4FZOA

Crystal structure of the apo-form uranyl binding protein
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
82
structure length
82
Chain Sequence
SNALDCRERIEKDLEDLEKELMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAEGLTDSLRMLHRIIEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords uranyl binding protein
publication title A protein engineered to bind uranyl selectively and with femtomolar affinity.
pubmed doi rcsb
source organism Methanothermobacter thermautotrophicus
molecule tags Unknown function
total genus 37
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04010 DUF357 Protein of unknown function (DUF357)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.90 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 AF1782-like 4fzoA00
2YL9A 2YL8A 2JNKA 2YL6A 2OZNB 4AZ7A 4AZ5A 2OO2A 4AZHA 4AZGA 2YLAA 4AZBA 2PMRA 2YLLA 4AZCB 2YL5A 4AZCA 4AZ6A 4AZIA 4FZOA 3RPMA 4FZPA
chains in the Genus database with same CATH superfamily
3ABHA 2C08A 4BNEA 4EZOA 2JNKA 4EZVA 4UDXX 1R33A 2YLAA 2FYVA 4AZCB 3BVVA 3DX1A 3QNIA 4G6QA 3EJRA 1TQWA 3LMFA 3FD9A 4JL9A 3HAJA 4IWQA 3D52A 3SYVA 2PY6A 1QWUA 1OA1A 3ER9B 3BVUA 4H8SA 2Z0NA 4IM3A 2WINM 3BUDA 2X3WA 3T47A 3EJPA 1QX1A 3A98A 1GN9A 4R5JA 2ELBA 2RAKA 3D4YA 4AKVA 1W9MA 3SOGA 4AZ5A 5E84A 4JWCA 1O7DC 3B53X 5TKYA 4I1QA 1HTYA 5C5BB 2X5CA 3QWEA 2X3VA 2WYIA 4R5KA 4EZZA 1TQSA 2N3KA 4IWOA 3DDGA 2RAIA 3ERCC 2ALWA 1MJGA 3OWGA 1E1DA 1SU6A 3DX0A 1LQ7A 3CVRA 3VEBA 2F7OA 4B9QA 3RV0A 2RAJA 2EFKA 1JQKA 5FIGA 3D2FA 3DX2A 3O3OB 1HWWA 3OHXM 4JNFA 2V0OA 4IM0A 4JWDA 4EZXA 4FZSA 4UDYX 4H6IA 1X04A 4EZWA 1R34A 4EZYA 4DCNC 2OZNB 2RT6A 3UITA 4R5IA 4AZHA 2GF4A 1I4TA 3O3NB 1E9VA 1GNTA 2FICA 2YL5A 3PLTA 1PS3A 3HAHA 3QA8A 4DYLA 4AVMA 3EJSA 4IW0A 3T48A 1R5EA 1Y2OA 3CZSA 1GNLA 2JNSA 4E3CA 4WPEA 1SU8A 3LLLA 3QE6A 3L3OM 3F7WA 1I49A 2OBMA 4JN4A 4PO2A 1TQTA 3C7NA 2QFFA 4AZCA 3DX4A 2Q12A 4EZRA 4KIKB 5KBPA 3CAZA 3KAWA 3I01A 3B51X 3HAIA 3QNJA 1TQUA 1ZWWA 4JWIA 4R5GA 3D2EA 3B52X 2OW6A 2GA9D 2D1LA 1E2UA 4FZOA 1OA0A 3BVTA 2YL9A 3EJUA 4NPHA 4D8JA 4H6HA 1X03A 4EZQA 1UPXA 1YWMA 4AZBA 2YI8A 1U00A 3BUBA 2Z0OA 5C5BA 1OAOA 1DKZA 4JWEA 3BLBA 2F7QA 4AZGA 2Z8YA 4JNEA 4EZPA 3LVTA 2YLLA 2EX3B 1I4DA 2WYHA 4HR1B 3Q0KA 2YIAA 1I4LA 2F7RA 1O7DB 4EZSA 2F18A 3DPPA 2QXLA 1WDZA 2YL6A 2MI7A 2OO2A 3CV5A 4M0MA 3ACOA 3KAVA 3DPQA 3BVXA 3OK8A 1SUFA 3T46A 4AZ6A 2D4CA 2EFLA 3RPMA 4FZPA 2LM0A 4E81A 4F01A 4AZ7A 4EZNA 1DKYA 3D50A 3BUPA 4HY9A 3RV1A 4EZTA 1TQVA 3BVWA 1QWNA 2OBLA 2O0I1 3BUIA 2YIBA 1HXKA 1SU7A 3DDFA 3DPOA 3L3PA 3VEAA 3BUQA 4NSWA 3ER8C 3D4ZA 2LXYA 2Z0VA 2PMRA 3G9GA 2YIVX 1ZYLA 3DYTA 4R5LA 3KDRA 2F1AA 4FM3A 4KIKA 3Q84A 3I04A 4IWPA 3CKDA 3EJTA 2F7PA 2NCZA 2QKWA 3I39X 3ZEDA 2F1BA 2YL8A 2X3XA 3EJQA 3D51A 3CZNA 3O3MB 2EWFA 2YKTA 4HYBA 3VKHA 1URUA 3GI7A 2KHOA 3T4AG 2ND1A 2GAFD 4EZUA 3T49A 2YI9A 2OW7A 2ZXQA 3M3WA 4F00A 2Q13A 4NQIA 5FLEX 2ND0A 1DKXA 4WPCA 4JLCA 4IM2A 3DX3A 4HR1A 4AZIA 4ATMA 3I2WA
chains in the Genus database with same CATH topology
2YL9A 2YL8A 2JNKA 2YL6A 2OZNB 4AZ7A 4AZ5A 2OO2A 4AZHA 4AZGA 2YLAA 4AZBA 2PMRA 2YLLA 4AZCB 2YL5A 4AZCA 4AZ6A 4AZIA 4FZOA 3RPMA 4FZPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YL9 A;  2YL8 A;  2JNK A;  2YL6 A;  2OZN B;  4AZ7 A;  4AZ5 A;  2OO2 A;  4AZH A;  4AZG A;  2YLA A;  4AZB A;  2PMR A;  2YLL A;  4AZC B;  2YL5 A;  4AZC A;  4AZ6 A;  4AZI A;  4FZO A;  3RPM A;  4FZP A; 
#chains in the Genus database with same CATH topology
 3ABH A;  2C08 A;  4BNE A;  4EZO A;  2JNK A;  4EZV A;  4UDX X;  1R33 A;  2YLA A;  2FYV A;  4AZC B;  3BVV A;  3DX1 A;  3QNI A;  4G6Q A;  3EJR A;  1TQW A;  3LMF A;  3FD9 A;  4JL9 A;  3HAJ A;  4IWQ A;  3D52 A;  3SYV A;  2PY6 A;  1QWU A;  1OA1 A;  3ER9 B;  3BVU A;  4H8S A;  2Z0N A;  4IM3 A;  2WIN M;  3BUD A;  2X3W A;  3T47 A;  3EJP A;  1QX1 A;  3A98 A;  1GN9 A;  4R5J A;  2ELB A;  2RAK A;  3D4Y A;  4AKV A;  1W9M A;  3SOG A;  4AZ5 A;  5E84 A;  4JWC A;  1O7D C;  3B53 X;  5TKY A;  4I1Q A;  1HTY A;  5C5B B;  2X5C A;  3QWE A;  2X3V A;  2WYI A;  4R5K A;  4EZZ A;  1TQS A;  2N3K A;  4IWO A;  3DDG A;  2RAI A;  3ERC C;  2ALW A;  1MJG A;  3OWG A;  1E1D A;  1SU6 A;  3DX0 A;  1LQ7 A;  3CVR A;  3VEB A;  2F7O A;  4B9Q A;  3RV0 A;  2RAJ A;  2EFK A;  1JQK A;  5FIG A;  3D2F A;  3DX2 A;  3O3O B;  1HWW A;  3OHX M;  4JNF A;  2V0O A;  4IM0 A;  4JWD A;  4EZX A;  4FZS A;  4UDY X;  4H6I A;  1X04 A;  4EZW A;  1R34 A;  4EZY A;  4DCN C;  2OZN B;  2RT6 A;  3UIT A;  4R5I A;  4AZH A;  2GF4 A;  1I4T A;  3O3N B;  1E9V A;  1GNT A;  2FIC A;  2YL5 A;  3PLT A;  1PS3 A;  3HAH A;  3QA8 A;  4DYL A;  4AVM A;  3EJS A;  4IW0 A;  3T48 A;  1R5E A;  1Y2O A;  3CZS A;  1GNL A;  2JNS A;  4E3C A;  4WPE A;  1SU8 A;  3LLL A;  3QE6 A;  3L3O M;  3F7W A;  1I49 A;  2OBM A;  4JN4 A;  4PO2 A;  1TQT A;  3C7N A;  2QFF A;  4AZC A;  3DX4 A;  2Q12 A;  4EZR A;  4KIK B;  5KBP A;  3CAZ A;  3KAW A;  3I01 A;  3B51 X;  3HAI A;  3QNJ A;  1TQU A;  1ZWW A;  4JWI A;  4R5G A;  3D2E A;  3B52 X;  2OW6 A;  2GA9 D;  2D1L A;  1E2U A;  4FZO A;  1OA0 A;  3BVT A;  2YL9 A;  3EJU A;  4NPH A;  4D8J A;  4H6H A;  1X03 A;  4EZQ A;  1UPX A;  1YWM A;  4AZB A;  2YI8 A;  1U00 A;  3BUB A;  2Z0O A;  5C5B A;  1OAO A;  1DKZ A;  4JWE A;  3BLB A;  2F7Q A;  4AZG A;  2Z8Y A;  4JNE A;  4EZP A;  3LVT A;  2YLL A;  2EX3 B;  1I4D A;  2WYH A;  4HR1 B;  3Q0K A;  2YIA A;  1I4L A;  2F7R A;  1O7D B;  4EZS A;  2F18 A;  3DPP A;  2QXL A;  1WDZ A;  2YL6 A;  2MI7 A;  2OO2 A;  3CV5 A;  4M0M A;  3ACO A;  3KAV A;  3DPQ A;  3BVX A;  3OK8 A;  1SUF A;  3T46 A;  4AZ6 A;  2D4C A;  2EFL A;  3RPM A;  4FZP A;  2LM0 A;  4E81 A;  4F01 A;  4AZ7 A;  4EZN A;  1DKY A;  3D50 A;  3BUP A;  4HY9 A;  3RV1 A;  4EZT A;  1TQV A;  3BVW A;  1QWN A;  2OBL A;  2O0I 1;  3BUI A;  2YIB A;  1HXK A;  1SU7 A;  3DDF A;  3DPO A;  3L3P A;  3VEA A;  3BUQ A;  4NSW A;  3ER8 C;  3D4Z A;  2LXY A;  2Z0V A;  2PMR A;  3G9G A;  2YIV X;  1ZYL A;  3DYT A;  4R5L A;  3KDR A;  2F1A A;  4FM3 A;  4KIK A;  3Q84 A;  3I04 A;  4IWP A;  3CKD A;  3EJT A;  2F7P A;  2NCZ A;  2QKW A;  3I39 X;  3ZED A;  2F1B A;  2YL8 A;  2X3X A;  3EJQ A;  3D51 A;  3CZN A;  3O3M B;  2EWF A;  2YKT A;  4HYB A;  3VKH A;  1URU A;  3GI7 A;  2KHO A;  3T4A G;  2ND1 A;  2GAF D;  4EZU A;  3T49 A;  2YI9 A;  2OW7 A;  2ZXQ A;  3M3W A;  4F00 A;  2Q13 A;  4NQI A;  5FLE X;  2ND0 A;  1DKX A;  4WPC A;  4JLC A;  4IM2 A;  3DX3 A;  4HR1 A;  4AZI A;  4ATM A;  3I2W A; 
#chains in the Genus database with same CATH homology
 2YL9 A;  2YL8 A;  2JNK A;  2YL6 A;  2OZN B;  4AZ7 A;  4AZ5 A;  2OO2 A;  4AZH A;  4AZG A;  2YLA A;  4AZB A;  2PMR A;  2YLL A;  4AZC B;  2YL5 A;  4AZC A;  4AZ6 A;  4AZI A;  4FZO A;  3RPM A;  4FZP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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