4G38A

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
490
structure length
449
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
total genus 161
structure length 449
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4g38A01
3B0NA 4S23A 2XSJA 2XSJB 3NOYA 3VLXA 3B0GA 1ZJ9A 4S3CA 3MM8A 3AOPA 4S3AA 3VM0A 3MM8B 3B0JA 3VKRA 4S3FA 4S3BA 4HTRA 3B0MA 2AOPA 3MM7A 3OR2A 3OR2B 4S39A 3VKQA 3MM7B 1AOPA 3GEOA 7GEPA 3MMAA 3VKSA 1ZJ8A 8GEPA 6GEPA 4S3DA 4AOPA 4G9PA 4G39A 3B0LA 3MM6A 3MM6B 3VLZA 3MMCA 3MMCB 2V4JA 5AOPA 2Y0FA 3MMBA 3VKPA 2V4JB 3B0HA 3MMBB 2GEPA 4G38A 2AKJA 3VM1A 3MM9A 3MM9B 3MM5A 3OR1A 3OR1B 4GEPA 5GEPA 3VKTA 3VLYA 3MM5B 3MMAB 4S3EA 4S38A
chains in the Genus database with same CATH superfamily
3B0NA 4S23A 2XSJA 2XSJB 3NOYA 3VLXA 3B0GA 1ZJ9A 4S3CA 3MM8A 3AOPA 4S3AA 3VM0A 3MM8B 3B0JA 3VKRA 4S3FA 4S3BA 4HTRA 3B0MA 2AOPA 3MM7A 3OR2A 3OR2B 4S39A 3VKQA 3MM7B 1AOPA 3GEOA 7GEPA 3MMAA 3VKSA 1ZJ8A 8GEPA 6GEPA 4S3DA 4AOPA 4G9PA 4G39A 3B0LA 3MM6A 3MM6B 3VLZA 3MMCA 3MMCB 2V4JA 5AOPA 2Y0FA 3MMBA 3VKPA 2V4JB 3B0HA 3MMBB 2GEPA 4G38A 2AKJA 3VM1A 3MM9A 3MM9B 3MM5A 3OR1A 3OR1B 4GEPA 5GEPA 3VKTA 3VLYA 3MM5B 3MMAB 4S3EA 4S38A
chains in the Genus database with same CATH topology
3B0NA 4S23A 2XSJA 2XSJB 3NOYA 3VLXA 3B0GA 1ZJ9A 4S3CA 3MM8A 3AOPA 4S3AA 3VM0A 3MM8B 3B0JA 3VKRA 4S3FA 4S3BA 4HTRA 3B0MA 2AOPA 3MM7A 3OR2A 3OR2B 4S39A 3VKQA 3MM7B 1AOPA 3GEOA 7GEPA 3MMAA 3VKSA 1ZJ8A 8GEPA 6GEPA 4S3DA 4AOPA 4G9PA 4G39A 3B0LA 3MM6A 3MM6B 3VLZA 3MMCA 3MMCB 2V4JA 5AOPA 2Y0FA 3MMBA 3VKPA 2V4JB 3B0HA 3MMBB 2GEPA 4G38A 2AKJA 3VM1A 3MM9A 3MM9B 3MM5A 3OR1A 3OR1B 4GEPA 5GEPA 3VKTA 3VLYA 3MM5B 3MMAB 4S3EA 4S38A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B0N A;  4S23 A;  2XSJ A;  2XSJ B;  3NOY A;  3VLX A;  3B0G A;  1ZJ9 A;  4S3C A;  3MM8 A;  3AOP A;  4S3A A;  3VM0 A;  3MM8 B;  3B0J A;  3VKR A;  4S3F A;  4S3B A;  4HTR A;  3B0M A;  2AOP A;  3MM7 A;  3OR2 A;  3OR2 B;  4S39 A;  3VKQ A;  3MM7 B;  1AOP A;  3GEO A;  7GEP A;  3MMA A;  3VKS A;  1ZJ8 A;  8GEP A;  6GEP A;  4S3D A;  4AOP A;  4G9P A;  4G39 A;  3B0L A;  3MM6 A;  3MM6 B;  3VLZ A;  3MMC A;  3MMC B;  2V4J A;  5AOP A;  2Y0F A;  3MMB A;  3VKP A;  2V4J B;  3B0H A;  3MMB B;  2GEP A;  4G38 A;  2AKJ A;  3VM1 A;  3MM9 A;  3MM9 B;  3MM5 A;  3OR1 A;  3OR1 B;  4GEP A;  5GEP A;  3VKT A;  3VLY A;  3MM5 B;  3MMA B;  4S3E A;  4S38 A; 
#chains in the Genus database with same CATH topology
 3B0N A;  4S23 A;  2XSJ A;  2XSJ B;  3NOY A;  3VLX A;  3B0G A;  1ZJ9 A;  4S3C A;  3MM8 A;  3AOP A;  4S3A A;  3VM0 A;  3MM8 B;  3B0J A;  3VKR A;  4S3F A;  4S3B A;  4HTR A;  3B0M A;  2AOP A;  3MM7 A;  3OR2 A;  3OR2 B;  4S39 A;  3VKQ A;  3MM7 B;  1AOP A;  3GEO A;  7GEP A;  3MMA A;  3VKS A;  1ZJ8 A;  8GEP A;  6GEP A;  4S3D A;  4AOP A;  4G9P A;  4G39 A;  3B0L A;  3MM6 A;  3MM6 B;  3VLZ A;  3MMC A;  3MMC B;  2V4J A;  5AOP A;  2Y0F A;  3MMB A;  3VKP A;  2V4J B;  3B0H A;  3MMB B;  2GEP A;  4G38 A;  2AKJ A;  3VM1 A;  3MM9 A;  3MM9 B;  3MM5 A;  3OR1 A;  3OR1 B;  4GEP A;  5GEP A;  3VKT A;  3VLY A;  3MM5 B;  3MMA B;  4S3E A;  4S38 A; 
#chains in the Genus database with same CATH homology
 3B0N A;  4S23 A;  2XSJ A;  2XSJ B;  3NOY A;  3VLX A;  3B0G A;  1ZJ9 A;  4S3C A;  3MM8 A;  3AOP A;  4S3A A;  3VM0 A;  3MM8 B;  3B0J A;  3VKR A;  4S3F A;  4S3B A;  4HTR A;  3B0M A;  2AOP A;  3MM7 A;  3OR2 A;  3OR2 B;  4S39 A;  3VKQ A;  3MM7 B;  1AOP A;  3GEO A;  7GEP A;  3MMA A;  3VKS A;  1ZJ8 A;  8GEP A;  6GEP A;  4S3D A;  4AOP A;  4G9P A;  4G39 A;  3B0L A;  3MM6 A;  3MM6 B;  3VLZ A;  3MMC A;  3MMC B;  2V4J A;  5AOP A;  2Y0F A;  3MMB A;  3VKP A;  2V4J B;  3B0H A;  3MMB B;  2GEP A;  4G38 A;  2AKJ A;  3VM1 A;  3MM9 A;  3MM9 B;  3MM5 A;  3OR1 A;  3OR1 B;  4GEP A;  5GEP A;  3VKT A;  3VLY A;  3MM5 B;  3MMA B;  4S3E A;  4S38 A; 
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