4FT6A

Crystal structure of pseudomonas aeruginosa occk9 (opdg)
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
387
structure length
387
Chain Sequence
EGFIEDASVSLGLRNLYFNRDFRQPGAAQSKQEEWAQGFLLQAKSGYTQGTLGLGVELIGQLGLKLDSSPDRAGSGLLPRHADGRAADDYARLGVAPKLKLSNTELKLGELLPELPILLRNDGRLLPQTFQGGMLTSREIAGLTLHGGQMRSLSQRNSSDHQDLSVDGRGGAFSDRFDYLGAEYRFNAERSQVGLWQARLQDIYRQDYYSLSHKQSFGGWRLGASVGLFDTRDEGAAKLGELENRALTGFFSATRGGHSLGAGYQRMYGDDGMLYIAGTSTPLVNDIQVRNFTSAGERSWQLRYDYDFVALGIPGLTAMARYASGAHARTKAMDDGRAWERDVDVAYVIQSGPLKNLGLRWRNAMLRSNHAADVDENRLILSYSLPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable porin
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 106
structure length 387
sequence length 387
ec nomenclature
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4ft6A01
4LSFA 2K4TA 4D5UA 3VY9X 3T20A 2PRNA 1GFQA 3WI4A 2FGQX 1PRNA 2XE1A 4FT6A 1BH3A 4GCSA 3POQA 1E54A 3HWBA 4FOZA 1OPFA 1GFOA 3VZWX 4FRXA 2ZFGA 3SZDA 4FMSA 4RJXA 1MPFA 3O0EA 4JFBA 1OSMA 3T24A 5PRNA 3POXA 3T0SA 2XG6A 4LSIA 8PRNA 3SZVA 1HXUA 2ZLDA 1H6S1 4LSEA 2QTKA 3PRNA 2O4VA 3POUA 4GCPA 4KRAA 5DL7A 2PORA 2ODJA 3SYBA 4C69X 4GCQA 5DL8A 3NSGA 4FSOA 6PRNA 1HXTA 2OMFA 1GFNA 2Y0KA 2Y0HA 3A2SX 2XE2A 3JTYA 3EMNX 1BT9A 4AUIA 3VY8X 3VZUX 2FGRA 1HXXA 3UPGA 4FSPA 3VZTX 3K19A 3WI5A 5DL6A 2Y0LA 3HW9A 3SY9A 3FYXA 1GFPA 5JDPA 3SY7A 3SYSA 4RJWA 2XE3A 4FRTA 5FVNA 2J4UP 1PHOA 1GFMA 5DL5A 4KR8A 4D64A 3PORA 2J1NA 3UU2A 2Y2XA 4BUMX 4LSHA 4D65A 7PRNA 4KR4A 2XE5A
chains in the Genus database with same CATH superfamily
2KXPB 2LHFA 2K0LA 3AA0A 4LSFA 2K4TA 2W81C 4D5UA 3VY9X 4B61A 3T20A 2PRNA 1GFQA 3PGUA 3WI4A 3AA1A 4AKMA 2FGQX 3LK3B 5B66O 4AYEC 1T1LA 2WVPA 4GHBA 5B5EO 3AA6A 3LK42 3KZIO 4RL9A 4FESA 1PRNA 3HOEA 4FQEA 2XE1A 3DWOX 3LK41 3QRCA 4FT6A 1BH3A 4GCSA 3POQA 5T5FA 1E54A 4AYMC 3HWBA 3AAAB 4AYNA 4FOZA 4E1TA 3PGSA 2YNKA 1OPFA 3QRAA 4GF4A 4RLCA 4UB6O 3HOLA 4AZLA 1GFOA 3VZWX 1ORMA 2R8AA 4FRXA 4AYID 3C5OA 4QQ1A 4E1SA 4AYDC 3BRYA 2ZFGA 3SZDA 2ERVA 4FMSA 2MHLA 2GE4A 3LK3A 4RLBA 4RJXA 1MPFA 3O0EA 3V8UA 3PGRA 4JFBA 1OSMA 3T24A 5PRNA 3POXA 2KC0A 3AAEA 3T0SA 3AAAA 3LK2B 4N58A 4O3XB 5H2FO 3WU2O 4F4BA 1ZHYA 1IZNA 2XG6A 4PR7A 3RBHA 1T16A 1ZHZA 4LSIA 5GV0A 8PRNA 4K3CA 3SZVA 3AAEB 5EE2A 3TZGA 3UAQA 2M06A 1HXUA 2ZLDA 3PQUA 1H6S1 3DA3A 4LSEA 1S5LO 2QTKA 3PRNA 2O4VA 2X9KA 3POUA 1IZNB 4GCPA 4KRAA 4FUVA 5DL7A 4Z3TA 2N2MA 5KAFO 5GTHO 2PORA 1ZHXA 5ADXK 2WJQA 2ODJA 3NJTA 5AFUK 2F1CX 3DA4A 3LK2A 3BRZA 3SYBA 4O4XA 2WJRA 4CTDA 2R4NA 1P4TA 5IYUA 4C69X 4GCQA 3PF1A 4O49A 5DL8A 4AFKA 3NSGA 5G38A 4C4VB 2IWVA 4U9CA 2KZ7B 5G3AA 4FSOA 6PRNA 3BS0A 1HXTA 2OMFA 1GFNA 5KAIO 2XMXA 2Y0KA 2Y0HA 3A2SX 2XE2A 2XTQA 4N59A 4N75A 2R4LA 3JCUO 3JTYA 3PQSA 1ZHWA 2LFUA 2R4PA 3A0HO 3EMNX 1BT9A 4FZNA 2XTRA 4FZMA 4N74A 4AUIA 1MM4A 3VY8X 3VZUX 2FGRA 2R4OA 3VE1A 5E79O 1MM5A 1HXXA 3UPGA 3DZMA 4O3WA 3AA7B 4FSPA 3VZTX 3K19A 4JCHA 4O3ZA 3WI5A 4C4VA 2X27X 4K3BA 2Y0LA 5DL6A 2MNHA 2KZ7A 4C00A 2JQYA 1YS5A 2R89A 4AKRB 5AFUL 3HW9A 2F1TA 3FYXA 3SY9A 1GFPA 5JDPA 3SY7A 1QJPA 3SYSA 3KVDD 4RJWA 1Q9FA 2M07A 2N2LA 2XE3A 4FRTA 5FVNA 3DWNA 4IL6O 1ZHTA 1PHOA 2J4UP 3AA0B 4PUXA 5G39A 3GP6A 2F1VA 5GTIO 2YPVA 5D5DA 2W80C 1GFMA 3A0BO 3G7GA 4XNLA 5DL5A 1QJ9A 2R88A 3AA7A 3AA1B 4KR8A 1G90A 4D64A 1THQA 2KXPA 3PORA 4UB8O 5ADXL 2AXTO 2J1NA 4G76A 4O4UA 2Y2XA 3AA6B 4XNKA 1QJ8A 4LSHA 4PJ0O 5TISO 3UU2A 4AKRA 4BUMX 4D65A 3VE2A 2KDYA 7PRNA 2IWWA 4KR4A 1BXWA 4FZLA 2JMMA 4O3YA 1Q9GA 2XE5A 4G75A 2Y7SA 5G26A
chains in the Genus database with same CATH topology
2KXPB 2LHFA 2K0LA 3AA0A 4LSFA 2K4TA 2W81C 4D5UA 3VY9X 4B61A 3T20A 2PRNA 1GFQA 3WI4A 3AA1A 4AKMA 2FGQX 3LK3B 4AYEC 4GHBA 3AA6A 3LK42 4RL9A 4FESA 1PRNA 3HOEA 2XE1A 3LK41 3QRCA 4FT6A 1BH3A 4GCSA 3POQA 5T5FA 1E54A 4AYMC 3HWBA 3AAAB 4AYNA 4FOZA 4E1TA 2YNKA 1OPFA 3QRAA 4GF4A 4RLCA 3HOLA 4AZLA 1GFOA 3VZWX 1ORMA 4FRXA 4AYID 3C5OA 4QQ1A 4E1SA 4AYDC 2ZFGA 3SZDA 2ERVA 4FMSA 2MHLA 2GE4A 3LK3A 4RLBA 4RJXA 1MPFA 3O0EA 3V8UA 4JFBA 1OSMA 3T24A 5PRNA 3POXA 2KC0A 3AAEA 3T0SA 3AAAA 3LK2B 4N58A 4O3XB 4F4BA 1ZHYA 1IZNA 2XG6A 3RBHA 1ZHZA 4LSIA 5GV0A 8PRNA 3SZVA 3AAEB 5EE2A 3TZGA 3UAQA 2M06A 1HXUA 2ZLDA 3PQUA 1H6S1 3DA3A 4LSEA 2QTKA 3PRNA 2O4VA 3POUA 4GCPA 1IZNB 4KRAA 4FUVA 5DL7A 4Z3TA 2N2MA 2PORA 1ZHXA 5ADXK 2ODJA 5AFUK 3DA4A 3LK2A 3SYBA 4O4XA 1P4TA 5IYUA 4C69X 4GCQA 4O49A 5DL8A 4AFKA 3NSGA 4U9CA 2KZ7B 4FSOA 6PRNA 1HXTA 2OMFA 1GFNA 2XMXA 2Y0KA 2Y0HA 3A2SX 2XE2A 2XTQA 4N59A 3JTYA 3PQSA 1ZHWA 2LFUA 3EMNX 1BT9A 4FZNA 2XTRA 4FZMA 4AUIA 1MM4A 3VY8X 3VZUX 2FGRA 3VE1A 1MM5A 1HXXA 3UPGA 4O3WA 3AA7B 4FSPA 3VZTX 3K19A 4JCHA 4O3ZA 3WI5A 2X27X 2Y0LA 5DL6A 2MNHA 2KZ7A 5AFUL 1YS5A 4AKRB 3HW9A 2F1TA 3FYXA 3SY9A 1GFPA 5JDPA 3SY7A 1QJPA 3SYSA 3KVDD 4RJWA 1Q9FA 2M07A 2N2LA 2XE3A 4FRTA 5FVNA 2J4UP 1ZHTA 1PHOA 3AA0B 4PUXA 3GP6A 2F1VA 2YPVA 5D5DA 2W80C 1GFMA 3G7GA 4XNLA 5DL5A 1QJ9A 4KR8A 3AA7A 3AA1B 1G90A 4D64A 1THQA 2KXPA 3PORA 5ADXL 4G76A 2J1NA 4O4UA 3UU2A 2Y2XA 3AA6B 4XNKA 1QJ8A 4LSHA 4AKRA 4BUMX 4D65A 7PRNA 3VE2A 2KDYA 4KR4A 1BXWA 4FZLA 2JMMA 4O3YA 1Q9GA 2XE5A 4G75A 2Y7SA 5G26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LSF A;  2K4T A;  4D5U A;  3VY9 X;  3T20 A;  2PRN A;  1GFQ A;  3WI4 A;  2FGQ X;  1PRN A;  2XE1 A;  4FT6 A;  1BH3 A;  4GCS A;  3POQ A;  1E54 A;  3HWB A;  4FOZ A;  1OPF A;  1GFO A;  3VZW X;  4FRX A;  2ZFG A;  3SZD A;  4FMS A;  4RJX A;  1MPF A;  3O0E A;  4JFB A;  1OSM A;  3T24 A;  5PRN A;  3POX A;  3T0S A;  2XG6 A;  4LSI A;  8PRN A;  3SZV A;  1HXU A;  2ZLD A;  1H6S 1;  4LSE A;  2QTK A;  3PRN A;  2O4V A;  3POU A;  4GCP A;  4KRA A;  5DL7 A;  2POR A;  2ODJ A;  3SYB A;  4C69 X;  4GCQ A;  5DL8 A;  3NSG A;  4FSO A;  6PRN A;  1HXT A;  2OMF A;  1GFN A;  2Y0K A;  2Y0H A;  3A2S X;  2XE2 A;  3JTY A;  3EMN X;  1BT9 A;  4AUI A;  3VY8 X;  3VZU X;  2FGR A;  1HXX A;  3UPG A;  4FSP A;  3VZT X;  3K19 A;  3WI5 A;  5DL6 A;  2Y0L A;  3HW9 A;  3SY9 A;  3FYX A;  1GFP A;  5JDP A;  3SY7 A;  3SYS A;  4RJW A;  2XE3 A;  4FRT A;  5FVN A;  2J4U P;  1PHO A;  1GFM A;  5DL5 A;  4KR8 A;  4D64 A;  3POR A;  2J1N A;  3UU2 A;  2Y2X A;  4BUM X;  4LSH A;  4D65 A;  7PRN A;  4KR4 A;  2XE5 A; 
#chains in the Genus database with same CATH topology
 2KXP B;  2LHF A;  2K0L A;  3AA0 A;  4LSF A;  2K4T A;  2W81 C;  4D5U A;  3VY9 X;  4B61 A;  3T20 A;  2PRN A;  1GFQ A;  3PGU A;  3WI4 A;  3AA1 A;  4AKM A;  2FGQ X;  3LK3 B;  5B66 O;  4AYE C;  1T1L A;  2WVP A;  4GHB A;  5B5E O;  3AA6 A;  3LK4 2;  3KZI O;  4RL9 A;  4FES A;  1PRN A;  3HOE A;  4FQE A;  2XE1 A;  3DWO X;  3LK4 1;  3QRC A;  4FT6 A;  1BH3 A;  4GCS A;  3POQ A;  5T5F A;  1E54 A;  4AYM C;  3HWB A;  3AAA B;  4AYN A;  4FOZ A;  4E1T A;  3PGS A;  2YNK A;  1OPF A;  3QRA A;  4GF4 A;  4RLC A;  4UB6 O;  3HOL A;  4AZL A;  1GFO A;  3VZW X;  1ORM A;  2R8A A;  4FRX A;  4AYI D;  3C5O A;  4QQ1 A;  4E1S A;  4AYD C;  3BRY A;  2ZFG A;  3SZD A;  2ERV A;  4FMS A;  2MHL A;  2GE4 A;  3LK3 A;  4RLB A;  4RJX A;  1MPF A;  3O0E A;  3V8U A;  3PGR A;  4JFB A;  1OSM A;  3T24 A;  5PRN A;  3POX A;  2KC0 A;  3AAE A;  3T0S A;  3AAA A;  3LK2 B;  4N58 A;  4O3X B;  5H2F O;  3WU2 O;  4F4B A;  1ZHY A;  1IZN A;  2XG6 A;  4PR7 A;  3RBH A;  1T16 A;  1ZHZ A;  4LSI A;  5GV0 A;  8PRN A;  4K3C A;  3SZV A;  3AAE B;  5EE2 A;  3TZG A;  3UAQ A;  2M06 A;  1HXU A;  2ZLD A;  3PQU A;  1H6S 1;  3DA3 A;  4LSE A;  1S5L O;  2QTK A;  3PRN A;  2O4V A;  2X9K A;  3POU A;  1IZN B;  4GCP A;  4KRA A;  4FUV A;  5DL7 A;  4Z3T A;  2N2M A;  5KAF O;  5GTH O;  2POR A;  1ZHX A;  5ADX K;  2WJQ A;  2ODJ A;  3NJT A;  5AFU K;  2F1C X;  3DA4 A;  3LK2 A;  3BRZ A;  3SYB A;  4O4X A;  2WJR A;  4CTD A;  2R4N A;  1P4T A;  5IYU A;  4C69 X;  4GCQ A;  3PF1 A;  4O49 A;  5DL8 A;  4AFK A;  3NSG A;  5G38 A;  4C4V B;  2IWV A;  4U9C A;  2KZ7 B;  5G3A A;  4FSO A;  6PRN A;  3BS0 A;  1HXT A;  2OMF A;  1GFN A;  5KAI O;  2XMX A;  2Y0K A;  2Y0H A;  3A2S X;  2XE2 A;  2XTQ A;  4N59 A;  4N75 A;  2R4L A;  3JCU O;  3JTY A;  3PQS A;  1ZHW A;  2LFU A;  2R4P A;  3A0H O;  3EMN X;  1BT9 A;  4FZN A;  2XTR A;  4FZM A;  4N74 A;  4AUI A;  1MM4 A;  3VY8 X;  3VZU X;  2FGR A;  2R4O A;  3VE1 A;  5E79 O;  1MM5 A;  1HXX A;  3UPG A;  3DZM A;  4O3W A;  3AA7 B;  4FSP A;  3VZT X;  3K19 A;  4JCH A;  4O3Z A;  3WI5 A;  4C4V A;  2X27 X;  4K3B A;  2Y0L A;  5DL6 A;  2MNH A;  2KZ7 A;  4C00 A;  2JQY A;  1YS5 A;  2R89 A;  4AKR B;  5AFU L;  3HW9 A;  2F1T A;  3FYX A;  3SY9 A;  1GFP A;  5JDP A;  3SY7 A;  1QJP A;  3SYS A;  3KVD D;  4RJW A;  1Q9F A;  2M07 A;  2N2L A;  2XE3 A;  4FRT A;  5FVN A;  3DWN A;  4IL6 O;  1ZHT A;  1PHO A;  2J4U P;  3AA0 B;  4PUX A;  5G39 A;  3GP6 A;  2F1V A;  5GTI O;  2YPV A;  5D5D A;  2W80 C;  1GFM A;  3A0B O;  3G7G A;  4XNL A;  5DL5 A;  1QJ9 A;  2R88 A;  3AA7 A;  3AA1 B;  4KR8 A;  1G90 A;  4D64 A;  1THQ A;  2KXP A;  3POR A;  4UB8 O;  5ADX L;  2AXT O;  2J1N A;  4G76 A;  4O4U A;  2Y2X A;  3AA6 B;  4XNK A;  1QJ8 A;  4LSH A;  4PJ0 O;  5TIS O;  3UU2 A;  4AKR A;  4BUM X;  4D65 A;  3VE2 A;  2KDY A;  7PRN A;  2IWW A;  4KR4 A;  1BXW A;  4FZL A;  2JMM A;  4O3Y A;  1Q9G A;  2XE5 A;  4G75 A;  2Y7S A;  5G26 A; 
#chains in the Genus database with same CATH homology
 2KXP B;  2LHF A;  2K0L A;  3AA0 A;  4LSF A;  2K4T A;  2W81 C;  4D5U A;  3VY9 X;  4B61 A;  3T20 A;  2PRN A;  1GFQ A;  3WI4 A;  3AA1 A;  4AKM A;  2FGQ X;  3LK3 B;  4AYE C;  4GHB A;  3AA6 A;  3LK4 2;  4RL9 A;  4FES A;  1PRN A;  3HOE A;  2XE1 A;  3LK4 1;  3QRC A;  4FT6 A;  1BH3 A;  4GCS A;  3POQ A;  5T5F A;  1E54 A;  4AYM C;  3HWB A;  3AAA B;  4AYN A;  4FOZ A;  4E1T A;  2YNK A;  1OPF A;  3QRA A;  4GF4 A;  4RLC A;  3HOL A;  4AZL A;  1GFO A;  3VZW X;  1ORM A;  4FRX A;  4AYI D;  3C5O A;  4QQ1 A;  4E1S A;  4AYD C;  2ZFG A;  3SZD A;  2ERV A;  4FMS A;  2MHL A;  2GE4 A;  3LK3 A;  4RLB A;  4RJX A;  1MPF A;  3O0E A;  3V8U A;  4JFB A;  1OSM A;  3T24 A;  5PRN A;  3POX A;  2KC0 A;  3AAE A;  3T0S A;  3AAA A;  3LK2 B;  4N58 A;  4O3X B;  4F4B A;  1ZHY A;  1IZN A;  2XG6 A;  3RBH A;  1ZHZ A;  4LSI A;  5GV0 A;  8PRN A;  3SZV A;  3AAE B;  5EE2 A;  3TZG A;  3UAQ A;  2M06 A;  1HXU A;  2ZLD A;  3PQU A;  1H6S 1;  3DA3 A;  4LSE A;  2QTK A;  3PRN A;  2O4V A;  3POU A;  4GCP A;  1IZN B;  4KRA A;  4FUV A;  5DL7 A;  4Z3T A;  2N2M A;  2POR A;  1ZHX A;  5ADX K;  2ODJ A;  5AFU K;  3DA4 A;  3LK2 A;  3SYB A;  4O4X A;  1P4T A;  5IYU A;  4C69 X;  4GCQ A;  4O49 A;  5DL8 A;  4AFK A;  3NSG A;  4U9C A;  2KZ7 B;  4FSO A;  6PRN A;  1HXT A;  2OMF A;  1GFN A;  2XMX A;  2Y0K A;  2Y0H A;  3A2S X;  2XE2 A;  2XTQ A;  4N59 A;  3JTY A;  3PQS A;  1ZHW A;  2LFU A;  3EMN X;  1BT9 A;  4FZN A;  2XTR A;  4FZM A;  4AUI A;  1MM4 A;  3VY8 X;  3VZU X;  2FGR A;  3VE1 A;  1MM5 A;  1HXX A;  3UPG A;  4O3W A;  3AA7 B;  4FSP A;  3VZT X;  3K19 A;  4JCH A;  4O3Z A;  3WI5 A;  2X27 X;  2Y0L A;  5DL6 A;  2MNH A;  2KZ7 A;  5AFU L;  1YS5 A;  4AKR B;  3HW9 A;  2F1T A;  3FYX A;  3SY9 A;  1GFP A;  5JDP A;  3SY7 A;  1QJP A;  3SYS A;  3KVD D;  4RJW A;  1Q9F A;  2M07 A;  2N2L A;  2XE3 A;  4FRT A;  5FVN A;  2J4U P;  1ZHT A;  1PHO A;  3AA0 B;  4PUX A;  3GP6 A;  2F1V A;  2YPV A;  5D5D A;  2W80 C;  1GFM A;  3G7G A;  4XNL A;  5DL5 A;  1QJ9 A;  4KR8 A;  3AA7 A;  3AA1 B;  1G90 A;  4D64 A;  1THQ A;  2KXP A;  3POR A;  5ADX L;  4G76 A;  2J1N A;  4O4U A;  3UU2 A;  2Y2X A;  3AA6 B;  4XNK A;  1QJ8 A;  4LSH A;  4AKR A;  4BUM X;  4D65 A;  7PRN A;  3VE2 A;  2KDY A;  4KR4 A;  1BXW A;  4FZL A;  2JMM A;  4O3Y A;  1Q9G A;  2XE5 A;  4G75 A;  2Y7S A;  5G26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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