4FVGA

Spfh domain of mouse stomatin (crystal form 3)
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
109
structure length
109
Chain Sequence
VDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Stomatin
publication title A stomatin dimer modulates the activity of acid-sensing ion channels.
pubmed doi rcsb
source organism Mus musculus
total genus 35
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2012-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.479.30 Alpha Beta 2-Layer Sandwich Tetrahydropterin Synthase; Chain A Tetrahydropterin Synthase; Chain A 4fvgA00
1WINA 4FVJA 4FVFA 2RPBA 3BK6A 4FVGA
chains in the Genus database with same CATH superfamily
3M0NA 1Y13A 1XB2B 1TFEA 4FVFA 1B66A 4NTNA 1B6ZA 3LX3A 1AIPC 3QN0A 2DTTA 1WINA 2RPBA 4NTMA 3JYGA 3BK6A 4Q7JA 4FVJA 1GTQA 4NTKA 4FVGA 3LZEA 2DJ6A 2A0SA 1EFUB 2OBAA 3QNAA 3D7JA 2G64A 3I2BA 3QN9A
chains in the Genus database with same CATH topology
3M0NA 1Y13A 4FVFA 1B66A 4NTNA 1B6ZA 3LX3A 3QN0A 2DTTA 1WINA 2RPBA 4NTMA 3JYGA 3BK6A 4FVJA 1GTQA 4NTKA 4FVGA 3LZEA 2DJ6A 2A0SA 2OBAA 3QNAA 3D7JA 2G64A 3I2BA 3QN9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WIN A;  4FVJ A;  4FVF A;  2RPB A;  3BK6 A;  4FVG A; 
#chains in the Genus database with same CATH topology
 3M0N A;  1Y13 A;  1XB2 B;  1TFE A;  4FVF A;  1B66 A;  4NTN A;  1B6Z A;  3LX3 A;  1AIP C;  3QN0 A;  2DTT A;  1WIN A;  2RPB A;  4NTM A;  3JYG A;  3BK6 A;  4Q7J A;  4FVJ A;  1GTQ A;  4NTK A;  4FVG A;  3LZE A;  2DJ6 A;  2A0S A;  1EFU B;  2OBA A;  3QNA A;  3D7J A;  2G64 A;  3I2B A;  3QN9 A; 
#chains in the Genus database with same CATH homology
 3M0N A;  1Y13 A;  4FVF A;  1B66 A;  4NTN A;  1B6Z A;  3LX3 A;  3QN0 A;  2DTT A;  1WIN A;  2RPB A;  4NTM A;  3JYG A;  3BK6 A;  4FVJ A;  1GTQ A;  4NTK A;  4FVG A;  3LZE A;  2DJ6 A;  2A0S A;  2OBA A;  3QNA A;  3D7J A;  2G64 A;  3I2B A;  3QN9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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