4G39A

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer
Total Genus 166
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
491
structure length
465
Chain Sequence
MLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNSNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
total genus 166
structure length 465
sequence length 491
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g39A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4g39A03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4g39A01
3B0NA 3MMAA 3MMBB 3VKSA 3MMCB 3OR1B 4S23A 4S39A 4GEPA 3B0HA 4S3DA 3VM0A 4G39A 3OR2A 3MM6A 3OR2B 3B0GA 3MM9B 3MM6B 3MM8B 4HTRA 3VKTA 2AKJA 3MM9A 3VLYA 4AOPA 2V4JA 3VLXA 3VM1A 5GEPA 3B0MA 3MM8A 2V4JB 3NOYA 2XSJB 7GEPA 3GEOA 3VLZA 1ZJ8A 4G38A 2AOPA 3MM7B 4S3BA 4S3AA 3VKRA 1ZJ9A 2XSJA 3MM5A 3MM7A 8GEPA 2GEPA 3MM5B 4S3CA 3VKQA 3AOPA 3VKPA 3B0JA 6GEPA 4S3FA 3MMCA 2Y0FA 3OR1A 4G9PA 4S3EA 5AOPA 3MMAB 1AOPA 4S38A 3MMBA 3B0LA
chains in the Genus database with same CATH superfamily
3B0NA 3MMAA 3MMBB 3VKSA 3MMCB 3OR1B 4S23A 4S39A 4GEPA 3B0HA 4S3DA 3VM0A 4G39A 3OR2A 3MM6A 3OR2B 3B0GA 3MM9B 3MM6B 3MM8B 4HTRA 3VKTA 2AKJA 3MM9A 3VLYA 4AOPA 2V4JA 3VLXA 3VM1A 5GEPA 3B0MA 3MM8A 2V4JB 3NOYA 2XSJB 7GEPA 3GEOA 3VLZA 1ZJ8A 4G38A 2AOPA 3MM7B 4S3BA 4S3AA 3VKRA 1ZJ9A 2XSJA 3MM5A 3MM7A 8GEPA 2GEPA 3MM5B 4S3CA 3VKQA 3AOPA 3VKPA 3B0JA 6GEPA 4S3FA 3MMCA 2Y0FA 3OR1A 4G9PA 4S3EA 5AOPA 3MMAB 1AOPA 4S38A 3MMBA 3B0LA
chains in the Genus database with same CATH topology
3B0NA 3MMAA 3MMBB 3VKSA 3MMCB 3OR1B 4S23A 4S39A 4GEPA 3B0HA 4S3DA 3VM0A 4G39A 3OR2A 3MM6A 3OR2B 3B0GA 3MM9B 3MM6B 3MM8B 4HTRA 3VKTA 2AKJA 3MM9A 3VLYA 4AOPA 2V4JA 3VLXA 3VM1A 5GEPA 3B0MA 3MM8A 2V4JB 3NOYA 2XSJB 7GEPA 3GEOA 3VLZA 1ZJ8A 4G38A 2AOPA 3MM7B 4S3BA 4S3AA 3VKRA 1ZJ9A 2XSJA 3MM5A 3MM7A 8GEPA 2GEPA 3MM5B 4S3CA 3VKQA 3AOPA 3VKPA 3B0JA 6GEPA 4S3FA 3MMCA 2Y0FA 3OR1A 4G9PA 4S3EA 5AOPA 3MMAB 1AOPA 4S38A 3MMBA 3B0LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B0N A;  3MMA A;  3MMB B;  3VKS A;  3MMC B;  3OR1 B;  4S23 A;  4S39 A;  4GEP A;  3B0H A;  4S3D A;  3VM0 A;  4G39 A;  3OR2 A;  3MM6 A;  3OR2 B;  3B0G A;  3MM9 B;  3MM6 B;  3MM8 B;  4HTR A;  3VKT A;  2AKJ A;  3MM9 A;  3VLY A;  4AOP A;  2V4J A;  3VLX A;  3VM1 A;  5GEP A;  3B0M A;  3MM8 A;  2V4J B;  3NOY A;  2XSJ B;  7GEP A;  3GEO A;  3VLZ A;  1ZJ8 A;  4G38 A;  2AOP A;  3MM7 B;  4S3B A;  4S3A A;  3VKR A;  1ZJ9 A;  2XSJ A;  3MM5 A;  3MM7 A;  8GEP A;  2GEP A;  3MM5 B;  4S3C A;  3VKQ A;  3AOP A;  3VKP A;  3B0J A;  6GEP A;  4S3F A;  3MMC A;  2Y0F A;  3OR1 A;  4G9P A;  4S3E A;  5AOP A;  3MMA B;  1AOP A;  4S38 A;  3MMB A;  3B0L A; 
#chains in the Genus database with same CATH topology
 3B0N A;  3MMA A;  3MMB B;  3VKS A;  3MMC B;  3OR1 B;  4S23 A;  4S39 A;  4GEP A;  3B0H A;  4S3D A;  3VM0 A;  4G39 A;  3OR2 A;  3MM6 A;  3OR2 B;  3B0G A;  3MM9 B;  3MM6 B;  3MM8 B;  4HTR A;  3VKT A;  2AKJ A;  3MM9 A;  3VLY A;  4AOP A;  2V4J A;  3VLX A;  3VM1 A;  5GEP A;  3B0M A;  3MM8 A;  2V4J B;  3NOY A;  2XSJ B;  7GEP A;  3GEO A;  3VLZ A;  1ZJ8 A;  4G38 A;  2AOP A;  3MM7 B;  4S3B A;  4S3A A;  3VKR A;  1ZJ9 A;  2XSJ A;  3MM5 A;  3MM7 A;  8GEP A;  2GEP A;  3MM5 B;  4S3C A;  3VKQ A;  3AOP A;  3VKP A;  3B0J A;  6GEP A;  4S3F A;  3MMC A;  2Y0F A;  3OR1 A;  4G9P A;  4S3E A;  5AOP A;  3MMA B;  1AOP A;  4S38 A;  3MMB A;  3B0L A; 
#chains in the Genus database with same CATH homology
 3B0N A;  3MMA A;  3MMB B;  3VKS A;  3MMC B;  3OR1 B;  4S23 A;  4S39 A;  4GEP A;  3B0H A;  4S3D A;  3VM0 A;  4G39 A;  3OR2 A;  3MM6 A;  3OR2 B;  3B0G A;  3MM9 B;  3MM6 B;  3MM8 B;  4HTR A;  3VKT A;  2AKJ A;  3MM9 A;  3VLY A;  4AOP A;  2V4J A;  3VLX A;  3VM1 A;  5GEP A;  3B0M A;  3MM8 A;  2V4J B;  3NOY A;  2XSJ B;  7GEP A;  3GEO A;  3VLZ A;  1ZJ8 A;  4G38 A;  2AOP A;  3MM7 B;  4S3B A;  4S3A A;  3VKR A;  1ZJ9 A;  2XSJ A;  3MM5 A;  3MM7 A;  8GEP A;  2GEP A;  3MM5 B;  4S3C A;  3VKQ A;  3AOP A;  3VKP A;  3B0J A;  6GEP A;  4S3F A;  3MMC A;  2Y0F A;  3OR1 A;  4G9P A;  4S3E A;  5AOP A;  3MMA B;  1AOP A;  4S38 A;  3MMB A;  3B0L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...