4G38A

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
490
structure length
449
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 161
structure length 449
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g38A03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4g38A01
2AKJA 3MMBB 4G38A 4S3DA 4S39A 7GEPA 3MM6A 4G39A 4HTRA 1ZJ8A 3NOYA 3B0JA 4AOPA 4S23A 2XSJB 3MMCB 4G9PA 3VKQA 3MMAA 6GEPA 2V4JB 4S38A 3VLXA 4S3AA 3B0HA 3OR1B 1ZJ9A 3MMBA 3MM5B 3OR2A 3MM7B 3MM8A 2Y0FA 3MM9B 3B0MA 3VLYA 3AOPA 3B0NA 3VKSA 4S3EA 8GEPA 3VM0A 2GEPA 3VLZA 2XSJA 5GEPA 3VKRA 3MM6B 3VKTA 3B0GA 4GEPA 3MMCA 2V4JA 4S3CA 4S3FA 2AOPA 1AOPA 3OR1A 4S3BA 3MM5A 5AOPA 3GEOA 3MMAB 3MM7A 3VM1A 3VKPA 3MM9A 3OR2B 3B0LA 3MM8B
chains in the Genus database with same CATH superfamily
2AKJA 3MMBB 4G38A 4S3DA 4S39A 7GEPA 3MM6A 4G39A 4HTRA 1ZJ8A 3NOYA 3B0JA 4AOPA 4S23A 2XSJB 3MMCB 4G9PA 3VKQA 3MMAA 6GEPA 2V4JB 4S38A 3VLXA 4S3AA 3B0HA 3OR1B 1ZJ9A 3MMBA 3MM5B 3OR2A 3MM7B 3MM8A 2Y0FA 3MM9B 3B0MA 3VLYA 3AOPA 3B0NA 3VKSA 4S3EA 8GEPA 3VM0A 2GEPA 3VLZA 2XSJA 5GEPA 3VKRA 3MM6B 3VKTA 3B0GA 4GEPA 3MMCA 2V4JA 4S3CA 4S3FA 2AOPA 1AOPA 3OR1A 4S3BA 3MM5A 5AOPA 3GEOA 3MMAB 3MM7A 3VM1A 3VKPA 3MM9A 3OR2B 3B0LA 3MM8B
chains in the Genus database with same CATH topology
2AKJA 3MMBB 4G38A 4S3DA 4S39A 7GEPA 3MM6A 4G39A 4HTRA 1ZJ8A 3NOYA 3B0JA 4AOPA 4S23A 2XSJB 3MMCB 4G9PA 3VKQA 3MMAA 6GEPA 2V4JB 4S38A 3VLXA 4S3AA 3B0HA 3OR1B 1ZJ9A 3MMBA 3MM5B 3OR2A 3MM7B 3MM8A 2Y0FA 3MM9B 3B0MA 3VLYA 3AOPA 3B0NA 3VKSA 4S3EA 8GEPA 3VM0A 2GEPA 3VLZA 2XSJA 5GEPA 3VKRA 3MM6B 3VKTA 3B0GA 4GEPA 3MMCA 2V4JA 4S3CA 4S3FA 2AOPA 1AOPA 3OR1A 4S3BA 3MM5A 5AOPA 3GEOA 3MMAB 3MM7A 3VM1A 3VKPA 3MM9A 3OR2B 3B0LA 3MM8B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AKJ A;  3MMB B;  4G38 A;  4S3D A;  4S39 A;  7GEP A;  3MM6 A;  4G39 A;  4HTR A;  1ZJ8 A;  3NOY A;  3B0J A;  4AOP A;  4S23 A;  2XSJ B;  3MMC B;  4G9P A;  3VKQ A;  3MMA A;  6GEP A;  2V4J B;  4S38 A;  3VLX A;  4S3A A;  3B0H A;  3OR1 B;  1ZJ9 A;  3MMB A;  3MM5 B;  3OR2 A;  3MM7 B;  3MM8 A;  2Y0F A;  3MM9 B;  3B0M A;  3VLY A;  3AOP A;  3B0N A;  3VKS A;  4S3E A;  8GEP A;  3VM0 A;  2GEP A;  3VLZ A;  2XSJ A;  5GEP A;  3VKR A;  3MM6 B;  3VKT A;  3B0G A;  4GEP A;  3MMC A;  2V4J A;  4S3C A;  4S3F A;  2AOP A;  1AOP A;  3OR1 A;  4S3B A;  3MM5 A;  5AOP A;  3GEO A;  3MMA B;  3MM7 A;  3VM1 A;  3VKP A;  3MM9 A;  3OR2 B;  3B0L A;  3MM8 B; 
#chains in the Genus database with same CATH topology
 2AKJ A;  3MMB B;  4G38 A;  4S3D A;  4S39 A;  7GEP A;  3MM6 A;  4G39 A;  4HTR A;  1ZJ8 A;  3NOY A;  3B0J A;  4AOP A;  4S23 A;  2XSJ B;  3MMC B;  4G9P A;  3VKQ A;  3MMA A;  6GEP A;  2V4J B;  4S38 A;  3VLX A;  4S3A A;  3B0H A;  3OR1 B;  1ZJ9 A;  3MMB A;  3MM5 B;  3OR2 A;  3MM7 B;  3MM8 A;  2Y0F A;  3MM9 B;  3B0M A;  3VLY A;  3AOP A;  3B0N A;  3VKS A;  4S3E A;  8GEP A;  3VM0 A;  2GEP A;  3VLZ A;  2XSJ A;  5GEP A;  3VKR A;  3MM6 B;  3VKT A;  3B0G A;  4GEP A;  3MMC A;  2V4J A;  4S3C A;  4S3F A;  2AOP A;  1AOP A;  3OR1 A;  4S3B A;  3MM5 A;  5AOP A;  3GEO A;  3MMA B;  3MM7 A;  3VM1 A;  3VKP A;  3MM9 A;  3OR2 B;  3B0L A;  3MM8 B; 
#chains in the Genus database with same CATH homology
 2AKJ A;  3MMB B;  4G38 A;  4S3D A;  4S39 A;  7GEP A;  3MM6 A;  4G39 A;  4HTR A;  1ZJ8 A;  3NOY A;  3B0J A;  4AOP A;  4S23 A;  2XSJ B;  3MMC B;  4G9P A;  3VKQ A;  3MMA A;  6GEP A;  2V4J B;  4S38 A;  3VLX A;  4S3A A;  3B0H A;  3OR1 B;  1ZJ9 A;  3MMB A;  3MM5 B;  3OR2 A;  3MM7 B;  3MM8 A;  2Y0F A;  3MM9 B;  3B0M A;  3VLY A;  3AOP A;  3B0N A;  3VKS A;  4S3E A;  8GEP A;  3VM0 A;  2GEP A;  3VLZ A;  2XSJ A;  5GEP A;  3VKR A;  3MM6 B;  3VKT A;  3B0G A;  4GEP A;  3MMC A;  2V4J A;  4S3C A;  4S3F A;  2AOP A;  1AOP A;  3OR1 A;  4S3B A;  3MM5 A;  5AOP A;  3GEO A;  3MMA B;  3MM7 A;  3VM1 A;  3VKP A;  3MM9 A;  3OR2 B;  3B0L A;  3MM8 B; 
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