4FT6A

Crystal structure of pseudomonas aeruginosa occk9 (opdg)
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
387
structure length
387
Chain Sequence
EGFIEDASVSLGLRNLYFNRDFRQPGAAQSKQEEWAQGFLLQAKSGYTQGTLGLGVELIGQLGLKLDSSPDRAGSGLLPRHADGRAADDYARLGVAPKLKLSNTELKLGELLPELPILLRNDGRLLPQTFQGGMLTSREIAGLTLHGGQMRSLSQRNSSDHQDLSVDGRGGAFSDRFDYLGAEYRFNAERSQVGLWQARLQDIYRQDYYSLSHKQSFGGWRLGASVGLFDTRDEGAAKLGELENRALTGFFSATRGGHSLGAGYQRMYGDDGMLYIAGTSTPLVNDIQVRNFTSAGERSWQLRYDYDFVALGIPGLTAMARYASGAHARTKAMDDGRAWERDVDVAYVIQSGPLKNLGLRWRNAMLRSNHAADVDENRLILSYSLPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
molecule keywords Probable porin
total genus 106
structure length 387
sequence length 387
ec nomenclature
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4ft6A01
2XG6A 8PRNA 6PRNA 2XE1A 4D64A 2PRNA 1HXXA 3SY9A 1HXUA 5DL5A 4D65A 2FGQX 4JFBA 3VZTX 3POUA 4KRAA 4LSFA 2FGRA 3WI4A 4FSOA 3SYBA 3SY7A 5DL7A 4FMSA 3T20A 1GFOA 3WI5A 3SZVA 2O4VA 4D5UA 3UPGA 1GFMA 1E54A 3JTYA 1GFNA 3EMNX 3HW9A 4GCPA 4C69X 2Y0HA 2J4UP 4KR4A 1PRNA 3FYXA 1HXTA 3VY9X 3T24A 1GFPA 5DL6A 5FVNA 3O0EA 7PRNA 4LSEA 3VY8X 4BUMX 3PORA 3VZWX 3A2SX 5PRNA 1MPFA 2K4TA 4FRTA 3HWBA 4FT6A 4FRXA 3VZUX 3SZDA 2OMFA 1GFQA 4AUIA 1H6S1 4GCQA 2Y0LA 5DL8A 3SYSA 2QTKA 3K19A 3UU2A 1OSMA 1BH3A 1OPFA 1BT9A 2ODJA 3POQA 4RJWA 4RJXA 2ZFGA 4FOZA 5JDPA 2PORA 2ZLDA 2XE3A 3T0SA 4KR8A 2J1NA 1PHOA 3POXA 3NSGA 2XE2A 4GCSA 4FSPA 2XE5A 4LSHA 4LSIA 2Y0KA 2Y2XA 3PRNA
chains in the Genus database with same CATH superfamily
5TISO 2W81C 2XG6A 8PRNA 4FESA 4XNLA 5D5DA 6PRNA 2XE1A 4QQ1A 4D64A 2PRNA 4O49A 3TZGA 2R4LA 1HXXA 4E1TA 4K3BA 4XNKA 3AA6A 3SY9A 1HXUA 5DL5A 3LK3B 3LK41 4D65A 1ORMA 2FGQX 4JFBA 3VZTX 3POUA 2AXTO 2XTQA 3WU2O 5B5EO 4KRAA 2R8AA 4LSFA 4O3XB 4FZMA 3LK3A 2FGRA 3G7GA 2JMMA 3WI4A 4C4VA 4PR7A 4FSOA 3SYBA 4CTDA 3SY7A 5DL7A 4C4VB 3PGSA 4FMSA 1IZNB 3AA0B 4RLBA 5GTHO 3T20A 1GFOA 3WI5A 3VE2A 3SZVA 2O4VA 4D5UA 2M06A 3AAEA 5AFUK 1GFMA 3UPGA 3DWOX 3BRZA 1E54A 3DA4A 4G76A 4AYID 5IYUA 3JTYA 1GFNA 3EMNX 3HW9A 4GCPA 3BS0A 4RL9A 1QJ9A 3AA1B 3KVDD 3PQUA 1T16A 2MHLA 1QJPA 3DWNA 1THQA 2WJQA 4C69X 2Y0HA 4B61A 2J4UP 4KR4A 3AA7B 1YS5A 4FZLA 4O3WA 5G38A 1ZHXA 4GHBA 1PRNA 2LFUA 5KAFO 2YPVA 1ZHWA 2JQYA 4IL6O 2M07A 3FYXA 3A0HO 4FZNA 2GE4A 4O3ZA 1HXTA 5G26A 3VY9X 5GV0A 2IWWA 3LK2B 2X27X 4O4XA 3T24A 2YNKA 2R89A 2Y7SA 3AAAA 3UU2A 2KC0A 3NJTA 1GFPA 4RLCA 2WVPA 2MNHA 5DL6A 3RBHA 5FVNA 2X9KA 1Q9FA 2W80C 3O0EA 5G39A 3LK2A 4PJ0O 4E1SA 4AYNA 7PRNA 4AYMC 3A0BO 5B66O 2KZ7B 4LSEA 4N74A 5EE2A 2XTRA 4Z3TA 3GP6A 3VY8X 4C00A 3PGRA 3PQSA 4F4BA 2XMXA 5E79O 4FUVA 3AAAB 4BUMX 4AKRA 2IWVA 3PORA 3VZWX 3KZIO 5KAIO 4O4UA 3A2SX 4N75A 5PRNA 2K0LA 1MPFA 4UB8O 2WJRA 2R4NA 2R4PA 2K4TA 4FRTA 4FQEA 3HWBA 1QJ8A 3HOEA 2LHFA 3JCUO 4FRXA 4FT6A 1G90A 3VZUX 2KXPA 3SZDA 3LK42 2OMFA 1GFQA 4AUIA 1H6S1 3BRYA 4GCQA 2N2MA 4AYDC 2N2LA 3DA3A 4N58A 2Y0LA 5DL8A 3AAEB 3SYSA 3VE1A 2QTKA 4O3YA 3K19A 2ERVA 1OSMA 2KZ7A 2R4OA 1BH3A 1OPFA 4GF4A 1BT9A 4G75A 3AA1A 4PUXA 2F1VA 2KDYA 4UB6O 2ODJA 5G3AA 3POQA 4RJWA 5GTIO 1ZHYA 4RJXA 3UAQA 4AFKA 2ZFGA 5T5FA 4FOZA 5JDPA 2PORA 3C5OA 3DZMA 3PGUA 2ZLDA 1T1LA 4U9CA 2XE3A 4JCHA 2R88A 3T0SA 3AA7A 2KXPB 1Q9GA 3PF1A 2F1CX 1ZHZA 5ADXL 4KR8A 2J1NA 1MM4A 1IZNA 3AA0A 4AZLA 5H2FO 3AA6B 1MM5A 1PHOA 3POXA 4K3CA 4AKMA 3NSGA 5AFUL 2XE2A 4GCSA 3HOLA 4FSPA 2F1TA 3V8UA 1S5LO 2XE5A 5ADXK 1P4TA 4LSHA 1ZHTA 4LSIA 4N59A 2Y0KA 3QRCA 4AKRB 4AYEC 1BXWA 3QRAA 2Y2XA 3PRNA
chains in the Genus database with same CATH topology
2W81C 2XG6A 8PRNA 4FESA 4XNLA 5D5DA 6PRNA 2XE1A 4QQ1A 4D64A 2PRNA 4O49A 3TZGA 1HXXA 4E1TA 4XNKA 3AA6A 3SY9A 1HXUA 5DL5A 3LK3B 3LK41 4D65A 1ORMA 2FGQX 4JFBA 3VZTX 3POUA 2XTQA 4KRAA 4LSFA 4O3XB 4FZMA 3LK3A 2FGRA 3G7GA 2JMMA 3WI4A 4FSOA 3SYBA 3SY7A 5DL7A 4FMSA 1IZNB 3AA0B 4RLBA 3T20A 1GFOA 3WI5A 3VE2A 3SZVA 2O4VA 4D5UA 2M06A 3AAEA 5AFUK 1GFMA 3UPGA 4G76A 1E54A 3DA4A 4AYID 5IYUA 3JTYA 1GFNA 3EMNX 3HW9A 4GCPA 4RL9A 1QJ9A 3AA1B 3KVDD 3PQUA 2MHLA 1QJPA 1THQA 4C69X 2Y0HA 4B61A 2J4UP 4KR4A 3AA7B 1YS5A 4FZLA 4O3WA 1ZHXA 4GHBA 1PRNA 2LFUA 2YPVA 1ZHWA 2M07A 3FYXA 4FZNA 2GE4A 4O3ZA 1HXTA 5G26A 3VY9X 5GV0A 3LK2B 2X27X 4O4XA 3T24A 2YNKA 2Y7SA 3AAAA 2KC0A 1GFPA 4RLCA 2MNHA 5DL6A 3RBHA 5FVNA 1Q9FA 2W80C 3O0EA 4E1SA 3LK2A 4AYNA 7PRNA 4AYMC 2KZ7B 4LSEA 5EE2A 2XTRA 4Z3TA 3GP6A 3VY8X 4F4BA 3PQSA 2XMXA 4FUVA 3AAAB 4BUMX 4AKRA 3PORA 3VZWX 4O4UA 3A2SX 5PRNA 2K0LA 1MPFA 2K4TA 4FRTA 1G90A 3HWBA 1QJ8A 3HOEA 2LHFA 4FT6A 4FRXA 3VZUX 2KXPA 3SZDA 3LK42 2OMFA 1GFQA 4AUIA 1H6S1 4AYDC 4GCQA 2N2MA 2N2LA 3DA3A 4N58A 2Y0LA 5DL8A 3AAEB 3SYSA 3VE1A 2QTKA 4O3YA 3K19A 2ERVA 1OSMA 2KZ7A 3UU2A 1BH3A 1OPFA 4GF4A 1BT9A 4G75A 3AA1A 4PUXA 2F1VA 2KDYA 5AFUL 2ODJA 3POQA 4RJWA 1ZHYA 4RJXA 3UAQA 4AFKA 2ZFGA 5T5FA 4FOZA 5JDPA 2PORA 3C5OA 2ZLDA 4U9CA 2XE3A 4JCHA 3T0SA 3AA7A 2KXPB 1Q9GA 1ZHZA 5ADXL 4KR8A 2J1NA 1MM4A 1IZNA 3AA0A 4AZLA 3AA6B 1MM5A 1PHOA 3POXA 4AKMA 3NSGA 2XE2A 4GCSA 3HOLA 4FSPA 2F1TA 3V8UA 2XE5A 5ADXK 1P4TA 4LSHA 1ZHTA 4LSIA 4N59A 2Y0KA 3QRCA 4AKRB 4AYEC 1BXWA 3QRAA 2Y2XA 3PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XG6 A;  8PRN A;  6PRN A;  2XE1 A;  4D64 A;  2PRN A;  1HXX A;  3SY9 A;  1HXU A;  5DL5 A;  4D65 A;  2FGQ X;  4JFB A;  3VZT X;  3POU A;  4KRA A;  4LSF A;  2FGR A;  3WI4 A;  4FSO A;  3SYB A;  3SY7 A;  5DL7 A;  4FMS A;  3T20 A;  1GFO A;  3WI5 A;  3SZV A;  2O4V A;  4D5U A;  3UPG A;  1GFM A;  1E54 A;  3JTY A;  1GFN A;  3EMN X;  3HW9 A;  4GCP A;  4C69 X;  2Y0H A;  2J4U P;  4KR4 A;  1PRN A;  3FYX A;  1HXT A;  3VY9 X;  3T24 A;  1GFP A;  5DL6 A;  5FVN A;  3O0E A;  7PRN A;  4LSE A;  3VY8 X;  4BUM X;  3POR A;  3VZW X;  3A2S X;  5PRN A;  1MPF A;  2K4T A;  4FRT A;  3HWB A;  4FT6 A;  4FRX A;  3VZU X;  3SZD A;  2OMF A;  1GFQ A;  4AUI A;  1H6S 1;  4GCQ A;  2Y0L A;  5DL8 A;  3SYS A;  2QTK A;  3K19 A;  3UU2 A;  1OSM A;  1BH3 A;  1OPF A;  1BT9 A;  2ODJ A;  3POQ A;  4RJW A;  4RJX A;  2ZFG A;  4FOZ A;  5JDP A;  2POR A;  2ZLD A;  2XE3 A;  3T0S A;  4KR8 A;  2J1N A;  1PHO A;  3POX A;  3NSG A;  2XE2 A;  4GCS A;  4FSP A;  2XE5 A;  4LSH A;  4LSI A;  2Y0K A;  2Y2X A;  3PRN A; 
#chains in the Genus database with same CATH topology
 5TIS O;  2W81 C;  2XG6 A;  8PRN A;  4FES A;  4XNL A;  5D5D A;  6PRN A;  2XE1 A;  4QQ1 A;  4D64 A;  2PRN A;  4O49 A;  3TZG A;  2R4L A;  1HXX A;  4E1T A;  4K3B A;  4XNK A;  3AA6 A;  3SY9 A;  1HXU A;  5DL5 A;  3LK3 B;  3LK4 1;  4D65 A;  1ORM A;  2FGQ X;  4JFB A;  3VZT X;  3POU A;  2AXT O;  2XTQ A;  3WU2 O;  5B5E O;  4KRA A;  2R8A A;  4LSF A;  4O3X B;  4FZM A;  3LK3 A;  2FGR A;  3G7G A;  2JMM A;  3WI4 A;  4C4V A;  4PR7 A;  4FSO A;  3SYB A;  4CTD A;  3SY7 A;  5DL7 A;  4C4V B;  3PGS A;  4FMS A;  1IZN B;  3AA0 B;  4RLB A;  5GTH O;  3T20 A;  1GFO A;  3WI5 A;  3VE2 A;  3SZV A;  2O4V A;  4D5U A;  2M06 A;  3AAE A;  5AFU K;  1GFM A;  3UPG A;  3DWO X;  3BRZ A;  1E54 A;  3DA4 A;  4G76 A;  4AYI D;  5IYU A;  3JTY A;  1GFN A;  3EMN X;  3HW9 A;  4GCP A;  3BS0 A;  4RL9 A;  1QJ9 A;  3AA1 B;  3KVD D;  3PQU A;  1T16 A;  2MHL A;  1QJP A;  3DWN A;  1THQ A;  2WJQ A;  4C69 X;  2Y0H A;  4B61 A;  2J4U P;  4KR4 A;  3AA7 B;  1YS5 A;  4FZL A;  4O3W A;  5G38 A;  1ZHX A;  4GHB A;  1PRN A;  2LFU A;  5KAF O;  2YPV A;  1ZHW A;  2JQY A;  4IL6 O;  2M07 A;  3FYX A;  3A0H O;  4FZN A;  2GE4 A;  4O3Z A;  1HXT A;  5G26 A;  3VY9 X;  5GV0 A;  2IWW A;  3LK2 B;  2X27 X;  4O4X A;  3T24 A;  2YNK A;  2R89 A;  2Y7S A;  3AAA A;  3UU2 A;  2KC0 A;  3NJT A;  1GFP A;  4RLC A;  2WVP A;  2MNH A;  5DL6 A;  3RBH A;  5FVN A;  2X9K A;  1Q9F A;  2W80 C;  3O0E A;  5G39 A;  3LK2 A;  4PJ0 O;  4E1S A;  4AYN A;  7PRN A;  4AYM C;  3A0B O;  5B66 O;  2KZ7 B;  4LSE A;  4N74 A;  5EE2 A;  2XTR A;  4Z3T A;  3GP6 A;  3VY8 X;  4C00 A;  3PGR A;  3PQS A;  4F4B A;  2XMX A;  5E79 O;  4FUV A;  3AAA B;  4BUM X;  4AKR A;  2IWV A;  3POR A;  3VZW X;  3KZI O;  5KAI O;  4O4U A;  3A2S X;  4N75 A;  5PRN A;  2K0L A;  1MPF A;  4UB8 O;  2WJR A;  2R4N A;  2R4P A;  2K4T A;  4FRT A;  4FQE A;  3HWB A;  1QJ8 A;  3HOE A;  2LHF A;  3JCU O;  4FRX A;  4FT6 A;  1G90 A;  3VZU X;  2KXP A;  3SZD A;  3LK4 2;  2OMF A;  1GFQ A;  4AUI A;  1H6S 1;  3BRY A;  4GCQ A;  2N2M A;  4AYD C;  2N2L A;  3DA3 A;  4N58 A;  2Y0L A;  5DL8 A;  3AAE B;  3SYS A;  3VE1 A;  2QTK A;  4O3Y A;  3K19 A;  2ERV A;  1OSM A;  2KZ7 A;  2R4O A;  1BH3 A;  1OPF A;  4GF4 A;  1BT9 A;  4G75 A;  3AA1 A;  4PUX A;  2F1V A;  2KDY A;  4UB6 O;  2ODJ A;  5G3A A;  3POQ A;  4RJW A;  5GTI O;  1ZHY A;  4RJX A;  3UAQ A;  4AFK A;  2ZFG A;  5T5F A;  4FOZ A;  5JDP A;  2POR A;  3C5O A;  3DZM A;  3PGU A;  2ZLD A;  1T1L A;  4U9C A;  2XE3 A;  4JCH A;  2R88 A;  3T0S A;  3AA7 A;  2KXP B;  1Q9G A;  3PF1 A;  2F1C X;  1ZHZ A;  5ADX L;  4KR8 A;  2J1N A;  1MM4 A;  1IZN A;  3AA0 A;  4AZL A;  5H2F O;  3AA6 B;  1MM5 A;  1PHO A;  3POX A;  4K3C A;  4AKM A;  3NSG A;  5AFU L;  2XE2 A;  4GCS A;  3HOL A;  4FSP A;  2F1T A;  3V8U A;  1S5L O;  2XE5 A;  5ADX K;  1P4T A;  4LSH A;  1ZHT A;  4LSI A;  4N59 A;  2Y0K A;  3QRC A;  4AKR B;  4AYE C;  1BXW A;  3QRA A;  2Y2X A;  3PRN A; 
#chains in the Genus database with same CATH homology
 2W81 C;  2XG6 A;  8PRN A;  4FES A;  4XNL A;  5D5D A;  6PRN A;  2XE1 A;  4QQ1 A;  4D64 A;  2PRN A;  4O49 A;  3TZG A;  1HXX A;  4E1T A;  4XNK A;  3AA6 A;  3SY9 A;  1HXU A;  5DL5 A;  3LK3 B;  3LK4 1;  4D65 A;  1ORM A;  2FGQ X;  4JFB A;  3VZT X;  3POU A;  2XTQ A;  4KRA A;  4LSF A;  4O3X B;  4FZM A;  3LK3 A;  2FGR A;  3G7G A;  2JMM A;  3WI4 A;  4FSO A;  3SYB A;  3SY7 A;  5DL7 A;  4FMS A;  1IZN B;  3AA0 B;  4RLB A;  3T20 A;  1GFO A;  3WI5 A;  3VE2 A;  3SZV A;  2O4V A;  4D5U A;  2M06 A;  3AAE A;  5AFU K;  1GFM A;  3UPG A;  4G76 A;  1E54 A;  3DA4 A;  4AYI D;  5IYU A;  3JTY A;  1GFN A;  3EMN X;  3HW9 A;  4GCP A;  4RL9 A;  1QJ9 A;  3AA1 B;  3KVD D;  3PQU A;  2MHL A;  1QJP A;  1THQ A;  4C69 X;  2Y0H A;  4B61 A;  2J4U P;  4KR4 A;  3AA7 B;  1YS5 A;  4FZL A;  4O3W A;  1ZHX A;  4GHB A;  1PRN A;  2LFU A;  2YPV A;  1ZHW A;  2M07 A;  3FYX A;  4FZN A;  2GE4 A;  4O3Z A;  1HXT A;  5G26 A;  3VY9 X;  5GV0 A;  3LK2 B;  2X27 X;  4O4X A;  3T24 A;  2YNK A;  2Y7S A;  3AAA A;  2KC0 A;  1GFP A;  4RLC A;  2MNH A;  5DL6 A;  3RBH A;  5FVN A;  1Q9F A;  2W80 C;  3O0E A;  4E1S A;  3LK2 A;  4AYN A;  7PRN A;  4AYM C;  2KZ7 B;  4LSE A;  5EE2 A;  2XTR A;  4Z3T A;  3GP6 A;  3VY8 X;  4F4B A;  3PQS A;  2XMX A;  4FUV A;  3AAA B;  4BUM X;  4AKR A;  3POR A;  3VZW X;  4O4U A;  3A2S X;  5PRN A;  2K0L A;  1MPF A;  2K4T A;  4FRT A;  1G90 A;  3HWB A;  1QJ8 A;  3HOE A;  2LHF A;  4FT6 A;  4FRX A;  3VZU X;  2KXP A;  3SZD A;  3LK4 2;  2OMF A;  1GFQ A;  4AUI A;  1H6S 1;  4AYD C;  4GCQ A;  2N2M A;  2N2L A;  3DA3 A;  4N58 A;  2Y0L A;  5DL8 A;  3AAE B;  3SYS A;  3VE1 A;  2QTK A;  4O3Y A;  3K19 A;  2ERV A;  1OSM A;  2KZ7 A;  3UU2 A;  1BH3 A;  1OPF A;  4GF4 A;  1BT9 A;  4G75 A;  3AA1 A;  4PUX A;  2F1V A;  2KDY A;  5AFU L;  2ODJ A;  3POQ A;  4RJW A;  1ZHY A;  4RJX A;  3UAQ A;  4AFK A;  2ZFG A;  5T5F A;  4FOZ A;  5JDP A;  2POR A;  3C5O A;  2ZLD A;  4U9C A;  2XE3 A;  4JCH A;  3T0S A;  3AA7 A;  2KXP B;  1Q9G A;  1ZHZ A;  5ADX L;  4KR8 A;  2J1N A;  1MM4 A;  1IZN A;  3AA0 A;  4AZL A;  3AA6 B;  1MM5 A;  1PHO A;  3POX A;  4AKM A;  3NSG A;  2XE2 A;  4GCS A;  3HOL A;  4FSP A;  2F1T A;  3V8U A;  2XE5 A;  5ADX K;  1P4T A;  4LSH A;  1ZHT A;  4LSI A;  4N59 A;  2Y0K A;  3QRC A;  4AKR B;  4AYE C;  1BXW A;  3QRA A;  2Y2X A;  3PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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