4G39A

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
491
structure length
465
Chain Sequence
b'MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNSNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 166
structure length 465
sequence length 491
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g39A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g39A03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4g39A01
4G38A 2XSJB 3MM5B 3VKTA 3B0LA 2GEPA 3MM9A 3VLXA 3MMCB 3OR1B 4S3DA 3AOPA 4S3AA 4AOPA 3MM8A 3OR2A 3MM6B 3VKRA 3MM7A 4S3FA 3B0MA 2AKJA 2V4JB 3B0NA 3MMAA 3MMBA 4GEPA 3VM0A 2XSJA 3MM5A 4HTRA 8GEPA 4S3BA 1AOPA 4S39A 3MMCA 3OR1A 3VKSA 4S38A 2Y0FA 4G9PA 4S23A 3MM6A 4G39A 4S3CA 2V4JA 3NOYA 3VLZA 3VKQA 4S3EA 3B0HA 1ZJ8A 3MM9B 3VKPA 3VLYA 3VM1A 3GEOA 1ZJ9A 2AOPA 3B0GA 3B0JA 5AOPA 7GEPA 5GEPA 3MMAB 3MM8B 3OR2B 3MM7B 6GEPA 3MMBB
chains in the Genus database with same CATH superfamily
4G38A 2XSJB 3MM5B 3VKTA 3B0LA 2GEPA 3MM9A 3VLXA 3MMCB 3OR1B 4S3DA 3AOPA 4S3AA 4AOPA 3MM8A 3OR2A 3MM6B 3VKRA 3MM7A 4S3FA 3B0MA 2AKJA 2V4JB 3B0NA 3MMAA 3MMBA 4GEPA 3VM0A 2XSJA 3MM5A 4HTRA 8GEPA 4S3BA 1AOPA 4S39A 3MMCA 3OR1A 3VKSA 4S38A 2Y0FA 4G9PA 4S23A 3MM6A 4G39A 4S3CA 2V4JA 3NOYA 3VLZA 3VKQA 4S3EA 3B0HA 1ZJ8A 3MM9B 3VKPA 3VLYA 3VM1A 3GEOA 1ZJ9A 2AOPA 3B0GA 3B0JA 5AOPA 7GEPA 5GEPA 3MMAB 3MM8B 3OR2B 3MM7B 6GEPA 3MMBB
chains in the Genus database with same CATH topology
4G38A 2XSJB 3MM5B 3VKTA 3B0LA 2GEPA 3MM9A 3VLXA 3MMCB 3OR1B 4S3DA 3AOPA 4S3AA 4AOPA 3MM8A 3OR2A 3MM6B 3VKRA 3MM7A 4S3FA 3B0MA 2AKJA 2V4JB 3B0NA 3MMAA 3MMBA 4GEPA 3VM0A 2XSJA 3MM5A 4HTRA 8GEPA 4S3BA 1AOPA 4S39A 3MMCA 3OR1A 3VKSA 4S38A 2Y0FA 4G9PA 4S23A 3MM6A 4G39A 4S3CA 2V4JA 3NOYA 3VLZA 3VKQA 4S3EA 3B0HA 1ZJ8A 3MM9B 3VKPA 3VLYA 3VM1A 3GEOA 1ZJ9A 2AOPA 3B0GA 3B0JA 5AOPA 7GEPA 5GEPA 3MMAB 3MM8B 3OR2B 3MM7B 6GEPA 3MMBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G38 A;  2XSJ B;  3MM5 B;  3VKT A;  3B0L A;  2GEP A;  3MM9 A;  3VLX A;  3MMC B;  3OR1 B;  4S3D A;  3AOP A;  4S3A A;  4AOP A;  3MM8 A;  3OR2 A;  3MM6 B;  3VKR A;  3MM7 A;  4S3F A;  3B0M A;  2AKJ A;  2V4J B;  3B0N A;  3MMA A;  3MMB A;  4GEP A;  3VM0 A;  2XSJ A;  3MM5 A;  4HTR A;  8GEP A;  4S3B A;  1AOP A;  4S39 A;  3MMC A;  3OR1 A;  3VKS A;  4S38 A;  2Y0F A;  4G9P A;  4S23 A;  3MM6 A;  4G39 A;  4S3C A;  2V4J A;  3NOY A;  3VLZ A;  3VKQ A;  4S3E A;  3B0H A;  1ZJ8 A;  3MM9 B;  3VKP A;  3VLY A;  3VM1 A;  3GEO A;  1ZJ9 A;  2AOP A;  3B0G A;  3B0J A;  5AOP A;  7GEP A;  5GEP A;  3MMA B;  3MM8 B;  3OR2 B;  3MM7 B;  6GEP A;  3MMB B; 
#chains in the Genus database with same CATH topology
 4G38 A;  2XSJ B;  3MM5 B;  3VKT A;  3B0L A;  2GEP A;  3MM9 A;  3VLX A;  3MMC B;  3OR1 B;  4S3D A;  3AOP A;  4S3A A;  4AOP A;  3MM8 A;  3OR2 A;  3MM6 B;  3VKR A;  3MM7 A;  4S3F A;  3B0M A;  2AKJ A;  2V4J B;  3B0N A;  3MMA A;  3MMB A;  4GEP A;  3VM0 A;  2XSJ A;  3MM5 A;  4HTR A;  8GEP A;  4S3B A;  1AOP A;  4S39 A;  3MMC A;  3OR1 A;  3VKS A;  4S38 A;  2Y0F A;  4G9P A;  4S23 A;  3MM6 A;  4G39 A;  4S3C A;  2V4J A;  3NOY A;  3VLZ A;  3VKQ A;  4S3E A;  3B0H A;  1ZJ8 A;  3MM9 B;  3VKP A;  3VLY A;  3VM1 A;  3GEO A;  1ZJ9 A;  2AOP A;  3B0G A;  3B0J A;  5AOP A;  7GEP A;  5GEP A;  3MMA B;  3MM8 B;  3OR2 B;  3MM7 B;  6GEP A;  3MMB B; 
#chains in the Genus database with same CATH homology
 4G38 A;  2XSJ B;  3MM5 B;  3VKT A;  3B0L A;  2GEP A;  3MM9 A;  3VLX A;  3MMC B;  3OR1 B;  4S3D A;  3AOP A;  4S3A A;  4AOP A;  3MM8 A;  3OR2 A;  3MM6 B;  3VKR A;  3MM7 A;  4S3F A;  3B0M A;  2AKJ A;  2V4J B;  3B0N A;  3MMA A;  3MMB A;  4GEP A;  3VM0 A;  2XSJ A;  3MM5 A;  4HTR A;  8GEP A;  4S3B A;  1AOP A;  4S39 A;  3MMC A;  3OR1 A;  3VKS A;  4S38 A;  2Y0F A;  4G9P A;  4S23 A;  3MM6 A;  4G39 A;  4S3C A;  2V4J A;  3NOY A;  3VLZ A;  3VKQ A;  4S3E A;  3B0H A;  1ZJ8 A;  3MM9 B;  3VKP A;  3VLY A;  3VM1 A;  3GEO A;  1ZJ9 A;  2AOP A;  3B0G A;  3B0J A;  5AOP A;  7GEP A;  5GEP A;  3MMA B;  3MM8 B;  3OR2 B;  3MM7 B;  6GEP A;  3MMB B; 
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