4FT6A

Crystal structure of pseudomonas aeruginosa occk9 (opdg)
Total Genus 106
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
387
structure length
387
Chain Sequence
b'EGFIEDASVSLGLRNLYFNRDFRQPGAAQSKQEEWAQGFLLQAKSGYTQGTLGLGVELIGQLGLKLDSSPDRAGSGLLPRHADGRAADDYARLGVAPKLKLSNTELKLGELLPELPILLRNDGRLLPQTFQGGMLTSREIAGLTLHGGQMRSLSQRNSSDHQDLSVDGRGGAFSDRFDYLGAEYRFNAERSQVGLWQARLQDIYRQDYYSLSHKQSFGGWRLGASVGLFDTRDEGAAKLGELENRALTGFFSATRGGHSLGAGYQRMYGDDGMLYIAGTSTPLVNDIQVRNFTSAGERSWQLRYDYDFVALGIPGLTAMARYASGAHARTKAMDDGRAWERDVDVAYVIQSGPLKNLGLRWRNAMLRSNHAADVDENRLILSYSLPL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable porin
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 106
structure length 387
sequence length 387
ec nomenclature
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4ft6A01
3UU2A 3T0SA 1GFNA 3HWBA 3T24A 4FMSA 4KRAA 3VZUX 3HW9A 3POQA 3EMNX 1HXUA 1HXXA 4FSPA 6PRNA 4GCPA 1OPFA 4RJXA 2PRNA 5DL5A 1GFPA 1PRNA 2K4TA 4FT6A 4KR8A 4BUMX 3T20A 1BT9A 4KR4A 2J1NA 1PHOA 4C69X 4FSOA 1HXTA 3O0EA 3POXA 5JDPA 4GCSA 1GFQA 3VZWX 8PRNA 2ZLDA 4D64A 4AUIA 1GFMA 5DL8A 2XE5A 2XE2A 3UPGA 4LSEA 7PRNA 3FYXA 2XG6A 3WI5A 2ZFGA 3NSGA 2Y2XA 4D5UA 4D65A 2XE3A 2Y0LA 1OSMA 3SY9A 3SZDA 5DL6A 2FGQX 1MPFA 3JTYA 4FRTA 1GFOA 3POUA 3SY7A 2O4VA 3VY9X 2XE1A 3SYBA 1BH3A 3SYSA 3WI4A 2FGRA 3VY8X 4LSIA 3SZVA 4FRXA 4RJWA 5PRNA 3PORA 3A2SX 4GCQA 3K19A 2OMFA 4LSFA 4JFBA 1E54A 5FVNA 2QTKA 4FOZA 2Y0HA 2J4UP 1H6S1 4LSHA 2PORA 3PRNA 5DL7A 3VZTX 2ODJA 2Y0KA
chains in the Genus database with same CATH superfamily
4PUXA 3UU2A 3AA7A 5AFUK 3T0SA 1GFNA 3HWBA 3T24A 3HOEA 2M07A 4O4XA 4FMSA 4AYID 4KRAA 3DA4A 4IL6O 4F4BA 1T1LA 3VZUX 3HW9A 3POQA 3EMNX 2GE4A 4N59A 1HXUA 1IZNA 2R8AA 1ZHXA 5D5DA 5G3AA 3DWNA 5GTHO 1HXXA 2X9KA 4GF4A 2WVPA 2X27X 2YNKA 3AAEB 4N74A 2JQYA 3VE1A 4FSPA 6PRNA 4AYEC 1ORMA 4G75A 2M06A 2XTRA 3BS0A 4GCPA 1OPFA 4U9CA 1BXWA 2WJQA 2PRNA 3PGRA 4G76A 3AA0A 4RJXA 1GFPA 5DL5A 1QJ9A 3PGSA 4AYNA 4UB8O 1Q9GA 1PRNA 2K4TA 4FESA 4FT6A 4KR8A 5TISO 4RLBA 3AA0B 5G39A 2K0LA 4BUMX 3T20A 1BT9A 4FZNA 3QRAA 3LK2A 1Q9FA 4KR4A 2J1NA 2XTQA 3AAAB 1PHOA 2KDYA 4JCHA 5B66O 4XNLA 1ZHWA 4C69X 3AA6A 1T16A 2IWWA 3KZIO 3AA7B 3LK2B 4FSOA 1HXTA 4O49A 1MM4A 3O0EA 2N2LA 2F1CX 3KVDD 2F1TA 3POXA 3DA3A 4C4VA 5JDPA 2YPVA 4C00A 4GCSA 1GFQA 5E79O 4AFKA 4E1SA 3PQUA 1QJPA 3VZWX 1ZHZA 4C4VB 8PRNA 4O3XB 2ZLDA 3GP6A 3TZGA 5IYUA 3NJTA 4D64A 1IZNB 3HOLA 4RLCA 4Z3TA 4AUIA 4PR7A 1GFMA 3DZMA 2R4LA 3DWOX 4FZMA 5DL8A 2XE5A 2XE2A 3UPGA 4O3YA 3G7GA 4LSEA 3WU2O 7PRNA 5KAFO 3FYXA 2KC0A 5GV0A 3A0HO 4AKMA 2XG6A 2WJRA 3WI5A 2KXPA 3BRYA 2ZFGA 2MHLA 1P4TA 3NSGA 4FZLA 4RL9A 2Y2XA 4D5UA 2KXPB 4D65A 3AA1A 2XE3A 2Y0LA 3QRCA 1OSMA 4O4UA 2R88A 4FQEA 3SY9A 5ADXL 1MM5A 2R4NA 3AA6B 4K3BA 4O3ZA 2KZ7A 3SZDA 4B61A 2JMMA 4QQ1A 2LHFA 4UB6O 3C5OA 5DL6A 3VE2A 3PGUA 2Y0KA 2KZ7B 2FGQX 1MPFA 3JTYA 2F1VA 4FRTA 2LFUA 1GFOA 3POUA 3A0BO 3SY7A 2O4VA 4N75A 2Y7SA 3LK41 2XE1A 3SYBA 1BH3A 3VY9X 5T5FA 3SYSA 3LK3A 2N2MA 3WI4A 2MNHA 2R89A 2FGRA 4GHBA 3V8UA 3BRZA 5AFUL 3VY8X 3JCUO 4FUVA 4LSIA 3SZVA 1S5LO 1ZHTA 3LK3B 4FRXA 4RJWA 5PRNA 4AKRA 3PORA 4AYDC 2AXTO 3A2SX 4AYMC 5B5EO 2XMXA 1QJ8A 3LK42 4GCQA 4XNKA 4CTDA 3K19A 1G90A 4AKRB 2IWVA 2OMFA 5GTIO 4LSFA 2R4PA 3AAEA 4JFBA 4E1TA 1E54A 2W80C 3RBHA 5KAIO 5ADXK 5FVNA 2QTKA 4FOZA 2Y0HA 4K3CA 3AA1B 1H6S1 4O3WA 2J4UP 1YS5A 4LSHA 2PORA 2W81C 5H2FO 3PF1A 3PQSA 5G26A 2ERVA 4PJ0O 5EE2A 2R4OA 3PRNA 4N58A 1ZHYA 3AAAA 5DL7A 5G38A 3VZTX 2ODJA 3UAQA 1THQA 4AZLA
chains in the Genus database with same CATH topology
4PUXA 3UU2A 3AA7A 5AFUK 3T0SA 1GFNA 3HWBA 3T24A 3HOEA 2M07A 4O4XA 4FMSA 4AYID 4KRAA 3DA4A 4F4BA 3VZUX 3HW9A 3POQA 3EMNX 2GE4A 4N59A 1HXUA 1IZNA 1ZHXA 5D5DA 1HXXA 4GF4A 2YNKA 2X27X 3AAEB 3VE1A 4FSPA 6PRNA 4AYEC 1ORMA 4G75A 2XTRA 2M06A 4GCPA 1OPFA 4U9CA 1BXWA 4G76A 2PRNA 4RJXA 3AA0A 5DL5A 1GFPA 4AYNA 1QJ9A 1Q9GA 1PRNA 2K4TA 4FESA 4FT6A 4KR8A 4RLBA 3AA0B 4BUMX 2K0LA 3T20A 1BT9A 4FZNA 3QRAA 3LK2A 1Q9FA 4KR4A 2J1NA 2XTQA 3AAAB 1PHOA 2KDYA 4JCHA 4XNLA 1ZHWA 4C69X 3AA6A 3AA7B 3LK2B 4FSOA 1HXTA 4O49A 1MM4A 3O0EA 2N2LA 3KVDD 2F1TA 3POXA 3DA3A 5JDPA 2YPVA 4GCSA 1GFQA 4AFKA 4E1SA 3PQUA 1QJPA 3VZWX 1ZHZA 8PRNA 4O3XB 2ZLDA 3GP6A 3TZGA 5IYUA 4D64A 1IZNB 3HOLA 4RLCA 4Z3TA 4AUIA 1GFMA 4FZMA 5DL8A 2XE5A 2XE2A 3UPGA 4O3YA 3G7GA 4LSEA 7PRNA 3FYXA 2KC0A 5GV0A 4AKMA 2XG6A 3WI5A 2KXPA 2ZFGA 2MHLA 1P4TA 3NSGA 4FZLA 4RL9A 2Y2XA 4D5UA 2KXPB 4D65A 3AA1A 2XE3A 2Y0LA 3QRCA 1OSMA 4O4UA 3SY9A 5ADXL 1MM5A 3AA6B 4O3ZA 4B61A 2KZ7A 3SZDA 2JMMA 4QQ1A 2LHFA 3C5OA 5DL6A 3VE2A 2Y0KA 2KZ7B 2FGQX 1MPFA 3JTYA 2F1VA 4FRTA 2LFUA 1GFOA 3POUA 3SY7A 2O4VA 2Y7SA 3LK41 2XE1A 3SYBA 1BH3A 3VY9X 5T5FA 3SYSA 3LK3A 2N2MA 3WI4A 2MNHA 3V8UA 2FGRA 4GHBA 5AFUL 3VY8X 4FUVA 4LSIA 3SZVA 4AZLA 1ZHTA 3LK3B 4FRXA 4RJWA 5PRNA 4AKRA 3PORA 4AYDC 3A2SX 4AYMC 2XMXA 1QJ8A 3LK42 4GCQA 4XNKA 1G90A 3K19A 4AKRB 2OMFA 4LSFA 3AAEA 4JFBA 4E1TA 1E54A 2W80C 3RBHA 5ADXK 5FVNA 2QTKA 4FOZA 2Y0HA 2J4UP 3AA1B 1H6S1 4O3WA 1YS5A 4LSHA 2PORA 2W81C 3PQSA 5G26A 2ERVA 5EE2A 3PRNA 4N58A 1ZHYA 3AAAA 5DL7A 3VZTX 2ODJA 3UAQA 1THQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UU2 A;  3T0S A;  1GFN A;  3HWB A;  3T24 A;  4FMS A;  4KRA A;  3VZU X;  3HW9 A;  3POQ A;  3EMN X;  1HXU A;  1HXX A;  4FSP A;  6PRN A;  4GCP A;  1OPF A;  4RJX A;  2PRN A;  5DL5 A;  1GFP A;  1PRN A;  2K4T A;  4FT6 A;  4KR8 A;  4BUM X;  3T20 A;  1BT9 A;  4KR4 A;  2J1N A;  1PHO A;  4C69 X;  4FSO A;  1HXT A;  3O0E A;  3POX A;  5JDP A;  4GCS A;  1GFQ A;  3VZW X;  8PRN A;  2ZLD A;  4D64 A;  4AUI A;  1GFM A;  5DL8 A;  2XE5 A;  2XE2 A;  3UPG A;  4LSE A;  7PRN A;  3FYX A;  2XG6 A;  3WI5 A;  2ZFG A;  3NSG A;  2Y2X A;  4D5U A;  4D65 A;  2XE3 A;  2Y0L A;  1OSM A;  3SY9 A;  3SZD A;  5DL6 A;  2FGQ X;  1MPF A;  3JTY A;  4FRT A;  1GFO A;  3POU A;  3SY7 A;  2O4V A;  3VY9 X;  2XE1 A;  3SYB A;  1BH3 A;  3SYS A;  3WI4 A;  2FGR A;  3VY8 X;  4LSI A;  3SZV A;  4FRX A;  4RJW A;  5PRN A;  3POR A;  3A2S X;  4GCQ A;  3K19 A;  2OMF A;  4LSF A;  4JFB A;  1E54 A;  5FVN A;  2QTK A;  4FOZ A;  2Y0H A;  2J4U P;  1H6S 1;  4LSH A;  2POR A;  3PRN A;  5DL7 A;  3VZT X;  2ODJ A;  2Y0K A; 
#chains in the Genus database with same CATH topology
 4PUX A;  3UU2 A;  3AA7 A;  5AFU K;  3T0S A;  1GFN A;  3HWB A;  3T24 A;  3HOE A;  2M07 A;  4O4X A;  4FMS A;  4AYI D;  4KRA A;  3DA4 A;  4IL6 O;  4F4B A;  1T1L A;  3VZU X;  3HW9 A;  3POQ A;  3EMN X;  2GE4 A;  4N59 A;  1HXU A;  1IZN A;  2R8A A;  1ZHX A;  5D5D A;  5G3A A;  3DWN A;  5GTH O;  1HXX A;  2X9K A;  4GF4 A;  2WVP A;  2X27 X;  2YNK A;  3AAE B;  4N74 A;  2JQY A;  3VE1 A;  4FSP A;  6PRN A;  4AYE C;  1ORM A;  4G75 A;  2M06 A;  2XTR A;  3BS0 A;  4GCP A;  1OPF A;  4U9C A;  1BXW A;  2WJQ A;  2PRN A;  3PGR A;  4G76 A;  3AA0 A;  4RJX A;  1GFP A;  5DL5 A;  1QJ9 A;  3PGS A;  4AYN A;  4UB8 O;  1Q9G A;  1PRN A;  2K4T A;  4FES A;  4FT6 A;  4KR8 A;  5TIS O;  4RLB A;  3AA0 B;  5G39 A;  2K0L A;  4BUM X;  3T20 A;  1BT9 A;  4FZN A;  3QRA A;  3LK2 A;  1Q9F A;  4KR4 A;  2J1N A;  2XTQ A;  3AAA B;  1PHO A;  2KDY A;  4JCH A;  5B66 O;  4XNL A;  1ZHW A;  4C69 X;  3AA6 A;  1T16 A;  2IWW A;  3KZI O;  3AA7 B;  3LK2 B;  4FSO A;  1HXT A;  4O49 A;  1MM4 A;  3O0E A;  2N2L A;  2F1C X;  3KVD D;  2F1T A;  3POX A;  3DA3 A;  4C4V A;  5JDP A;  2YPV A;  4C00 A;  4GCS A;  1GFQ A;  5E79 O;  4AFK A;  4E1S A;  3PQU A;  1QJP A;  3VZW X;  1ZHZ A;  4C4V B;  8PRN A;  4O3X B;  2ZLD A;  3GP6 A;  3TZG A;  5IYU A;  3NJT A;  4D64 A;  1IZN B;  3HOL A;  4RLC A;  4Z3T A;  4AUI A;  4PR7 A;  1GFM A;  3DZM A;  2R4L A;  3DWO X;  4FZM A;  5DL8 A;  2XE5 A;  2XE2 A;  3UPG A;  4O3Y A;  3G7G A;  4LSE A;  3WU2 O;  7PRN A;  5KAF O;  3FYX A;  2KC0 A;  5GV0 A;  3A0H O;  4AKM A;  2XG6 A;  2WJR A;  3WI5 A;  2KXP A;  3BRY A;  2ZFG A;  2MHL A;  1P4T A;  3NSG A;  4FZL A;  4RL9 A;  2Y2X A;  4D5U A;  2KXP B;  4D65 A;  3AA1 A;  2XE3 A;  2Y0L A;  3QRC A;  1OSM A;  4O4U A;  2R88 A;  4FQE A;  3SY9 A;  5ADX L;  1MM5 A;  2R4N A;  3AA6 B;  4K3B A;  4O3Z A;  2KZ7 A;  3SZD A;  4B61 A;  2JMM A;  4QQ1 A;  2LHF A;  4UB6 O;  3C5O A;  5DL6 A;  3VE2 A;  3PGU A;  2Y0K A;  2KZ7 B;  2FGQ X;  1MPF A;  3JTY A;  2F1V A;  4FRT A;  2LFU A;  1GFO A;  3POU A;  3A0B O;  3SY7 A;  2O4V A;  4N75 A;  2Y7S A;  3LK4 1;  2XE1 A;  3SYB A;  1BH3 A;  3VY9 X;  5T5F A;  3SYS A;  3LK3 A;  2N2M A;  3WI4 A;  2MNH A;  2R89 A;  2FGR A;  4GHB A;  3V8U A;  3BRZ A;  5AFU L;  3VY8 X;  3JCU O;  4FUV A;  4LSI A;  3SZV A;  1S5L O;  1ZHT A;  3LK3 B;  4FRX A;  4RJW A;  5PRN A;  4AKR A;  3POR A;  4AYD C;  2AXT O;  3A2S X;  4AYM C;  5B5E O;  2XMX A;  1QJ8 A;  3LK4 2;  4GCQ A;  4XNK A;  4CTD A;  3K19 A;  1G90 A;  4AKR B;  2IWV A;  2OMF A;  5GTI O;  4LSF A;  2R4P A;  3AAE A;  4JFB A;  4E1T A;  1E54 A;  2W80 C;  3RBH A;  5KAI O;  5ADX K;  5FVN A;  2QTK A;  4FOZ A;  2Y0H A;  4K3C A;  3AA1 B;  1H6S 1;  4O3W A;  2J4U P;  1YS5 A;  4LSH A;  2POR A;  2W81 C;  5H2F O;  3PF1 A;  3PQS A;  5G26 A;  2ERV A;  4PJ0 O;  5EE2 A;  2R4O A;  3PRN A;  4N58 A;  1ZHY A;  3AAA A;  5DL7 A;  5G38 A;  3VZT X;  2ODJ A;  3UAQ A;  1THQ A;  4AZL A; 
#chains in the Genus database with same CATH homology
 4PUX A;  3UU2 A;  3AA7 A;  5AFU K;  3T0S A;  1GFN A;  3HWB A;  3T24 A;  3HOE A;  2M07 A;  4O4X A;  4FMS A;  4AYI D;  4KRA A;  3DA4 A;  4F4B A;  3VZU X;  3HW9 A;  3POQ A;  3EMN X;  2GE4 A;  4N59 A;  1HXU A;  1IZN A;  1ZHX A;  5D5D A;  1HXX A;  4GF4 A;  2YNK A;  2X27 X;  3AAE B;  3VE1 A;  4FSP A;  6PRN A;  4AYE C;  1ORM A;  4G75 A;  2XTR A;  2M06 A;  4GCP A;  1OPF A;  4U9C A;  1BXW A;  4G76 A;  2PRN A;  4RJX A;  3AA0 A;  5DL5 A;  1GFP A;  4AYN A;  1QJ9 A;  1Q9G A;  1PRN A;  2K4T A;  4FES A;  4FT6 A;  4KR8 A;  4RLB A;  3AA0 B;  4BUM X;  2K0L A;  3T20 A;  1BT9 A;  4FZN A;  3QRA A;  3LK2 A;  1Q9F A;  4KR4 A;  2J1N A;  2XTQ A;  3AAA B;  1PHO A;  2KDY A;  4JCH A;  4XNL A;  1ZHW A;  4C69 X;  3AA6 A;  3AA7 B;  3LK2 B;  4FSO A;  1HXT A;  4O49 A;  1MM4 A;  3O0E A;  2N2L A;  3KVD D;  2F1T A;  3POX A;  3DA3 A;  5JDP A;  2YPV A;  4GCS A;  1GFQ A;  4AFK A;  4E1S A;  3PQU A;  1QJP A;  3VZW X;  1ZHZ A;  8PRN A;  4O3X B;  2ZLD A;  3GP6 A;  3TZG A;  5IYU A;  4D64 A;  1IZN B;  3HOL A;  4RLC A;  4Z3T A;  4AUI A;  1GFM A;  4FZM A;  5DL8 A;  2XE5 A;  2XE2 A;  3UPG A;  4O3Y A;  3G7G A;  4LSE A;  7PRN A;  3FYX A;  2KC0 A;  5GV0 A;  4AKM A;  2XG6 A;  3WI5 A;  2KXP A;  2ZFG A;  2MHL A;  1P4T A;  3NSG A;  4FZL A;  4RL9 A;  2Y2X A;  4D5U A;  2KXP B;  4D65 A;  3AA1 A;  2XE3 A;  2Y0L A;  3QRC A;  1OSM A;  4O4U A;  3SY9 A;  5ADX L;  1MM5 A;  3AA6 B;  4O3Z A;  4B61 A;  2KZ7 A;  3SZD A;  2JMM A;  4QQ1 A;  2LHF A;  3C5O A;  5DL6 A;  3VE2 A;  2Y0K A;  2KZ7 B;  2FGQ X;  1MPF A;  3JTY A;  2F1V A;  4FRT A;  2LFU A;  1GFO A;  3POU A;  3SY7 A;  2O4V A;  2Y7S A;  3LK4 1;  2XE1 A;  3SYB A;  1BH3 A;  3VY9 X;  5T5F A;  3SYS A;  3LK3 A;  2N2M A;  3WI4 A;  2MNH A;  3V8U A;  2FGR A;  4GHB A;  5AFU L;  3VY8 X;  4FUV A;  4LSI A;  3SZV A;  4AZL A;  1ZHT A;  3LK3 B;  4FRX A;  4RJW A;  5PRN A;  4AKR A;  3POR A;  4AYD C;  3A2S X;  4AYM C;  2XMX A;  1QJ8 A;  3LK4 2;  4GCQ A;  4XNK A;  1G90 A;  3K19 A;  4AKR B;  2OMF A;  4LSF A;  3AAE A;  4JFB A;  4E1T A;  1E54 A;  2W80 C;  3RBH A;  5ADX K;  5FVN A;  2QTK A;  4FOZ A;  2Y0H A;  2J4U P;  3AA1 B;  1H6S 1;  4O3W A;  1YS5 A;  4LSH A;  2POR A;  2W81 C;  3PQS A;  5G26 A;  2ERV A;  5EE2 A;  3PRN A;  4N58 A;  1ZHY A;  3AAA A;  5DL7 A;  3VZT X;  2ODJ A;  3UAQ A;  1THQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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