4G29A

Structure of the catalytic domain of the salmonella virulence factor ssei
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
169
structure length
166
Chain Sequence
TYNLTSDIDAAAYLEELKQNPIINNKIMNPVGQCESLMTPVSNFMNEKGFDNIRYRGIFIWDKPTEEIPTNHFAVVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMAKLIYYTDFSNSSIAANAYDALPRELESESMAGKVFVTSPRWFNTFKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Secreted effector protein sseI
publication title Structure of the catalytic domain of the Salmonella virulence factor SseI.
pubmed doi rcsb
source organism Salmonella enterica subsp. enterica serovar typhimurium
total genus 45
structure length 166
sequence length 169
ec nomenclature
pdb deposition date 2012-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15645 Tox-PLDMTX Dermonecrotoxin of the Papain-like fold
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.670.10 Alpha Beta Roll Secreted effector protein ssei fold Secreted effector protein ssei. 4g29A00
2EC5A 4G2BA 2EBHX 2EBFX 4G29A
chains in the Genus database with same CATH superfamily
2EC5A 4G2BA 2EBHX 2EBFX 4G29A
chains in the Genus database with same CATH topology
2EC5A 4G2BA 2EBHX 2EBFX 4G29A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EC5 A;  4G2B A;  2EBH X;  2EBF X;  4G29 A; 
#chains in the Genus database with same CATH topology
 2EC5 A;  4G2B A;  2EBH X;  2EBF X;  4G29 A; 
#chains in the Genus database with same CATH homology
 2EC5 A;  4G2B A;  2EBH X;  2EBF X;  4G29 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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