4FT6A

Crystal structure of pseudomonas aeruginosa occk9 (opdg)
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
387
structure length
387
Chain Sequence
EGFIEDASVSLGLRNLYFNRDFRQPGAAQSKQEEWAQGFLLQAKSGYTQGTLGLGVELIGQLGLKLDSSPDRAGSGLLPRHADGRAADDYARLGVAPKLKLSNTELKLGELLPELPILLRNDGRLLPQTFQGGMLTSREIAGLTLHGGQMRSLSQRNSSDHQDLSVDGRGGAFSDRFDYLGAEYRFNAERSQVGLWQARLQDIYRQDYYSLSHKQSFGGWRLGASVGLFDTRDEGAAKLGELENRALTGFFSATRGGHSLGAGYQRMYGDDGMLYIAGTSTPLVNDIQVRNFTSAGERSWQLRYDYDFVALGIPGLTAMARYASGAHARTKAMDDGRAWERDVDVAYVIQSGPLKNLGLRWRNAMLRSNHAADVDENRLILSYSLPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
molecule keywords Probable porin
total genus 106
structure length 387
sequence length 387
ec nomenclature
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4ft6A01
4RJWA 4C69X 4FOZA 3SZVA 4AUIA 4D65A 2FGQX 4D5UA 3JTYA 2ODJA 3POUA 2XE5A 3VZWX 5DL5A 3SYSA 3UPGA 3O0EA 4GCSA 4KRAA 1PHOA 3PRNA 2Y0KA 4LSEA 1OPFA 4FT6A 1GFPA 4D64A 1OSMA 3SY7A 3HWBA 1HXTA 3A2SX 4LSFA 1PRNA 3UU2A 2QTKA 4FRTA 1HXUA 5PRNA 3HW9A 5FVNA 3PORA 2XE2A 4KR4A 8PRNA 5JDPA 4FSOA 1GFNA 4FMSA 3POXA 3POQA 2OMFA 1GFOA 4LSIA 4BUMX 3K19A 3VY9X 4GCPA 2O4VA 3EMNX 2XE3A 1BH3A 3SYBA 3SY9A 2J4UP 1BT9A 4LSHA 2Y0HA 4GCQA 3VY8X 4RJXA 3SZDA 2ZLDA 2Y2XA 2XE1A 1E54A 3VZTX 3T24A 2ZFGA 5DL8A 4JFBA 3NSGA 3WI5A 3WI4A 5DL7A 2PRNA 4KR8A 2XG6A 1HXXA 2J1NA 2Y0LA 3T20A 4FRXA 6PRNA 1MPFA 1GFMA 2FGRA 3T0SA 2PORA 2K4TA 1GFQA 5DL6A 1H6S1 4FSPA 7PRNA 3VZUX 3FYXA
chains in the Genus database with same CATH superfamily
2ERVA 4RJWA 3V8UA 2W81C 4C69X 2R88A 3LK42 4FOZA 3SZVA 4AUIA 4D65A 5G3AA 2FGQX 2R4PA 2IWVA 2MNHA 4C00A 3JTYA 4CTDA 4D5UA 1G90A 1MM4A 2XTRA 2ODJA 2LHFA 1Q9FA 3A0HO 3LK3B 2XE5A 3POUA 4K3CA 4O3ZA 5ADXK 4N58A 3VZWX 1ZHTA 4G75A 4FUVA 5DL5A 1QJ8A 4GHBA 3SYSA 5B66O 4UB8O 3AAEA 3UPGA 5T5FA 3DWOX 3O0EA 3PGSA 4GCSA 3LK2A 3VE2A 5EE2A 4JCHA 4KRAA 4XNKA 1PHOA 2R4NA 4AKMA 4AYEC 3PRNA 5GV0A 3AA7B 2Y0KA 4LSEA 3LK41 4O3XB 4N74A 5H2FO 5G39A 3G7GA 1OPFA 2JQYA 2KC0A 2KZ7B 1T16A 3PQSA 1ORMA 4AYMC 2IWWA 1GFPA 4FT6A 5E79O 3RBHA 4D64A 1OSMA 1IZNA 3SY7A 2X9KA 5IYUA 4AKRA 3HWBA 4IL6O 3AAAB 4C4VA 1IZNB 4AZLA 1HXTA 3BS0A 3PGRA 3A2SX 4LSFA 1Q9GA 4PR7A 1PRNA 3UU2A 1QJPA 2QTKA 4FRTA 4AFKA 4O3WA 3AA0A 1HXUA 5PRNA 1ZHYA 3AA1A 3AA6A 4E1SA 2KXPB 3HW9A 2XMXA 4O4XA 3HOEA 4G76A 5FVNA 2F1CX 3KVDD 3PORA 5GTIO 1T1LA 4UB6O 3TZGA 3UAQA 2XE2A 4O49A 5B5EO 4GF4A 4KR4A 4FESA 8PRNA 5JDPA 4FSOA 1GFNA 3QRCA 4FMSA 3BRYA 3PF1A 3POXA 4QQ1A 2WJRA 3HOLA 4U9CA 3POQA 2OMFA 3JCUO 1ZHXA 5ADXL 2LFUA 5AFUK 5KAFO 2R89A 2KXPA 1GFOA 4LSIA 2R4LA 4FZNA 4BUMX 2N2LA 2X27X 1THQA 3DZMA 3KZIO 3K19A 4RLCA 3VY9X 3BRZA 4GCPA 1ZHZA 2XTQA 3DWNA 4FZLA 4O4UA 1MM5A 2O4VA 3EMNX 1YS5A 2M06A 2JMMA 3C5OA 3NJTA 4AYDC 2XE3A 1BH3A 2N2MA 3AAAA 4PJ0O 5TISO 3A0BO 3SYBA 3SY9A 1BT9A 4LSHA 2R4OA 3LK3A 3QRAA 4Z3TA 2J4UP 2Y0HA 2W80C 4GCQA 3GP6A 4C4VB 3VY8X 3FYXA 4XNLA 4RJXA 4O3YA 2ZLDA 2Y2XA 2F1VA 2XE1A 5G26A 3SZDA 1E54A 3VE1A 2M07A 3WU2O 3VZTX 3T24A 3AA0B 2ZFGA 5DL8A 3DA3A 1ZHWA 2YPVA 4JFBA 3NSGA 3WI5A 3WI4A 5DL7A 3AAEB 2PRNA 4F4BA 3AA7A 2K0LA 4AYNA 3AA1B 3AA6B 1P4TA 4KR8A 4RLBA 2XG6A 3LK2B 4N59A 4K3BA 2WVPA 4RL9A 1HXXA 5G38A 2J1NA 1QJ9A 2Y0LA 5KAIO 5AFUL 2KDYA 4FRXA 5GTHO 3T20A 2Y7SA 4N75A 2GE4A 1S5LO 5D5DA 3PGUA 1MPFA 2R8AA 2KZ7A 6PRNA 1GFMA 4FQEA 4AKRB 4AYID 2FGRA 3T0SA 2PORA 2K4TA 3PQUA 2YNKA 1BXWA 4FZMA 2F1TA 4B61A 1GFQA 4PUXA 5DL6A 1H6S1 3DA4A 4FSPA 3VZUX 7PRNA 2WJQA 2AXTO 2MHLA 4E1TA
chains in the Genus database with same CATH topology
2ERVA 4RJWA 3V8UA 2W81C 4C69X 3LK42 4FOZA 3SZVA 4AUIA 4D65A 2FGQX 1G90A 2MNHA 4D5UA 3JTYA 1MM4A 2XTRA 2ODJA 2LHFA 1Q9FA 3LK3B 3POUA 2XE5A 4O3ZA 5ADXK 4N58A 3VZWX 1ZHTA 4G75A 4FUVA 5DL5A 1QJ8A 4GHBA 3SYSA 3AAEA 3UPGA 5T5FA 3O0EA 4GCSA 3VE2A 3LK2A 5EE2A 4JCHA 4KRAA 4XNKA 1PHOA 4AKMA 4AYEC 5GV0A 3PRNA 3AA7B 2Y0KA 4LSEA 3LK41 4O3XB 3G7GA 1OPFA 2KC0A 3PQSA 2KZ7B 4AYMC 1ORMA 1GFPA 4FT6A 3RBHA 4D64A 1OSMA 1IZNA 3SY7A 5IYUA 4AKRA 3HWBA 3AAAB 1IZNB 4AZLA 1HXTA 3A2SX 4LSFA 1Q9GA 1PRNA 3UU2A 1QJPA 2QTKA 4FRTA 4AFKA 4O3WA 3AA0A 1HXUA 5PRNA 1ZHYA 3AA1A 3AA6A 4E1SA 2KXPB 3HW9A 2XMXA 4O4XA 3HOEA 4G76A 5FVNA 3KVDD 3PORA 3TZGA 3UAQA 2XE2A 4O49A 4GF4A 4KR4A 4FESA 8PRNA 5JDPA 4FSOA 1GFNA 3QRCA 4FMSA 3POXA 4QQ1A 3HOLA 4U9CA 3POQA 2OMFA 1ZHXA 5ADXL 2LFUA 5AFUK 2KXPA 1GFOA 4LSIA 4FZNA 4BUMX 2N2LA 2X27X 1THQA 3K19A 4RLCA 3VY9X 4GCPA 1ZHZA 2XTQA 4FZLA 4O4UA 1MM5A 2O4VA 3EMNX 1YS5A 2M06A 2JMMA 3C5OA 4AYDC 2XE3A 1BH3A 2N2MA 3AAAA 3SYBA 4Z3TA 3SY9A 2J4UP 1BT9A 4LSHA 3LK3A 3QRAA 2Y0HA 2W80C 4GCQA 3GP6A 3VY8X 4XNLA 4RJXA 4O3YA 2ZLDA 2Y2XA 2XE1A 2F1VA 5G26A 3SZDA 1E54A 3VE1A 2M07A 3VZTX 3T24A 3AA0B 2ZFGA 5DL8A 3DA3A 1ZHWA 2YPVA 4JFBA 3NSGA 3WI5A 3WI4A 5DL7A 3AAEB 2PRNA 4F4BA 3AA7A 2K0LA 4AYNA 3AA1B 3AA6B 1P4TA 4KR8A 4RLBA 2XG6A 3LK2B 4N59A 4RL9A 1HXXA 2J1NA 1QJ9A 2Y0LA 5AFUL 2KDYA 4FRXA 3T20A 2Y7SA 2GE4A 6PRNA 5D5DA 1MPFA 2KZ7A 1GFMA 4AYID 4AKRB 2FGRA 3T0SA 2PORA 2K4TA 3PQUA 2YNKA 1BXWA 4FZMA 2F1TA 4B61A 1GFQA 4PUXA 5DL6A 1H6S1 3DA4A 4FSPA 3VZUX 7PRNA 2MHLA 3FYXA 4E1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RJW A;  4C69 X;  4FOZ A;  3SZV A;  4AUI A;  4D65 A;  2FGQ X;  4D5U A;  3JTY A;  2ODJ A;  3POU A;  2XE5 A;  3VZW X;  5DL5 A;  3SYS A;  3UPG A;  3O0E A;  4GCS A;  4KRA A;  1PHO A;  3PRN A;  2Y0K A;  4LSE A;  1OPF A;  4FT6 A;  1GFP A;  4D64 A;  1OSM A;  3SY7 A;  3HWB A;  1HXT A;  3A2S X;  4LSF A;  1PRN A;  3UU2 A;  2QTK A;  4FRT A;  1HXU A;  5PRN A;  3HW9 A;  5FVN A;  3POR A;  2XE2 A;  4KR4 A;  8PRN A;  5JDP A;  4FSO A;  1GFN A;  4FMS A;  3POX A;  3POQ A;  2OMF A;  1GFO A;  4LSI A;  4BUM X;  3K19 A;  3VY9 X;  4GCP A;  2O4V A;  3EMN X;  2XE3 A;  1BH3 A;  3SYB A;  3SY9 A;  2J4U P;  1BT9 A;  4LSH A;  2Y0H A;  4GCQ A;  3VY8 X;  4RJX A;  3SZD A;  2ZLD A;  2Y2X A;  2XE1 A;  1E54 A;  3VZT X;  3T24 A;  2ZFG A;  5DL8 A;  4JFB A;  3NSG A;  3WI5 A;  3WI4 A;  5DL7 A;  2PRN A;  4KR8 A;  2XG6 A;  1HXX A;  2J1N A;  2Y0L A;  3T20 A;  4FRX A;  6PRN A;  1MPF A;  1GFM A;  2FGR A;  3T0S A;  2POR A;  2K4T A;  1GFQ A;  5DL6 A;  1H6S 1;  4FSP A;  7PRN A;  3VZU X;  3FYX A; 
#chains in the Genus database with same CATH topology
 2ERV A;  4RJW A;  3V8U A;  2W81 C;  4C69 X;  2R88 A;  3LK4 2;  4FOZ A;  3SZV A;  4AUI A;  4D65 A;  5G3A A;  2FGQ X;  2R4P A;  2IWV A;  2MNH A;  4C00 A;  3JTY A;  4CTD A;  4D5U A;  1G90 A;  1MM4 A;  2XTR A;  2ODJ A;  2LHF A;  1Q9F A;  3A0H O;  3LK3 B;  2XE5 A;  3POU A;  4K3C A;  4O3Z A;  5ADX K;  4N58 A;  3VZW X;  1ZHT A;  4G75 A;  4FUV A;  5DL5 A;  1QJ8 A;  4GHB A;  3SYS A;  5B66 O;  4UB8 O;  3AAE A;  3UPG A;  5T5F A;  3DWO X;  3O0E A;  3PGS A;  4GCS A;  3LK2 A;  3VE2 A;  5EE2 A;  4JCH A;  4KRA A;  4XNK A;  1PHO A;  2R4N A;  4AKM A;  4AYE C;  3PRN A;  5GV0 A;  3AA7 B;  2Y0K A;  4LSE A;  3LK4 1;  4O3X B;  4N74 A;  5H2F O;  5G39 A;  3G7G A;  1OPF A;  2JQY A;  2KC0 A;  2KZ7 B;  1T16 A;  3PQS A;  1ORM A;  4AYM C;  2IWW A;  1GFP A;  4FT6 A;  5E79 O;  3RBH A;  4D64 A;  1OSM A;  1IZN A;  3SY7 A;  2X9K A;  5IYU A;  4AKR A;  3HWB A;  4IL6 O;  3AAA B;  4C4V A;  1IZN B;  4AZL A;  1HXT A;  3BS0 A;  3PGR A;  3A2S X;  4LSF A;  1Q9G A;  4PR7 A;  1PRN A;  3UU2 A;  1QJP A;  2QTK A;  4FRT A;  4AFK A;  4O3W A;  3AA0 A;  1HXU A;  5PRN A;  1ZHY A;  3AA1 A;  3AA6 A;  4E1S A;  2KXP B;  3HW9 A;  2XMX A;  4O4X A;  3HOE A;  4G76 A;  5FVN A;  2F1C X;  3KVD D;  3POR A;  5GTI O;  1T1L A;  4UB6 O;  3TZG A;  3UAQ A;  2XE2 A;  4O49 A;  5B5E O;  4GF4 A;  4KR4 A;  4FES A;  8PRN A;  5JDP A;  4FSO A;  1GFN A;  3QRC A;  4FMS A;  3BRY A;  3PF1 A;  3POX A;  4QQ1 A;  2WJR A;  3HOL A;  4U9C A;  3POQ A;  2OMF A;  3JCU O;  1ZHX A;  5ADX L;  2LFU A;  5AFU K;  5KAF O;  2R89 A;  2KXP A;  1GFO A;  4LSI A;  2R4L A;  4FZN A;  4BUM X;  2N2L A;  2X27 X;  1THQ A;  3DZM A;  3KZI O;  3K19 A;  4RLC A;  3VY9 X;  3BRZ A;  4GCP A;  1ZHZ A;  2XTQ A;  3DWN A;  4FZL A;  4O4U A;  1MM5 A;  2O4V A;  3EMN X;  1YS5 A;  2M06 A;  2JMM A;  3C5O A;  3NJT A;  4AYD C;  2XE3 A;  1BH3 A;  2N2M A;  3AAA A;  4PJ0 O;  5TIS O;  3A0B O;  3SYB A;  3SY9 A;  1BT9 A;  4LSH A;  2R4O A;  3LK3 A;  3QRA A;  4Z3T A;  2J4U P;  2Y0H A;  2W80 C;  4GCQ A;  3GP6 A;  4C4V B;  3VY8 X;  3FYX A;  4XNL A;  4RJX A;  4O3Y A;  2ZLD A;  2Y2X A;  2F1V A;  2XE1 A;  5G26 A;  3SZD A;  1E54 A;  3VE1 A;  2M07 A;  3WU2 O;  3VZT X;  3T24 A;  3AA0 B;  2ZFG A;  5DL8 A;  3DA3 A;  1ZHW A;  2YPV A;  4JFB A;  3NSG A;  3WI5 A;  3WI4 A;  5DL7 A;  3AAE B;  2PRN A;  4F4B A;  3AA7 A;  2K0L A;  4AYN A;  3AA1 B;  3AA6 B;  1P4T A;  4KR8 A;  4RLB A;  2XG6 A;  3LK2 B;  4N59 A;  4K3B A;  2WVP A;  4RL9 A;  1HXX A;  5G38 A;  2J1N A;  1QJ9 A;  2Y0L A;  5KAI O;  5AFU L;  2KDY A;  4FRX A;  5GTH O;  3T20 A;  2Y7S A;  4N75 A;  2GE4 A;  1S5L O;  5D5D A;  3PGU A;  1MPF A;  2R8A A;  2KZ7 A;  6PRN A;  1GFM A;  4FQE A;  4AKR B;  4AYI D;  2FGR A;  3T0S A;  2POR A;  2K4T A;  3PQU A;  2YNK A;  1BXW A;  4FZM A;  2F1T A;  4B61 A;  1GFQ A;  4PUX A;  5DL6 A;  1H6S 1;  3DA4 A;  4FSP A;  3VZU X;  7PRN A;  2WJQ A;  2AXT O;  2MHL A;  4E1T A; 
#chains in the Genus database with same CATH homology
 2ERV A;  4RJW A;  3V8U A;  2W81 C;  4C69 X;  3LK4 2;  4FOZ A;  3SZV A;  4AUI A;  4D65 A;  2FGQ X;  1G90 A;  2MNH A;  4D5U A;  3JTY A;  1MM4 A;  2XTR A;  2ODJ A;  2LHF A;  1Q9F A;  3LK3 B;  3POU A;  2XE5 A;  4O3Z A;  5ADX K;  4N58 A;  3VZW X;  1ZHT A;  4G75 A;  4FUV A;  5DL5 A;  1QJ8 A;  4GHB A;  3SYS A;  3AAE A;  3UPG A;  5T5F A;  3O0E A;  4GCS A;  3VE2 A;  3LK2 A;  5EE2 A;  4JCH A;  4KRA A;  4XNK A;  1PHO A;  4AKM A;  4AYE C;  5GV0 A;  3PRN A;  3AA7 B;  2Y0K A;  4LSE A;  3LK4 1;  4O3X B;  3G7G A;  1OPF A;  2KC0 A;  3PQS A;  2KZ7 B;  4AYM C;  1ORM A;  1GFP A;  4FT6 A;  3RBH A;  4D64 A;  1OSM A;  1IZN A;  3SY7 A;  5IYU A;  4AKR A;  3HWB A;  3AAA B;  1IZN B;  4AZL A;  1HXT A;  3A2S X;  4LSF A;  1Q9G A;  1PRN A;  3UU2 A;  1QJP A;  2QTK A;  4FRT A;  4AFK A;  4O3W A;  3AA0 A;  1HXU A;  5PRN A;  1ZHY A;  3AA1 A;  3AA6 A;  4E1S A;  2KXP B;  3HW9 A;  2XMX A;  4O4X A;  3HOE A;  4G76 A;  5FVN A;  3KVD D;  3POR A;  3TZG A;  3UAQ A;  2XE2 A;  4O49 A;  4GF4 A;  4KR4 A;  4FES A;  8PRN A;  5JDP A;  4FSO A;  1GFN A;  3QRC A;  4FMS A;  3POX A;  4QQ1 A;  3HOL A;  4U9C A;  3POQ A;  2OMF A;  1ZHX A;  5ADX L;  2LFU A;  5AFU K;  2KXP A;  1GFO A;  4LSI A;  4FZN A;  4BUM X;  2N2L A;  2X27 X;  1THQ A;  3K19 A;  4RLC A;  3VY9 X;  4GCP A;  1ZHZ A;  2XTQ A;  4FZL A;  4O4U A;  1MM5 A;  2O4V A;  3EMN X;  1YS5 A;  2M06 A;  2JMM A;  3C5O A;  4AYD C;  2XE3 A;  1BH3 A;  2N2M A;  3AAA A;  3SYB A;  4Z3T A;  3SY9 A;  2J4U P;  1BT9 A;  4LSH A;  3LK3 A;  3QRA A;  2Y0H A;  2W80 C;  4GCQ A;  3GP6 A;  3VY8 X;  4XNL A;  4RJX A;  4O3Y A;  2ZLD A;  2Y2X A;  2XE1 A;  2F1V A;  5G26 A;  3SZD A;  1E54 A;  3VE1 A;  2M07 A;  3VZT X;  3T24 A;  3AA0 B;  2ZFG A;  5DL8 A;  3DA3 A;  1ZHW A;  2YPV A;  4JFB A;  3NSG A;  3WI5 A;  3WI4 A;  5DL7 A;  3AAE B;  2PRN A;  4F4B A;  3AA7 A;  2K0L A;  4AYN A;  3AA1 B;  3AA6 B;  1P4T A;  4KR8 A;  4RLB A;  2XG6 A;  3LK2 B;  4N59 A;  4RL9 A;  1HXX A;  2J1N A;  1QJ9 A;  2Y0L A;  5AFU L;  2KDY A;  4FRX A;  3T20 A;  2Y7S A;  2GE4 A;  6PRN A;  5D5D A;  1MPF A;  2KZ7 A;  1GFM A;  4AYI D;  4AKR B;  2FGR A;  3T0S A;  2POR A;  2K4T A;  3PQU A;  2YNK A;  1BXW A;  4FZM A;  2F1T A;  4B61 A;  1GFQ A;  4PUX A;  5DL6 A;  1H6S 1;  3DA4 A;  4FSP A;  3VZU X;  7PRN A;  2MHL A;  3FYX A;  4E1T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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