4G38A

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
490
structure length
449
Chain Sequence
b'LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 161
structure length 449
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4g38A01
3B0GA 1AOPA 3MM7A 4S3BA 3B0HA 4S38A 3MMAB 8GEPA 3MM8A 3VLXA 2V4JB 2GEPA 3MM9B 3B0JA 3VM0A 4G9PA 3VKRA 2XSJA 3B0NA 3MM6B 3VKPA 7GEPA 5GEPA 3MMCA 3B0LA 3MM5A 3VLZA 6GEPA 5AOPA 4AOPA 1ZJ8A 2AKJA 3MM7B 4S3EA 4S39A 3GEOA 3MM8B 3VM1A 1ZJ9A 4HTRA 3VKQA 3OR2A 4GEPA 3VKTA 4S3CA 2XSJB 3AOPA 3OR1A 4S3FA 3MMBA 2Y0FA 3MMCB 3MM5B 3OR1B 2AOPA 4S3DA 4S3AA 3VKSA 3B0MA 2V4JA 3MMAA 3OR2B 4G38A 4G39A 3VLYA 3MM9A 4S23A 3MM6A 3MMBB 3NOYA
chains in the Genus database with same CATH superfamily
3B0GA 1AOPA 3MM7A 4S3BA 3B0HA 4S38A 3MMAB 8GEPA 3MM8A 3VLXA 2V4JB 2GEPA 3MM9B 3B0JA 3VM0A 4G9PA 3VKRA 2XSJA 3B0NA 3MM6B 3VKPA 7GEPA 5GEPA 3MMCA 3B0LA 3MM5A 3VLZA 6GEPA 5AOPA 4AOPA 1ZJ8A 2AKJA 3MM7B 4S3EA 4S39A 3GEOA 3MM8B 3VM1A 1ZJ9A 4HTRA 3VKQA 3OR2A 4GEPA 3VKTA 4S3CA 2XSJB 3AOPA 3OR1A 4S3FA 3MMBA 2Y0FA 3MMCB 3MM5B 3OR1B 2AOPA 4S3DA 4S3AA 3VKSA 3B0MA 2V4JA 3MMAA 3OR2B 4G38A 4G39A 3VLYA 3MM9A 4S23A 3MM6A 3MMBB 3NOYA
chains in the Genus database with same CATH topology
3B0GA 1AOPA 3MM7A 4S3BA 3B0HA 4S38A 3MMAB 8GEPA 3MM8A 3VLXA 2V4JB 2GEPA 3MM9B 3B0JA 3VM0A 4G9PA 3VKRA 2XSJA 3B0NA 3MM6B 3VKPA 7GEPA 5GEPA 3MMCA 3B0LA 3MM5A 3VLZA 6GEPA 5AOPA 4AOPA 1ZJ8A 2AKJA 3MM7B 4S3EA 4S39A 3GEOA 3MM8B 3VM1A 1ZJ9A 4HTRA 3VKQA 3OR2A 4GEPA 3VKTA 4S3CA 2XSJB 3AOPA 3OR1A 4S3FA 3MMBA 2Y0FA 3MMCB 3MM5B 3OR1B 2AOPA 4S3DA 4S3AA 3VKSA 3B0MA 2V4JA 3MMAA 3OR2B 4G38A 4G39A 3VLYA 3MM9A 4S23A 3MM6A 3MMBB 3NOYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B0G A;  1AOP A;  3MM7 A;  4S3B A;  3B0H A;  4S38 A;  3MMA B;  8GEP A;  3MM8 A;  3VLX A;  2V4J B;  2GEP A;  3MM9 B;  3B0J A;  3VM0 A;  4G9P A;  3VKR A;  2XSJ A;  3B0N A;  3MM6 B;  3VKP A;  7GEP A;  5GEP A;  3MMC A;  3B0L A;  3MM5 A;  3VLZ A;  6GEP A;  5AOP A;  4AOP A;  1ZJ8 A;  2AKJ A;  3MM7 B;  4S3E A;  4S39 A;  3GEO A;  3MM8 B;  3VM1 A;  1ZJ9 A;  4HTR A;  3VKQ A;  3OR2 A;  4GEP A;  3VKT A;  4S3C A;  2XSJ B;  3AOP A;  3OR1 A;  4S3F A;  3MMB A;  2Y0F A;  3MMC B;  3MM5 B;  3OR1 B;  2AOP A;  4S3D A;  4S3A A;  3VKS A;  3B0M A;  2V4J A;  3MMA A;  3OR2 B;  4G38 A;  4G39 A;  3VLY A;  3MM9 A;  4S23 A;  3MM6 A;  3MMB B;  3NOY A; 
#chains in the Genus database with same CATH topology
 3B0G A;  1AOP A;  3MM7 A;  4S3B A;  3B0H A;  4S38 A;  3MMA B;  8GEP A;  3MM8 A;  3VLX A;  2V4J B;  2GEP A;  3MM9 B;  3B0J A;  3VM0 A;  4G9P A;  3VKR A;  2XSJ A;  3B0N A;  3MM6 B;  3VKP A;  7GEP A;  5GEP A;  3MMC A;  3B0L A;  3MM5 A;  3VLZ A;  6GEP A;  5AOP A;  4AOP A;  1ZJ8 A;  2AKJ A;  3MM7 B;  4S3E A;  4S39 A;  3GEO A;  3MM8 B;  3VM1 A;  1ZJ9 A;  4HTR A;  3VKQ A;  3OR2 A;  4GEP A;  3VKT A;  4S3C A;  2XSJ B;  3AOP A;  3OR1 A;  4S3F A;  3MMB A;  2Y0F A;  3MMC B;  3MM5 B;  3OR1 B;  2AOP A;  4S3D A;  4S3A A;  3VKS A;  3B0M A;  2V4J A;  3MMA A;  3OR2 B;  4G38 A;  4G39 A;  3VLY A;  3MM9 A;  4S23 A;  3MM6 A;  3MMB B;  3NOY A; 
#chains in the Genus database with same CATH homology
 3B0G A;  1AOP A;  3MM7 A;  4S3B A;  3B0H A;  4S38 A;  3MMA B;  8GEP A;  3MM8 A;  3VLX A;  2V4J B;  2GEP A;  3MM9 B;  3B0J A;  3VM0 A;  4G9P A;  3VKR A;  2XSJ A;  3B0N A;  3MM6 B;  3VKP A;  7GEP A;  5GEP A;  3MMC A;  3B0L A;  3MM5 A;  3VLZ A;  6GEP A;  5AOP A;  4AOP A;  1ZJ8 A;  2AKJ A;  3MM7 B;  4S3E A;  4S39 A;  3GEO A;  3MM8 B;  3VM1 A;  1ZJ9 A;  4HTR A;  3VKQ A;  3OR2 A;  4GEP A;  3VKT A;  4S3C A;  2XSJ B;  3AOP A;  3OR1 A;  4S3F A;  3MMB A;  2Y0F A;  3MMC B;  3MM5 B;  3OR1 B;  2AOP A;  4S3D A;  4S3A A;  3VKS A;  3B0M A;  2V4J A;  3MMA A;  3OR2 B;  4G38 A;  4G39 A;  3VLY A;  3MM9 A;  4S23 A;  3MM6 A;  3MMB B;  3NOY A; 
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