4FXIA

Crystal structure of the isolated e. coli rele toxin, p21 form
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
94
structure length
93
Chain Sequence
AYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDYKIKLRSSGYRLVYQVIDEKVVVFVISVGKAERSEVYSEAVKRIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords mRNA interferase RelE
publication title The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity.
pubmed doi rcsb
source organism Escherichia coli
total genus 31
structure length 93
sequence length 94
chains with identical sequence B, C
ec nomenclature ec 3.1.-.-:
pdb deposition date 2012-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05016 ParE_toxin ParE toxin of type II toxin-antitoxin system, parDE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 4fxiA00
3G5OB 5CZFC 5CW7B 4NRNA 2KHEA 4ML2A 2KC8A 4MMGA 2A6QE 5IWHA 4YY3Y 4LTTA 4MCXB 5CEGB 1WMIA 2OTRA 4MMJA 4ML0B 3OEIC 2A6RA 2KC9A 5IXLA 4FXIA 4Q2UB 3BPQB 2A6SA 4LSYA 4PX8A 4FXED 4MCTB 1Z8MA 4FXHA 4LS4A 3KXEA 5CZEB
chains in the Genus database with same CATH superfamily
3G5OB 5CZFC 5CW7B 1XQBA 2KHEA 4NRNA 2PD0A 3HI2B 4ML2A 2KC8A 2FHZB 2A6QE 4MMGA 5IWHA 4YY3Y 4LTTA 4MCXB 5CEGB 2DFXE 4FXHA 1WMIA 2OTRA 4MMJA 4ML0B 3KXEA 2A6RA 2DJHA 2KC9A 3OEIC 3VJ7A 5IXLA 4FXIA 4Q2UB 3BPQB 4LSYA 3AO9A 4PX8A 4FBDA 4FXED 4MCTB 1Z8MA 2A8KA 4LS4A 2A6SA 5CZEB
chains in the Genus database with same CATH topology
3G5OB 5CZFC 5CW7B 4NRNA 2KHEA 4ML2A 2KC8A 4MMGA 2A6QE 5IWHA 4YY3Y 4LTTA 4MCXB 5CEGB 1WMIA 2OTRA 4MMJA 4ML0B 3OEIC 2A6RA 2KC9A 5IXLA 4FXIA 4Q2UB 3BPQB 2A6SA 4LSYA 4PX8A 4FXED 4MCTB 1Z8MA 4FXHA 4LS4A 3KXEA 5CZEB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G5O B;  5CZF C;  5CW7 B;  4NRN A;  2KHE A;  4ML2 A;  2KC8 A;  4MMG A;  2A6Q E;  5IWH A;  4YY3 Y;  4LTT A;  4MCX B;  5CEG B;  1WMI A;  2OTR A;  4MMJ A;  4ML0 B;  3OEI C;  2A6R A;  2KC9 A;  5IXL A;  4FXI A;  4Q2U B;  3BPQ B;  2A6S A;  4LSY A;  4PX8 A;  4FXE D;  4MCT B;  1Z8M A;  4FXH A;  4LS4 A;  3KXE A;  5CZE B; 
#chains in the Genus database with same CATH topology
 3G5O B;  5CZF C;  5CW7 B;  1XQB A;  2KHE A;  4NRN A;  2PD0 A;  3HI2 B;  4ML2 A;  2KC8 A;  2FHZ B;  2A6Q E;  4MMG A;  5IWH A;  4YY3 Y;  4LTT A;  4MCX B;  5CEG B;  2DFX E;  4FXH A;  1WMI A;  2OTR A;  4MMJ A;  4ML0 B;  3KXE A;  2A6R A;  2DJH A;  2KC9 A;  3OEI C;  3VJ7 A;  5IXL A;  4FXI A;  4Q2U B;  3BPQ B;  4LSY A;  3AO9 A;  4PX8 A;  4FBD A;  4FXE D;  4MCT B;  1Z8M A;  2A8K A;  4LS4 A;  2A6S A;  5CZE B; 
#chains in the Genus database with same CATH homology
 3G5O B;  5CZF C;  5CW7 B;  4NRN A;  2KHE A;  4ML2 A;  2KC8 A;  4MMG A;  2A6Q E;  5IWH A;  4YY3 Y;  4LTT A;  4MCX B;  5CEG B;  1WMI A;  2OTR A;  4MMJ A;  4ML0 B;  3OEI C;  2A6R A;  2KC9 A;  5IXL A;  4FXI A;  4Q2U B;  3BPQ B;  2A6S A;  4LSY A;  4PX8 A;  4FXE D;  4MCT B;  1Z8M A;  4FXH A;  4LS4 A;  3KXE A;  5CZE B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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