4G39A

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
491
structure length
465
Chain Sequence
MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNSNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
total genus 166
structure length 465
sequence length 491
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g39A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g39A03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4g39A01
3MMCA 4S38A 3OR2A 3MM5A 3MM8B 3MM6B 3OR2B 2XSJA 3VLXA 4GEPA 3VKRA 1ZJ8A 3MM6A 2Y0FA 3MM9B 3MM8A 4G9PA 2V4JA 4S3EA 4S3FA 4S3AA 3B0JA 3VKQA 3VLZA 2AKJA 3B0LA 3MMAB 4S23A 3B0HA 3VKPA 3VKTA 2AOPA 4S3DA 4S39A 1ZJ9A 3OR1B 6GEPA 3MM5B 3VLYA 3B0GA 4S3CA 3VM0A 5AOPA 3NOYA 3B0MA 4HTRA 2XSJB 2GEPA 1AOPA 3MMAA 4G39A 3MM9A 8GEPA 2V4JB 3MMBA 4S3BA 3MM7A 3MMBB 7GEPA 3GEOA 3MM7B 5GEPA 3B0NA 4G38A 3VM1A 4AOPA 3MMCB 3AOPA 3OR1A 3VKSA
chains in the Genus database with same CATH superfamily
3MMCA 4S38A 3OR2A 3MM5A 3MM8B 3MM6B 3OR2B 2XSJA 3VLXA 4GEPA 3VKRA 1ZJ8A 3MM6A 2Y0FA 3MM9B 3MM8A 4G9PA 2V4JA 4S3EA 4S3FA 4S3AA 3B0JA 3VKQA 3VLZA 2AKJA 3B0LA 3MMAB 4S23A 3B0HA 3VKPA 3VKTA 2AOPA 4S3DA 4S39A 1ZJ9A 3OR1B 6GEPA 3MM5B 3VLYA 3B0GA 4S3CA 3VM0A 5AOPA 3NOYA 3B0MA 4HTRA 2XSJB 2GEPA 1AOPA 3MMAA 4G39A 3MM9A 8GEPA 2V4JB 3MMBA 4S3BA 3MM7A 3MMBB 7GEPA 3GEOA 3MM7B 5GEPA 3B0NA 4G38A 3VM1A 4AOPA 3MMCB 3AOPA 3OR1A 3VKSA
chains in the Genus database with same CATH topology
3MMCA 4S38A 3OR2A 3MM5A 3MM8B 3MM6B 3OR2B 2XSJA 3VLXA 4GEPA 3VKRA 1ZJ8A 3MM6A 2Y0FA 3MM9B 3MM8A 4G9PA 2V4JA 4S3EA 4S3FA 4S3AA 3B0JA 3VKQA 3VLZA 2AKJA 3B0LA 3MMAB 4S23A 3B0HA 3VKPA 3VKTA 2AOPA 4S3DA 4S39A 1ZJ9A 3OR1B 6GEPA 3MM5B 3VLYA 3B0GA 4S3CA 3VM0A 5AOPA 3NOYA 3B0MA 4HTRA 2XSJB 2GEPA 1AOPA 3MMAA 4G39A 3MM9A 8GEPA 2V4JB 3MMBA 4S3BA 3MM7A 3MMBB 7GEPA 3GEOA 3MM7B 5GEPA 3B0NA 4G38A 3VM1A 4AOPA 3MMCB 3AOPA 3OR1A 3VKSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MMC A;  4S38 A;  3OR2 A;  3MM5 A;  3MM8 B;  3MM6 B;  3OR2 B;  2XSJ A;  3VLX A;  4GEP A;  3VKR A;  1ZJ8 A;  3MM6 A;  2Y0F A;  3MM9 B;  3MM8 A;  4G9P A;  2V4J A;  4S3E A;  4S3F A;  4S3A A;  3B0J A;  3VKQ A;  3VLZ A;  2AKJ A;  3B0L A;  3MMA B;  4S23 A;  3B0H A;  3VKP A;  3VKT A;  2AOP A;  4S3D A;  4S39 A;  1ZJ9 A;  3OR1 B;  6GEP A;  3MM5 B;  3VLY A;  3B0G A;  4S3C A;  3VM0 A;  5AOP A;  3NOY A;  3B0M A;  4HTR A;  2XSJ B;  2GEP A;  1AOP A;  3MMA A;  4G39 A;  3MM9 A;  8GEP A;  2V4J B;  3MMB A;  4S3B A;  3MM7 A;  3MMB B;  7GEP A;  3GEO A;  3MM7 B;  5GEP A;  3B0N A;  4G38 A;  3VM1 A;  4AOP A;  3MMC B;  3AOP A;  3OR1 A;  3VKS A; 
#chains in the Genus database with same CATH topology
 3MMC A;  4S38 A;  3OR2 A;  3MM5 A;  3MM8 B;  3MM6 B;  3OR2 B;  2XSJ A;  3VLX A;  4GEP A;  3VKR A;  1ZJ8 A;  3MM6 A;  2Y0F A;  3MM9 B;  3MM8 A;  4G9P A;  2V4J A;  4S3E A;  4S3F A;  4S3A A;  3B0J A;  3VKQ A;  3VLZ A;  2AKJ A;  3B0L A;  3MMA B;  4S23 A;  3B0H A;  3VKP A;  3VKT A;  2AOP A;  4S3D A;  4S39 A;  1ZJ9 A;  3OR1 B;  6GEP A;  3MM5 B;  3VLY A;  3B0G A;  4S3C A;  3VM0 A;  5AOP A;  3NOY A;  3B0M A;  4HTR A;  2XSJ B;  2GEP A;  1AOP A;  3MMA A;  4G39 A;  3MM9 A;  8GEP A;  2V4J B;  3MMB A;  4S3B A;  3MM7 A;  3MMB B;  7GEP A;  3GEO A;  3MM7 B;  5GEP A;  3B0N A;  4G38 A;  3VM1 A;  4AOP A;  3MMC B;  3AOP A;  3OR1 A;  3VKS A; 
#chains in the Genus database with same CATH homology
 3MMC A;  4S38 A;  3OR2 A;  3MM5 A;  3MM8 B;  3MM6 B;  3OR2 B;  2XSJ A;  3VLX A;  4GEP A;  3VKR A;  1ZJ8 A;  3MM6 A;  2Y0F A;  3MM9 B;  3MM8 A;  4G9P A;  2V4J A;  4S3E A;  4S3F A;  4S3A A;  3B0J A;  3VKQ A;  3VLZ A;  2AKJ A;  3B0L A;  3MMA B;  4S23 A;  3B0H A;  3VKP A;  3VKT A;  2AOP A;  4S3D A;  4S39 A;  1ZJ9 A;  3OR1 B;  6GEP A;  3MM5 B;  3VLY A;  3B0G A;  4S3C A;  3VM0 A;  5AOP A;  3NOY A;  3B0M A;  4HTR A;  2XSJ B;  2GEP A;  1AOP A;  3MMA A;  4G39 A;  3MM9 A;  8GEP A;  2V4J B;  3MMB A;  4S3B A;  3MM7 A;  3MMB B;  7GEP A;  3GEO A;  3MM7 B;  5GEP A;  3B0N A;  4G38 A;  3VM1 A;  4AOP A;  3MMC B;  3AOP A;  3OR1 A;  3VKS A; 
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