The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
106
|
structure length |
106
|
Chain Sequence |
PYIVRLLNSSLNGCEFPLLTGRTLFVVGQSDALTASGQLPDIPADSFFIPLDHGGVNFEIQVDTDATEIILHELKEGNSESRSVQLNTPIQVGELLILIRPESEPW
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Cell invasion
|
| molecule keywords |
Protein prgH
|
| publication title |
A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
pubmed doi rcsb |
| source organism |
Salmonella enterica subsp. enterica serovar typhimurium
|
| total genus |
21
|
| structure length |
106
|
| sequence length |
106
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2012-07-12 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tumour Suppressor Smad4 | Tumour Suppressor Smad4 |
#chains in the Genus database with same CATH superfamily 3FM8 A; 2G1L A; 3KT9 A; 3PO8 A; 2LC1 A; 4JON A; 1K3N A; 4EJQ A; 4A0E A; 1LGQ A; 2FEZ A; 3HUF A; 3VA1 A; 1YJM A; 1LGP A; 3UOT A; 2JPE A; 2KFU A; 4EGX A; 1J4O A; 1R21 A; 3I6W A; 3GQS A; 2FF4 A; 2EH0 A; 1J4L A; 1YJ5 C; 1FHQ A; 3HX1 A; 3HUE A; 3ELS A; 3VA4 A; 3I0M A; 1J4P A; 3MDB A; 2XT9 B; 4G2S A; 2W3O A; 3I0N A; 3UNM A; 2KB4 A; 4QCJ A; 1QU5 A; 3UMZ A; 2CSW A; 5E50 A; 3VPY A; 3OUN A; 1J4Q A; 3UV0 A; 3POA A; 2JQI A; 1UHT A; 1K2M A; 2JQJ A; 3UNN A; 1GXC A; 5DJO A; 1G6G A; 4D9V A; 3UN0 A; 1K3Q A; 1UJX A; 2A0T A; 2PIE A; 1K3J A; 1WLN A; 2AFF A; 2BRF A; 1J4K A; 1WV3 A; 2KKL A; 5A8I A; 2JKD A; 1FHR A; 3ELV A; 1MZK A; 2JQL A; 1DMZ A; 1K2N A; 3I6U A; 2KB3 A; 4H87 A; 1G3G A; #chains in the Genus database with same CATH topology 2JGR A; 5C4V A; 3FM8 A; 5EJH A; 1Z0S A; 2G1L A; 3AFO A; 3KT9 A; 5JEM A; 5JEO A; 5EJI A; 4V24 A; 3PO8 A; 4DY6 A; 2LC1 A; 3S40 A; 4JON A; 1K3N A; 5JEK A; 4EJQ A; 4JIV D; 1DEV A; 1Z0Z A; 4A0E A; 4WRR A; 1KHU A; 1LGQ A; 2BON A; 2FEZ A; 3V7W A; 3HUF A; 3VA1 A; 1YJM A; 1LGP A; 2I2C A; 3UOT A; 1ZOQ A; 2JPE A; 3V80 A; 1MR1 A; 1MK2 A; 2QVL A; 2KFU A; 3V7Y A; 5DHS A; 1U7V B; 4EGX A; 5EJF A; 2I2B A; 1J4O A; 1R21 A; 3DSH A; 3V8P A; 3I6W A; 1KHX A; 2P1R A; 5BVI A; 3GQS A; 2FF4 A; 1Y3H A; 5DHQ A; 2EH0 A; 1J4L A; 1U0R A; 1Y3I A; 1YJ5 C; 1YGS A; 1U7V A; 2QV7 A; 1FHQ A; 3GMJ A; 3HX1 A; 3HUE A; 3ELS A; 3VA4 A; 3DIT A; 3I0M A; 1J2F A; 1J4P A; 3V8N A; 3MDB A; 2XT9 B; 4G2S A; 2I2D A; 2W3O A; 5DHP A; 3V8Q A; 4HAO A; 3I0N A; 4WER A; 3UNM A; 3VZC A; 1MJS A; 4L02 A; 1G88 A; 3V8M A; 2KB4 A; 2I2A A; 4QCJ A; 5JER A; 1QU5 A; 3UMZ A; 2CSW A; 5E50 A; 3VPY A; 3OUN A; 1Z0U A; 1J4Q A; 5DHU A; 3POA A; 3UV0 A; 2JQI A; 1UHT A; 3VZD A; 1K2M A; 3PFN A; 3T5P A; 2JQJ A; 4JIW D; 3UNN A; 1U0T A; 5JEJ A; 1GXC A; 1U7F A; 5DJO A; 1G6G A; 4D9V A; 2I2F A; 3UN0 A; 1QWT A; 4KU0 D; 1K3Q A; 1UJX A; 2A0T A; 2PIE A; 1K3J A; 3A77 A; 3VZB A; 1U7F B; 1WLN A; 2AFF A; 2I29 A; 2BRF A; 5EJG A; 5DHT A; 2XXS A; 2I1W A; 1J4K A; 1YT5 A; 4A4Y A; 4R9P A; 3V7U A; 1WV3 A; 2KKL A; 5A8I A; 5JEL A; 5DHR A; 2JKD A; 1FHR A; 3ELV A; 1MZK A; 2JQL A; 1DD1 A; 1SUW A; 1DMZ A; 1K2N A; 3I6U A; 2Q5F A; 2KB3 A; 4H87 A; 2AN1 A; 3V8R A; 1G3G A; #chains in the Genus database with same CATH homology 2JGR A; 5C4V A; 3FM8 A; 2G1L A; 3KT9 A; 5JEM A; 5JEO A; 4V24 A; 3PO8 A; 2LC1 A; 3S40 A; 4JON A; 1K3N A; 5JEK A; 4EJQ A; 4JIV D; 1DEV A; 4A0E A; 4WRR A; 1KHU A; 1LGQ A; 2BON A; 2FEZ A; 3HUF A; 3VA1 A; 1YJM A; 1LGP A; 3UOT A; 1ZOQ A; 2JPE A; 1MR1 A; 1MK2 A; 2QVL A; 2KFU A; 1U7V B; 4EGX A; 1J4O A; 1R21 A; 3DSH A; 3I6W A; 1KHX A; 2P1R A; 5BVI A; 3GQS A; 2FF4 A; 2EH0 A; 1J4L A; 1YJ5 C; 1YGS A; 1U7V A; 2QV7 A; 1FHQ A; 3GMJ A; 3HX1 A; 3HUE A; 3ELS A; 3VA4 A; 3DIT A; 3I0M A; 1J2F A; 1J4P A; 3MDB A; 2XT9 B; 4G2S A; 2W3O A; 3I0N A; 4WER A; 3UNM A; 3VZC A; 1MJS A; 4L02 A; 1G88 A; 2KB4 A; 4QCJ A; 5JER A; 1QU5 A; 3UMZ A; 2CSW A; 5E50 A; 3VPY A; 3OUN A; 1J4Q A; 3UV0 A; 3POA A; 2JQI A; 1UHT A; 3VZD A; 1K2M A; 3T5P A; 2JQJ A; 4JIW D; 3UNN A; 5JEJ A; 1GXC A; 1U7F A; 5DJO A; 1G6G A; 4D9V A; 3UN0 A; 1QWT A; 4KU0 D; 1K3Q A; 1UJX A; 2A0T A; 2PIE A; 1K3J A; 3A77 A; 3VZB A; 1U7F B; 1WLN A; 2AFF A; 2BRF A; 2XXS A; 1J4K A; 4A4Y A; 4R9P A; 1WV3 A; 2KKL A; 5A8I A; 5JEL A; 2JKD A; 1FHR A; 3ELV A; 1MZK A; 2JQL A; 1DD1 A; 1DMZ A; 1K2N A; 3I6U A; 2KB3 A; 4H87 A; 1G3G A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
