX A;  1PHO A;  3HW9 A;  2ZFG A;  3T20 A;  5FVN A;  5PRN A;  3SYB A;  2PRN A;  1HXT A;  4C69 X;  1GFM A;  1GFQ A;  4LSH A;  2FGR A;  3POQ A;  1BT9 A;  1E54 A;  4RJW A;  3POR A;  3VY9 X;  1BH3 A;  2OMF A;  4KR4 A;  2Y0L A;  3EMN X;  1MPF A;  3SY7 A;  2XE5 A;  4LSF A;  3UU2 A;  3HWB A;  3POX A;  3K19 A;  2QTK A;  3T24 A;  4FRX A;  4LSI A;  5DL8 A;  3A2S X;  1GFO A;  4GCS A;  2J1N A;  4GCQ A;  2Y0K A;  1H6S 1;  4JFB A;  1OSM A;  1HXU A;  3VZU X;  4D65 A;  5JDP A;  3NSG A; 
#chains in the Genus database with same CATH topology
 7PRN A;  2XE1 A;  2KZ7 A;  3AAE A;  3DZM A;  3WU2 O;  4FES A;  4AKR A;  4KR8 A;  4RLB A;  3AA0 A;  3VE2 A;  1PRN A;  4AYN A;  4O4U A;  4JCH A;  5D5D A;  4LSE A;  3SZD A;  4BUM X;  2O4V A;  2POR A;  5ADX K;  4FT6 A;  1OPF A;  3UAQ A;  3FYX A;  1T16 A;  2WVP A;  3VE1 A;  5ADX L;  1GFP A;  4FZL A;  2KXP A;  1MM4 A;  5DL7 A;  3WI4 A;  1ZHT A;  4FRT A;  2N2M A;  5B66 O;  4UB6 O;  2KDY A;  4GCP A;  2ZLD A;  3SY9 A;  4AZL A;  3POU A;  4FUV A;  2M06 A;  1YS5 A;  3PGS A;  3AA6 A;  3O0E A;  2FGQ X;  2XG6 A;  4N58 A;  3LK3 B;  2Y0H A;  4FOZ A;  2XE2 A;  3BRZ A;  4D64 A;  4F4B A;  3KZI O;  3BS0 A;  4XNK A;  5DL6 A;  3T0S A;  1QJP A;  3HOL A;  1QJ8 A;  3LK4 2;  2K4T A;  3PGR A;  1ZHW A;  4FMS A;  4FSP A;  2WJQ A;  2JMM A;  3A0H O;  4CTD A;  4O3X B;  4D5U A;  4FSO A;  1GFN A;  3HOE A;  4AYI D;  2YPV A;  5IYU A;  3KVD D;  2F1C X;  2Y7S A;  4RJX A;  5KAI O;  3JTY A;  3DWO X;  3G7G A;  1Q9G A;  4FQE A;  2WJR A;  3PRN A;  1IZN B;  4GF4 A;  4KRA A;  4Z3T A;  3VY8 X;  2XE3 A;  2XTR A;  4XNL A;  1ZHZ A;  2LFU A;  4PR7 A;  2Y2X A;  1ZHX A;  5G3A A;  5KAF O;  2MNH A;  3PF1 A;  3LK3 A;  5GV0 A;  3UPG A;  1Q9F A;  2J4U P;  1T1L A;  5DL5 A;  5H2F O;  4QQ1 A;  3LK2 B;  4UB8 O;  2MHL A;  5AFU K;  2IWW A;  3TZG A;  3SZV A;  3PGU A;  4AYD C;  3VZW X;  3WI5 A;  2ODJ A;  3VZT X;  2W81 C;  1P4T A;  4AFK A;  3SYS A;  5AFU L;  3AAA B;  4N59 A;  4N75 A;  4AUI A;  1BXW A;  4O3Z A;  5E79 O;  1G90 A;  4O3Y A;  6PRN A;  2R4L A;  5TIS O;  1IZN A;  2R88 A;  4FZN A;  1MM5 A;  3BRY A;  4U9C A;  1HXX A;  1PHO A;  2YNK A;  2R4O A;  3HW9 A;  4AYM C;  8PRN A;  2ZFG A;  2KZ7 B;  1QJ9 A;  3T20 A;  2N2L A;  5FVN A;  2KC0 A;  4C4V B;  3AA1 B;  4PUX A;  3PQS A;  5PRN A;  3SYB A;  1S5L O;  4AYE C;  2PRN A;  4RL9 A;  2JQY A;  3LK2 A;  5G26 A;  2F1T A;  1HXT A;  5T5F A;  4IL6 O;  4C69 X;  5GTH O;  1GFM A;  1GFQ A;  2X27 X;  4LSH A;  2FGR A;  3POQ A;  2R8A A;  3NJT A;  1BT9 A;  2K0L A;  3LK4 1;  3PQU A;  3RBH A;  2F1V A;  4B61 A;  1E54 A;  3DWN A;  4G76 A;  4RJW A;  3C5O A;  3POR A;  3AA6 B;  3VY9 X;  4K3C A;  2X9K A;  1BH3 A;  2OMF A;  2Y0L A;  3AA7 B;  4KR4 A;  4E1S A;  1THQ A;  4O3W A;  3EMN X;  1MPF A;  2LHF A;  4FZM A;  3GP6 A;  4C4V A;  3AA1 A;  3QRA A;  3SY7 A;  2XE5 A;  4LSF A;  3V8U A;  4AKM A;  5GTI O;  3JCU O;  2XMX A;  3UU2 A;  3HWB A;  3AAE B;  2ERV A;  4AKR B;  4O4X A;  3AA0 B;  2M07 A;  1ORM A;  2R4N A;  3POX A;  3K19 A;  3DA4 A;  4GHB A;  2GE4 A;  2QTK A;  4G75 A;  1ZHY A;  3A0B O;  4FRX A;  4LSI A;  4RLC A;  2R89 A;  3A2S X;  1GFO A;  3QRC A;  5DL8 A;  4O49 A;  4E1T A;  4PJ0 O;  4GCS A;  4K3B A;  2J1N A;  3DA3 A;  2KXP B;  2Y0K A;  1H6S 1;  4GCQ A;  4JFB A;  2R4P A;  2W80 C;  4N74 A;  3AAA A;  4C00 A;  1HXU A;  1OSM A;  3AA7 A;  3T24 A;  3VZU X;  4D65 A;  5JDP A;  2AXT O;  5G39 A;  5B5E O;  2IWV A;  5EE2 A;  5G38 A;  3NSG A;  2XTQ A; 
#chains in the Genus database with same CATH homology
 7PRN A;  2XE1 A;  2KZ7 A;  3AAE A;  4AKR A;  4FES A;  4KR8 A;  4RLB A;  3AA0 A;  3VE2 A;  1PRN A;  4AYN A;  4O4U A;  4JCH A;  5D5D A;  4LSE A;  3SZD A;  4BUM X;  2O4V A;  2POR A;  5ADX K;  4FT6 A;  1OPF A;  3UAQ A;  3FYX A;  3VE1 A;  5ADX L;  1GFP A;  4FZL A;  2KXP A;  1MM4 A;  5DL7 A;  3WI4 A;  1ZHT A;  4FRT A;  2N2M A;  2KDY A;  4GCP A;  2ZLD A;  3SY9 A;  4AZL A;  3POU A;  4FUV A;  2M06 A;  1YS5 A;  3AA6 A;  3O0E A;  2FGQ X;  2XG6 A;  4N58 A;  3LK3 B;  2Y0H A;  4FOZ A;  2XE2 A;  4D64 A;  4F4B A;  4XNK A;  5DL6 A;  3T0S A;  1QJP A;  3HOL A;  1QJ8 A;  3LK4 2;  2K4T A;  4FSP A;  1ZHW A;  4FMS A;  4D5U A;  2JMM A;  4O3X B;  4FSO A;  1GFN A;  3HOE A;  4AYI D;  2YPV A;  5IYU A;  3KVD D;  2Y7S A;  4RJX A;  3JTY A;  3G7G A;  1Q9G A;  4KRA A;  3PRN A;  1IZN B;  4GF4 A;  4Z3T A;  3VY8 X;  2XE3 A;  2XTR A;  4XNL A;  1ZHZ A;  2LFU A;  2Y2X A;  1ZHX A;  2MNH A;  5GV0 A;  3LK3 A;  3UPG A;  1Q9F A;  2J4U P;  5DL5 A;  4QQ1 A;  3LK2 B;  5AFU K;  2MHL A;  3TZG A;  3SZV A;  4AYD C;  3VZW X;  3WI5 A;  2ODJ A;  3VZT X;  2W81 C;  1P4T A;  4AFK A;  3SYS A;  5AFU L;  3AAA B;  4N59 A;  4AUI A;  1BXW A;  4O3Z A;  4O3Y A;  6PRN A;  1IZN A;  4FZN A;  1MM5 A;  4U9C A;  4AYM C;  1HXX A;  1PHO A;  2YNK A;  3HW9 A;  8PRN A;  2ZFG A;  2KZ7 B;  1QJ9 A;  3T20 A;  2N2L A;  5FVN A;  2KC0 A;  3AA1 B;  4PUX A;  3PQS A;  5PRN A;  3SYB A;  4AYE C;  2PRN A;  4RL9 A;  3LK2 A;  5G26 A;  2F1T A;  1HXT A;  5T5F A;  4C69 X;  1GFM A;  1GFQ A;  2X27 X;  4LSH A;  2FGR A;  3POQ A;  1BT9 A;  2K0L A;  3LK4 1;  3PQU A;  3RBH A;  2F1V A;  4B61 A;  1E54 A;  4RJW A;  4G76 A;  3C5O A;  3POR A;  3AA6 B;  3VY9 X;  1BH3 A;  2OMF A;  2Y0L A;  3AA7 B;  4KR4 A;  4E1S A;  1THQ A;  4O3W A;  3EMN X;  1MPF A;  2LHF A;  4FZM A;  3GP6 A;  3AA1 A;  3QRA A;  3SY7 A;  2XE5 A;  4LSF A;  3V8U A;  4AKM A;  2XMX A;  3UU2 A;  3HWB A;  3AAE B;  2ERV A;  4AKR B;  4O4X A;  3AA0 B;  2M07 A;  1ORM A;  3POX A;  3K19 A;  3DA4 A;  4GHB A;  2GE4 A;  2QTK A;  4G75 A;  1ZHY A;  4FRX A;  4LSI A;  4RLC A;  5DL8 A;  3T24 A;  3A2S X;  1GFO A;  3QRC A;  4O49 A;  4E1T A;  4GCS A;  2J1N A;  3DA3 A;  2KXP B;  2Y0K A;  1H6S 1;  4GCQ A;  4JFB A;  2W80 C;  3AAA A;  1HXU A;  1OSM A;  3AA7 A;  3VZU X;  4D65 A;  5JDP A;  5EE2 A;  1G90 A;  3NSG A;  2XTQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...