4FSPA

Crystal structure of pseudomonas aeruginosa occk11 (opdr)
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
399
structure length
364
Chain Sequence
LYFQGLEEGFLEDSRASLALRNFYMNRDFRKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVRLDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSSDLALFNRNRRFAGAAQADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADSLESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKGADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLYLTYELPLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
molecule keywords Probable porin
total genus 100
structure length 364
sequence length 399
ec nomenclature
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fspA01
2PRNA 2O4VA 5FVNA 5DL8A 3POXA 3UU2A 4AUIA 4D5UA 1BH3A 2J1NA 3T24A 5JDPA 3SYBA 4LSFA 2ZLDA 3SZDA 1GFNA 3JTYA 1HXXA 1PRNA 3K19A 4D64A 7PRNA 3VZWX 2K4TA 3T20A 2J4UP 3VY9X 2XE5A 2XE2A 4LSIA 2FGQX 2PORA 1HXTA 3POQA 3PORA 2ZFGA 4FSPA 4GCSA 5DL7A 2ODJA 2OMFA 3A2SX 3VZTX 2XG6A 2QTKA 4KR4A 1GFOA 4RJWA 3FYXA 4LSEA 2Y0LA 4JFBA 1GFQA 1OPFA 6PRNA 4KR8A 4KRAA 3POUA 4FRXA 1GFMA 2XE1A 3SY7A 4GCQA 2FGRA 1MPFA 3VY8X 3WI4A 2Y0HA 3EMNX 1GFPA 3PRNA 4FMSA 1E54A 3SZVA 1PHOA 4RJXA 3SY9A 2Y2XA 4C69X 1OSMA 3O0EA 4FSOA 2Y0KA 2XE3A 8PRNA 4FRTA 5DL5A 4BUMX 3NSGA 3HWBA 1HXUA 5DL6A 4FOZA 5PRNA 3SYSA 3HW9A 4D65A 3VZUX 4GCPA 3UPGA 1BT9A 1H6S1 4FT6A 3T0SA 3WI5A 4LSHA
chains in the Genus database with same CATH superfamily
2AXTO 2PRNA 3BRZA 4O3YA 2O4VA 2WJQA 3UAQA 3DZMA 5FVNA 4UB6O 3POXA 5DL8A 3UU2A 2MNHA 2ERVA 2KC0A 2KZ7B 2GE4A 1BH3A 2J1NA 2K0LA 2KXPB 2R4PA 3C5OA 3T24A 1BXWA 4LSFA 4UB8O 2ZLDA 3SYBA 5AFUK 2W80C 4FZNA 4O49A 3AA1B 1YS5A 3AA7B 4G75A 1GFNA 1ZHTA 3SZDA 1ZHWA 5G38A 3JTYA 1THQA 2XTQA 2F1CX 4AKRB 1HXXA 3LK2B 2JMMA 3PQSA 1PRNA 3AA6B 4B61A 4GF4A 3K19A 1S5LO 3LK41 1QJ8A 4D64A 3HOLA 2JQYA 1G90A 3JCUO 3KZIO 7PRNA 3BS0A 3VZWX 1QJ9A 3PGSA 4FESA 4K3BA 2K4TA 3AAEB 4PJ0O 1MM4A 3GP6A 3LK3B 4RLBA 2LHFA 2N2MA 5G3AA 4Z3TA 2J4UP 4FZLA 3VY9X 1QJPA 2M07A 1ZHXA 2WVPA 2XMXA 5D5DA 3VE2A 3A0HO 5IYUA 3PQUA 4O3WA 2XE5A 1IZNB 2XE2A 3PF1A 5ADXK 4LSIA 2FGQX 2PORA 4AZLA 1HXTA 4N58A 3POQA 4GHBA 1ZHZA 3PORA 2IWVA 2ZFGA 5KAIO 4FSPA 4GCSA 5H2FO 4AYID 5DL7A 1T1LA 2R4OA 4RL9A 4JCHA 4C4VB 3AA0B 4PR7A 2ODJA 5JDPA 2F1TA 5B5EO 4N75A 2OMFA 4AYEC 3A2SX 1Q9GA 3DA3A 3VZTX 2XG6A 2R4LA 2XTRA 4E1TA 2QTKA 4KR4A 4N59A 2M06A 3QRAA 4XNLA 5ADXL 1GFOA 4O4UA 2MHLA 3FYXA 3PGRA 4LSEA 4RJWA 2KXPA 3DA4A 3QRCA 4U9CA 2Y0LA 2KZ7A 4JFBA 4PUXA 4N74A 3LK42 1GFQA 1OPFA 2R89A 3AAEA 3RBHA 3V8UA 6PRNA 4O3XB 5KAFO 5B66O 2Y7SA 1Q9FA 2R8AA 4KR8A 4KRAA 4G76A 3POUA 4FRXA 4K3CA 1GFMA 2X27X 2XE1A 4QQ1A 3SY7A 3AA6A 4GCQA 5EE2A 2FGRA 2YPVA 1MPFA 3TZGA 1MM5A 3VY8X 3G7GA 4RLCA 3BRYA 5T5FA 3AA7A 5TISO 3WI4A 3WU2O 1P4TA 3A0BO 5G39A 2Y0HA 5GTHO 5AFUL 4IL6O 2LFUA 4C4VA 3EMNX 2W81C 1GFPA 3PRNA 4FMSA 1E54A 3HOEA 3SZVA 1ZHYA 3DWNA 1PHOA 2R4NA 2X9KA 2IWWA 4C00A 3AAAB 4FZMA 3DWOX 4CTDA 4RJXA 1T16A 3VE1A 4F4BA 4O4XA 4XNKA 2Y2XA 3SY9A 1OSMA 4C69X 3O0EA 4FSOA 4AKMA 2Y0KA 3LK3A 2XE3A 4FQEA 4E1SA 8PRNA 3AAAA 4FRTA 5DL5A 4AYDC 4BUMX 3KVDD 3NSGA 3HWBA 1HXUA 5DL6A 2YNKA 4FOZA 5PRNA 3SYSA 2F1VA 5GV0A 2WJRA 3HW9A 4AYMC 3T20A 5E79O 3AA0A 4FUVA 3LK2A 2R88A 5GTIO 4AKRA 3VZUX 4AFKA 3PGUA 4GCPA 4D65A 3UPGA 2N2LA 4AYNA 3AA1A 4AUIA 4O3ZA 4D5UA 1ORMA 1IZNA 1BT9A 3NJTA 5G26A 1H6S1 4FT6A 3T0SA 2KDYA 3WI5A 4LSHA
chains in the Genus database with same CATH topology
2PRNA 4O3YA 2O4VA 3UAQA 5FVNA 3POXA 5DL8A 3UU2A 2MNHA 2ERVA 2KC0A 2KZ7B 2GE4A 1BH3A 2J1NA 2K0LA 2KXPB 3C5OA 3T24A 4AUIA 1BXWA 4LSFA 3SYBA 2ZLDA 5AFUK 2W80C 4FZNA 4O49A 3AA1B 1YS5A 3AA7B 4G75A 1GFNA 1ZHTA 3SZDA 1ZHWA 3JTYA 1THQA 2XTQA 4AKRB 1HXXA 3LK2B 2JMMA 3PQSA 1PRNA 3AA6B 4B61A 4GF4A 3K19A 3LK41 1QJ8A 4D64A 3HOLA 1G90A 7PRNA 3VZWX 1QJ9A 4FESA 4RLBA 2K4TA 3AAEB 3T20A 1MM4A 3GP6A 3LK3B 4Z3TA 2LHFA 2N2MA 2J4UP 4FZLA 3VY9X 1QJPA 2M07A 1ZHXA 2XMXA 3VE2A 5D5DA 5IYUA 3PQUA 4O3WA 2XE5A 1IZNB 2XE2A 5ADXK 4LSIA 2FGQX 2PORA 4AZLA 1HXTA 4N58A 3POQA 4GHBA 1ZHZA 3PORA 2ZFGA 4FSPA 4GCSA 4AYID 5DL7A 4RL9A 4JCHA 3AA0B 2ODJA 5JDPA 2F1TA 2OMFA 4AYEC 3A2SX 1Q9GA 3DA3A 3VZTX 2XG6A 2XTRA 4E1TA 2QTKA 4KR4A 4N59A 2M06A 3QRAA 4XNLA 5ADXL 1GFOA 4O4UA 2MHLA 3FYXA 4LSEA 4RJWA 2KXPA 3DA4A 3QRCA 4U9CA 2Y0LA 2KZ7A 4JFBA 4PUXA 3LK42 1GFQA 1OPFA 3AAEA 3V8UA 3RBHA 6PRNA 4O3XB 2Y7SA 1Q9FA 4KR8A 4KRAA 4G76A 3POUA 4FRXA 1GFMA 2X27X 2XE1A 4QQ1A 3SY7A 3AA6A 4GCQA 5EE2A 2FGRA 2YPVA 1MPFA 3TZGA 1MM5A 3VY8X 3G7GA 4RLCA 5T5FA 3AA7A 3WI4A 1P4TA 2Y0HA 5AFUL 2LFUA 3EMNX 2W81C 1GFPA 3PRNA 4FMSA 1E54A 3HOEA 3SZVA 1ZHYA 1PHOA 3AAAB 4FZMA 4RJXA 3VE1A 4F4BA 4O4XA 4XNKA 2Y2XA 3SY9A 1OSMA 4C69X 3O0EA 4FSOA 4AKMA 2Y0KA 3LK3A 2XE3A 4E1SA 8PRNA 3AAAA 4FRTA 5DL5A 4AYDC 4BUMX 3KVDD 3NSGA 3HWBA 1HXUA 5DL6A 2YNKA 4FOZA 5PRNA 3SYSA 2F1VA 5GV0A 3HW9A 4AYMC 3AA0A 4FUVA 3LK2A 4D65A 4AKRA 3VZUX 4AFKA 4GCPA 3UPGA 2N2LA 4AYNA 3AA1A 4O3ZA 4D5UA 1ORMA 1IZNA 1BT9A 5G26A 1H6S1 4FT6A 3T0SA 2KDYA 3WI5A 4LSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRN A;  2O4V A;  5FVN A;  5DL8 A;  3POX A;  3UU2 A;  4AUI A;  4D5U A;  1BH3 A;  2J1N A;  3T24 A;  5JDP A;  3SYB A;  4LSF A;  2ZLD A;  3SZD A;  1GFN A;  3JTY A;  1HXX A;  1PRN A;  3K19 A;  4D64 A;  7PRN A;  3VZW X;  2K4T A;  3T20 A;  2J4U P;  3VY9 X;  2XE5 A;  2XE2 A;  4LSI A;  2FGQ X;  2POR A;  1HXT A;  3POQ A;  3POR A;  2ZFG A;  4FSP A;  4GCS A;  5DL7 A;  2ODJ A;  2OMF A;  3A2S X;  3VZT X;  2XG6 A;  2QTK A;  4KR4 A;  1GFO A;  4RJW A;  3FYX A;  4LSE A;  2Y0L A;  4JFB A;  1GFQ A;  1OPF A;  6PRN A;  4KR8 A;  4KRA A;  3POU A;  4FRX A;  1GFM A;  2XE1 A;  3SY7 A;  4GCQ A;  2FGR A;  1MPF A;  3VY8 X;  3WI4 A;  2Y0H A;  3EMN X;  1GFP A;  3PRN A;  4FMS A;  1E54 A;  3SZV A;  1PHO A;  4RJX A;  3SY9 A;  2Y2X A;  4C69 X;  1OSM A;  3O0E A;  4FSO A;  2Y0K A;  2XE3 A;  8PRN A;  4FRT A;  5DL5 A;  4BUM X;  3NSG A;  3HWB A;  1HXU A;  5DL6 A;  4FOZ A;  5PRN A;  3SYS A;  3HW9 A;  4D65 A;  3VZU X;  4GCP A;  3UPG A;  1BT9 A;  1H6S 1;  4FT6 A;  3T0S A;  3WI5 A;  4LSH A; 
#chains in the Genus database with same CATH topology
 2AXT O;  2PRN A;  3BRZ A;  4O3Y A;  2O4V A;  2WJQ A;  3UAQ A;  3DZM A;  5FVN A;  4UB6 O;  3POX A;  5DL8 A;  3UU2 A;  2MNH A;  2ERV A;  2KC0 A;  2KZ7 B;  2GE4 A;  1BH3 A;  2J1N A;  2K0L A;  2KXP B;  2R4P A;  3C5O A;  3T24 A;  1BXW A;  4LSF A;  4UB8 O;  2ZLD A;  3SYB A;  5AFU K;  2W80 C;  4FZN A;  4O49 A;  3AA1 B;  1YS5 A;  3AA7 B;  4G75 A;  1GFN A;  1ZHT A;  3SZD A;  1ZHW A;  5G38 A;  3JTY A;  1THQ A;  2XTQ A;  2F1C X;  4AKR B;  1HXX A;  3LK2 B;  2JMM A;  3PQS A;  1PRN A;  3AA6 B;  4B61 A;  4GF4 A;  3K19 A;  1S5L O;  3LK4 1;  1QJ8 A;  4D64 A;  3HOL A;  2JQY A;  1G90 A;  3JCU O;  3KZI O;  7PRN A;  3BS0 A;  3VZW X;  1QJ9 A;  3PGS A;  4FES A;  4K3B A;  2K4T A;  3AAE B;  4PJ0 O;  1MM4 A;  3GP6 A;  3LK3 B;  4RLB A;  2LHF A;  2N2M A;  5G3A A;  4Z3T A;  2J4U P;  4FZL A;  3VY9 X;  1QJP A;  2M07 A;  1ZHX A;  2WVP A;  2XMX A;  5D5D A;  3VE2 A;  3A0H O;  5IYU A;  3PQU A;  4O3W A;  2XE5 A;  1IZN B;  2XE2 A;  3PF1 A;  5ADX K;  4LSI A;  2FGQ X;  2POR A;  4AZL A;  1HXT A;  4N58 A;  3POQ A;  4GHB A;  1ZHZ A;  3POR A;  2IWV A;  2ZFG A;  5KAI O;  4FSP A;  4GCS A;  5H2F O;  4AYI D;  5DL7 A;  1T1L A;  2R4O A;  4RL9 A;  4JCH A;  4C4V B;  3AA0 B;  4PR7 A;  2ODJ A;  5JDP A;  2F1T A;  5B5E O;  4N75 A;  2OMF A;  4AYE C;  3A2S X;  1Q9G A;  3DA3 A;  3VZT X;  2XG6 A;  2R4L A;  2XTR A;  4E1T A;  2QTK A;  4KR4 A;  4N59 A;  2M06 A;  3QRA A;  4XNL A;  5ADX L;  1GFO A;  4O4U A;  2MHL A;  3FYX A;  3PGR A;  4LSE A;  4RJW A;  2KXP A;  3DA4 A;  3QRC A;  4U9C A;  2Y0L A;  2KZ7 A;  4JFB A;  4PUX A;  4N74 A;  3LK4 2;  1GFQ A;  1OPF A;  2R89 A;  3AAE A;  3RBH A;  3V8U A;  6PRN A;  4O3X B;  5KAF O;  5B66 O;  2Y7S A;  1Q9F A;  2R8A A;  4KR8 A;  4KRA A;  4G76 A;  3POU A;  4FRX A;  4K3C A;  1GFM A;  2X27 X;  2XE1 A;  4QQ1 A;  3SY7 A;  3AA6 A;  4GCQ A;  5EE2 A;  2FGR A;  2YPV A;  1MPF A;  3TZG A;  1MM5 A;  3VY8 X;  3G7G A;  4RLC A;  3BRY A;  5T5F A;  3AA7 A;  5TIS O;  3WI4 A;  3WU2 O;  1P4T A;  3A0B O;  5G39 A;  2Y0H A;  5GTH O;  5AFU L;  4IL6 O;  2LFU A;  4C4V A;  3EMN X;  2W81 C;  1GFP A;  3PRN A;  4FMS A;  1E54 A;  3HOE A;  3SZV A;  1ZHY A;  3DWN A;  1PHO A;  2R4N A;  2X9K A;  2IWW A;  4C00 A;  3AAA B;  4FZM A;  3DWO X;  4CTD A;  4RJX A;  1T16 A;  3VE1 A;  4F4B A;  4O4X A;  4XNK A;  2Y2X A;  3SY9 A;  1OSM A;  4C69 X;  3O0E A;  4FSO A;  4AKM A;  2Y0K A;  3LK3 A;  2XE3 A;  4FQE A;  4E1S A;  8PRN A;  3AAA A;  4FRT A;  5DL5 A;  4AYD C;  4BUM X;  3KVD D;  3NSG A;  3HWB A;  1HXU A;  5DL6 A;  2YNK A;  4FOZ A;  5PRN A;  3SYS A;  2F1V A;  5GV0 A;  2WJR A;  3HW9 A;  4AYM C;  3T20 A;  5E79 O;  3AA0 A;  4FUV A;  3LK2 A;  2R88 A;  5GTI O;  4AKR A;  3VZU X;  4AFK A;  3PGU A;  4GCP A;  4D65 A;  3UPG A;  2N2L A;  4AYN A;  3AA1 A;  4AUI A;  4O3Z A;  4D5U A;  1ORM A;  1IZN A;  1BT9 A;  3NJT A;  5G26 A;  1H6S 1;  4FT6 A;  3T0S A;  2KDY A;  3WI5 A;  4LSH A; 
#chains in the Genus database with same CATH homology
 2PRN A;  4O3Y A;  2O4V A;  3UAQ A;  5FVN A;  3POX A;  5DL8 A;  3UU2 A;  2MNH A;  2ERV A;  2KC0 A;  2KZ7 B;  2GE4 A;  1BH3 A;  2J1N A;  2K0L A;  2KXP B;  3C5O A;  3T24 A;  4AUI A;  1BXW A;  4LSF A;  3SYB A;  2ZLD A;  5AFU K;  2W80 C;  4FZN A;  4O49 A;  3AA1 B;  1YS5 A;  3AA7 B;  4G75 A;  1GFN A;  1ZHT A;  3SZD A;  1ZHW A;  3JTY A;  1THQ A;  2XTQ A;  4AKR B;  1HXX A;  3LK2 B;  2JMM A;  3PQS A;  1PRN A;  3AA6 B;  4B61 A;  4GF4 A;  3K19 A;  3LK4 1;  1QJ8 A;  4D64 A;  3HOL A;  1G90 A;  7PRN A;  3VZW X;  1QJ9 A;  4FES A;  4RLB A;  2K4T A;  3AAE B;  3T20 A;  1MM4 A;  3GP6 A;  3LK3 B;  4Z3T A;  2LHF A;  2N2M A;  2J4U P;  4FZL A;  3VY9 X;  1QJP A;  2M07 A;  1ZHX A;  2XMX A;  3VE2 A;  5D5D A;  5IYU A;  3PQU A;  4O3W A;  2XE5 A;  1IZN B;  2XE2 A;  5ADX K;  4LSI A;  2FGQ X;  2POR A;  4AZL A;  1HXT A;  4N58 A;  3POQ A;  4GHB A;  1ZHZ A;  3POR A;  2ZFG A;  4FSP A;  4GCS A;  4AYI D;  5DL7 A;  4RL9 A;  4JCH A;  3AA0 B;  2ODJ A;  5JDP A;  2F1T A;  2OMF A;  4AYE C;  3A2S X;  1Q9G A;  3DA3 A;  3VZT X;  2XG6 A;  2XTR A;  4E1T A;  2QTK A;  4KR4 A;  4N59 A;  2M06 A;  3QRA A;  4XNL A;  5ADX L;  1GFO A;  4O4U A;  2MHL A;  3FYX A;  4LSE A;  4RJW A;  2KXP A;  3DA4 A;  3QRC A;  4U9C A;  2Y0L A;  2KZ7 A;  4JFB A;  4PUX A;  3LK4 2;  1GFQ A;  1OPF A;  3AAE A;  3V8U A;  3RBH A;  6PRN A;  4O3X B;  2Y7S A;  1Q9F A;  4KR8 A;  4KRA A;  4G76 A;  3POU A;  4FRX A;  1GFM A;  2X27 X;  2XE1 A;  4QQ1 A;  3SY7 A;  3AA6 A;  4GCQ A;  5EE2 A;  2FGR A;  2YPV A;  1MPF A;  3TZG A;  1MM5 A;  3VY8 X;  3G7G A;  4RLC A;  5T5F A;  3AA7 A;  3WI4 A;  1P4T A;  2Y0H A;  5AFU L;  2LFU A;  3EMN X;  2W81 C;  1GFP A;  3PRN A;  4FMS A;  1E54 A;  3HOE A;  3SZV A;  1ZHY A;  1PHO A;  3AAA B;  4FZM A;  4RJX A;  3VE1 A;  4F4B A;  4O4X A;  4XNK A;  2Y2X A;  3SY9 A;  1OSM A;  4C69 X;  3O0E A;  4FSO A;  4AKM A;  2Y0K A;  3LK3 A;  2XE3 A;  4E1S A;  8PRN A;  3AAA A;  4FRT A;  5DL5 A;  4AYD C;  4BUM X;  3KVD D;  3NSG A;  3HWB A;  1HXU A;  5DL6 A;  2YNK A;  4FOZ A;  5PRN A;  3SYS A;  2F1V A;  5GV0 A;  3HW9 A;  4AYM C;  3AA0 A;  4FUV A;  3LK2 A;  4D65 A;  4AKR A;  3VZU X;  4AFK A;  4GCP A;  3UPG A;  2N2L A;  4AYN A;  3AA1 A;  4O3Z A;  4D5U A;  1ORM A;  1IZN A;  1BT9 A;  5G26 A;  1H6S 1;  4FT6 A;  3T0S A;  2KDY A;  3WI5 A;  4LSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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