4G3HA

Crystal structure of helicobacter pylori arginase
Total Genus 119
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
311
structure length
301
Chain Sequence
MILVGLEAELGASKRGTDKGVRRLREALSATHGDVIKGMQTITQERCVLYKEFRYAKNFEDYYLFCKENLIPCMKEVFEKKEFPLILSSEHANMFGIFQAFRSVHKDKKIGILYLDAHADIHTAYIHGMPLGMVLNRVRRMSESEEKAWQKLCSLGLEKGGLEIDPKCLVYFGVRSTEQSERDVIRELQIPLFSVDAIRENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLESFKDRLKAVEVTEYNPTVSIKHNNEEEKQVLEILDLIINSCKI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Arginase (RocF)
publication title Structure and function studies on Helicobacter pylori arginase
rcsb
source organism Helicobacter pylori
total genus 119
structure length 301
sequence length 311
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 4g3hA00
4IE2A 4G3HA 3MFVA 3THEA 3E6KA 4IU4A 3TF3A 1RLAA 1T4SA 2PHAA 4MXRA 3SJTA 1P8PA 3M1RA 1WVAA 1P8MA 4IU5A 4IU1A 4Q3RA 3CEVA 2RLAA 4Q3RC 1TBJA 1PQ3A 1T4TA 4RHJA 3TH7A 3SL0A 4IXVA 1D3VA 3SL1A 3KV2A 3THJA 2PHOA 4ITYA 5CEVA 4MYKA 1CEVA 3LP7A 4Q3QA 1TBHA 4FCIA 4Q3PA 4Q3UA 1GQ7A 1TBLA 1WOIA 3PZLA 4Q3SA 3LHLA 2EF4A 3LP4A 4RHLA 2CEVA 4DZ4A 4RLAA 4RHKA 4GSVA 1ZPGA 2ZAVA 1XFKA 4HXQA 2EF5A 4MYNA 3SKKA 2EIVA 3E8QA 3MJLA 4RHIA 5HJ9A 3GMZA 4IE3A 1P8QA 1T4PA 3MMRA 2PLLA 1P8OA 3F80A 4I06A 1P8SA 4CEVA 1HQFA 4Q41A 1WOHA 4Q42A 3GN0A 3MFWA 1T5GA 4IE1A 1T5FA 5HJAA 4HZEA 4MYLA 1HQHA 3NIPA 4Q3VA 1GQ6A 4Q3TA 1WOGA 4HWWA 3E8ZA 3RLAA 4Q40A 4IXUA 1HQ5A 1P8RA 4GSMA 4GWDA 4GSZA 2AEBA 5RLAA 3DJ8A 4RHQA 3E9BA 4RHMA 1ZPEA 3NIQA 3E6VA 3NIOA 2A0MA 1P8NA 1R1OA 4MYFA 1T4RA 1HQXA 4GWCA 4FCKA 1WVBA 3THHA 1TA1A 4IU0A 1HQGA
chains in the Genus database with same CATH superfamily
4IE2A 4G3HA 2VQJA 4BZ5A 3Q9FA 3MFVA 4ZUPA 1W22A 3F07A 3THEA 3MAXA 3E6KA 4IU4A 3TF3A 1RLAA 1T4SA 2PHAA 5BWZA 4MXRA 5EEMA 3SJTA 3EZPA 1P8PA 2VQOA 3M1RA 1WVAA 1P8MA 5G0IA 5G0XA 4IU5A 4IU1A 4Q3RA 3CEVA 5G0YA 2RLAA 5EEFA 4Q3RC 1TBJA 1PQ3A 1T4TA 4RHJA 4CQFA 3TH7A 5EF8A 3SL0A 4IXVA 1D3VA 5G0GA 3SL1A 4ZURA 1T64A 3KV2A 5DC7A 1C3RA 3THJA 2PHOA 5JI5A 3C0ZA 3EWFA 4ITYA 1CEVA 3F06A 4MYKA 3LP7A 4LXZA 4Q3QA 5EF7A 5LI3A 1TBHA 2VQVA 4FCIA 4Q3PA 3MZ6A 4Q3UA 4A69A 1GQ7A 1TBLA 4BKXB 1WOIA 3PZLA 4Q3SA 3LHLA 5G10A 5FUEA 2EF4A 1C3SA 3LP4A 3Q9EA 4QA5A 4RHLA 5EEKA 2CEVA 5IX0A 5EFGA 5D1DA 4DZ4A 4RLAA 4RHKA 4GSVA 1ZPGA 2ZAVA 4QA1A 5EFHA 5THSA 1ZZ0A 4BZ6A 5A2SA 3Q9BA 1ZZ3A 5G13A 1XFKA 5CEVA 3SFFA 4HXQA 5EFBD 2V5WA 2EF5A 4MYNA 3SKKA 2EIVA 3RQDA 1T69A 5EENA 4CBYA 3E8QA 3MJLA 4RHIA 3C10A 3Q9CA 4RN0A 3GMZA 5DC8A 5HJ9A 4IE3A 2VCGA 1P8QA 5THTA 4BZ8A 5G0JA 1T4PA 3EW8A 3MMRA 5G12A 2PLLA 1P8OA 4ZUNA 4CBTA 3F80A 3MZ7A 4QA2A 4I06A 1P8SA 4CEVA 5G1CA 1HQFA 4ZUOA 5G3WA 4Q41A 5G11A 1WOHA 4Q42A 4QA4A 3GN0A 3MZ4A 3MFWA 1T5GA 4IE1A 2VQWG 4RN2A 5G17A 1T5FA 4RN1A 2V5XA 5HJAA 4QA0A 4HZEA 3MZ3A 5EFNA 5THVA 4MYLA 4QA3A 1HQHA 3NIPA 4Q3VA 1GQ6A 3MENA 4BZ9A 4Q3TA 1WOGA 4HWWA 1ZZ1A 3E8ZA 5EFJD 4ZUMA 3ZNSA 3RLAA 4Q40A 4IU0A 4IXUA 1HQ5A 5IWGA 4BZ7A 1P8RA 4GSMA 4GWDA 4GSZA 3F0RA 2AEBA 2GH6A 3ZNRA 2VQMA 3DJ8A 4QA6A 5RLAA 1VKGA 4RHQA 5DC5A 5EFKB 3E9BA 4RHMA 4QA7A 1ZPEA 3NIQA 5EEIA 5G1BA 3E6VA 3NIOA 5THUA 2A0MA 5G0HA 2VQQA 1P8NA 1C3PA 1R1OA 4MYFA 5D1CA 1T4RA 1HQXA 1T67A 5G1AA 5ICNB 4GWCA 4LY1A 3SFHA 5FCWA 4FCKA 4ZUQA 3C0YA 1WVBA 3THHA 1TA1A 3EZTA 1HQGA 5DC6A 5D1BA
chains in the Genus database with same CATH topology
4IE2A 4G3HA 3MFVA 3THEA 3E6KA 4IU4A 3TF3A 1RLAA 1T4SA 2PHAA 4MXRA 3SJTA 1P8PA 3M1RA 1WVAA 1P8MA 4IU5A 4IU1A 4Q3RA 3CEVA 2RLAA 4Q3RC 1TBJA 1PQ3A 1T4TA 4RHJA 3TH7A 3SL0A 4IXVA 1D3VA 3SL1A 3KV2A 3THJA 2PHOA 4ITYA 5CEVA 4MYKA 1CEVA 3LP7A 4Q3QA 1TBHA 4FCIA 4Q3PA 4Q3UA 1GQ7A 1TBLA 1WOIA 3PZLA 4Q3SA 3LHLA 2EF4A 3LP4A 4RHLA 2CEVA 4DZ4A 4RLAA 4RHKA 4GSVA 1ZPGA 2ZAVA 1XFKA 4HXQA 2EF5A 4MYNA 3SKKA 2EIVA 3E8QA 3MJLA 4RHIA 5HJ9A 3GMZA 4IE3A 1P8QA 1T4PA 3MMRA 2PLLA 1P8OA 3F80A 4I06A 1P8SA 4CEVA 1HQFA 4Q41A 1WOHA 4Q42A 3GN0A 3MFWA 1T5GA 4IE1A 1T5FA 5HJAA 4HZEA 4MYLA 1HQHA 3NIPA 4Q3VA 1GQ6A 4Q3TA 1WOGA 4HWWA 3E8ZA 3RLAA 4Q40A 4IXUA 1HQ5A 1P8RA 4GSMA 4GWDA 4GSZA 2AEBA 5RLAA 3DJ8A 4RHQA 3E9BA 4RHMA 1ZPEA 3NIQA 3E6VA 3NIOA 2A0MA 1P8NA 1R1OA 4MYFA 1T4RA 1HQXA 4GWCA 4FCKA 1WVBA 3THHA 1TA1A 4IU0A 1HQGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IE2 A;  4G3H A;  3MFV A;  3THE A;  3E6K A;  4IU4 A;  3TF3 A;  1RLA A;  1T4S A;  2PHA A;  4MXR A;  3SJT A;  1P8P A;  3M1R A;  1WVA A;  1P8M A;  4IU5 A;  4IU1 A;  4Q3R A;  3CEV A;  2RLA A;  4Q3R C;  1TBJ A;  1PQ3 A;  1T4T A;  4RHJ A;  3TH7 A;  3SL0 A;  4IXV A;  1D3V A;  3SL1 A;  3KV2 A;  3THJ A;  2PHO A;  4ITY A;  5CEV A;  4MYK A;  1CEV A;  3LP7 A;  4Q3Q A;  1TBH A;  4FCI A;  4Q3P A;  4Q3U A;  1GQ7 A;  1TBL A;  1WOI A;  3PZL A;  4Q3S A;  3LHL A;  2EF4 A;  3LP4 A;  4RHL A;  2CEV A;  4DZ4 A;  4RLA A;  4RHK A;  4GSV A;  1ZPG A;  2ZAV A;  1XFK A;  4HXQ A;  2EF5 A;  4MYN A;  3SKK A;  2EIV A;  3E8Q A;  3MJL A;  4RHI A;  5HJ9 A;  3GMZ A;  4IE3 A;  1P8Q A;  1T4P A;  3MMR A;  2PLL A;  1P8O A;  3F80 A;  4I06 A;  1P8S A;  4CEV A;  1HQF A;  4Q41 A;  1WOH A;  4Q42 A;  3GN0 A;  3MFW A;  1T5G A;  4IE1 A;  1T5F A;  5HJA A;  4HZE A;  4MYL A;  1HQH A;  3NIP A;  4Q3V A;  1GQ6 A;  4Q3T A;  1WOG A;  4HWW A;  3E8Z A;  3RLA A;  4Q40 A;  4IXU A;  1HQ5 A;  1P8R A;  4GSM A;  4GWD A;  4GSZ A;  2AEB A;  5RLA A;  3DJ8 A;  4RHQ A;  3E9B A;  4RHM A;  1ZPE A;  3NIQ A;  3E6V A;  3NIO A;  2A0M A;  1P8N A;  1R1O A;  4MYF A;  1T4R A;  1HQX A;  4GWC A;  4FCK A;  1WVB A;  3THH A;  1TA1 A;  4IU0 A;  1HQG A; 
#chains in the Genus database with same CATH topology
 4IE2 A;  4G3H A;  2VQJ A;  4BZ5 A;  3Q9F A;  3MFV A;  4ZUP A;  1W22 A;  3F07 A;  3THE A;  3MAX A;  3E6K A;  4IU4 A;  3TF3 A;  1RLA A;  1T4S A;  2PHA A;  5BWZ A;  4MXR A;  5EEM A;  3SJT A;  3EZP A;  1P8P A;  2VQO A;  3M1R A;  1WVA A;  1P8M A;  5G0I A;  5G0X A;  4IU5 A;  4IU1 A;  4Q3R A;  3CEV A;  5G0Y A;  2RLA A;  5EEF A;  4Q3R C;  1TBJ A;  1PQ3 A;  1T4T A;  4RHJ A;  4CQF A;  3TH7 A;  5EF8 A;  3SL0 A;  4IXV A;  1D3V A;  5G0G A;  3SL1 A;  4ZUR A;  1T64 A;  3KV2 A;  5DC7 A;  1C3R A;  3THJ A;  2PHO A;  5JI5 A;  3C0Z A;  3EWF A;  4ITY A;  1CEV A;  3F06 A;  4MYK A;  3LP7 A;  4LXZ A;  4Q3Q A;  5EF7 A;  5LI3 A;  1TBH A;  2VQV A;  4FCI A;  4Q3P A;  3MZ6 A;  4Q3U A;  4A69 A;  1GQ7 A;  1TBL A;  4BKX B;  1WOI A;  3PZL A;  4Q3S A;  3LHL A;  5G10 A;  5FUE A;  2EF4 A;  1C3S A;  3LP4 A;  3Q9E A;  4QA5 A;  4RHL A;  5EEK A;  2CEV A;  5IX0 A;  5EFG A;  5D1D A;  4DZ4 A;  4RLA A;  4RHK A;  4GSV A;  1ZPG A;  2ZAV A;  4QA1 A;  5EFH A;  5THS A;  1ZZ0 A;  4BZ6 A;  5A2S A;  3Q9B A;  1ZZ3 A;  5G13 A;  1XFK A;  5CEV A;  3SFF A;  4HXQ A;  5EFB D;  2V5W A;  2EF5 A;  4MYN A;  3SKK A;  2EIV A;  3RQD A;  1T69 A;  5EEN A;  4CBY A;  3E8Q A;  3MJL A;  4RHI A;  3C10 A;  3Q9C A;  4RN0 A;  3GMZ A;  5DC8 A;  5HJ9 A;  4IE3 A;  2VCG A;  1P8Q A;  5THT A;  4BZ8 A;  5G0J A;  1T4P A;  3EW8 A;  3MMR A;  5G12 A;  2PLL A;  1P8O A;  4ZUN A;  4CBT A;  3F80 A;  3MZ7 A;  4QA2 A;  4I06 A;  1P8S A;  4CEV A;  5G1C A;  1HQF A;  4ZUO A;  5G3W A;  4Q41 A;  5G11 A;  1WOH A;  4Q42 A;  4QA4 A;  3GN0 A;  3MZ4 A;  3MFW A;  1T5G A;  4IE1 A;  2VQW G;  4RN2 A;  5G17 A;  1T5F A;  4RN1 A;  2V5X A;  5HJA A;  4QA0 A;  4HZE A;  3MZ3 A;  5EFN A;  5THV A;  4MYL A;  4QA3 A;  1HQH A;  3NIP A;  4Q3V A;  1GQ6 A;  3MEN A;  4BZ9 A;  4Q3T A;  1WOG A;  4HWW A;  1ZZ1 A;  3E8Z A;  5EFJ D;  4ZUM A;  3ZNS A;  3RLA A;  4Q40 A;  4IU0 A;  4IXU A;  1HQ5 A;  5IWG A;  4BZ7 A;  1P8R A;  4GSM A;  4GWD A;  4GSZ A;  3F0R A;  2AEB A;  2GH6 A;  3ZNR A;  2VQM A;  3DJ8 A;  4QA6 A;  5RLA A;  1VKG A;  4RHQ A;  5DC5 A;  5EFK B;  3E9B A;  4RHM A;  4QA7 A;  1ZPE A;  3NIQ A;  5EEI A;  5G1B A;  3E6V A;  3NIO A;  5THU A;  2A0M A;  5G0H A;  2VQQ A;  1P8N A;  1C3P A;  1R1O A;  4MYF A;  5D1C A;  1T4R A;  1HQX A;  1T67 A;  5G1A A;  5ICN B;  4GWC A;  4LY1 A;  3SFH A;  5FCW A;  4FCK A;  4ZUQ A;  3C0Y A;  1WVB A;  3THH A;  1TA1 A;  3EZT A;  1HQG A;  5DC6 A;  5D1B A; 
#chains in the Genus database with same CATH homology
 4IE2 A;  4G3H A;  3MFV A;  3THE A;  3E6K A;  4IU4 A;  3TF3 A;  1RLA A;  1T4S A;  2PHA A;  4MXR A;  3SJT A;  1P8P A;  3M1R A;  1WVA A;  1P8M A;  4IU5 A;  4IU1 A;  4Q3R A;  3CEV A;  2RLA A;  4Q3R C;  1TBJ A;  1PQ3 A;  1T4T A;  4RHJ A;  3TH7 A;  3SL0 A;  4IXV A;  1D3V A;  3SL1 A;  3KV2 A;  3THJ A;  2PHO A;  4ITY A;  5CEV A;  4MYK A;  1CEV A;  3LP7 A;  4Q3Q A;  1TBH A;  4FCI A;  4Q3P A;  4Q3U A;  1GQ7 A;  1TBL A;  1WOI A;  3PZL A;  4Q3S A;  3LHL A;  2EF4 A;  3LP4 A;  4RHL A;  2CEV A;  4DZ4 A;  4RLA A;  4RHK A;  4GSV A;  1ZPG A;  2ZAV A;  1XFK A;  4HXQ A;  2EF5 A;  4MYN A;  3SKK A;  2EIV A;  3E8Q A;  3MJL A;  4RHI A;  5HJ9 A;  3GMZ A;  4IE3 A;  1P8Q A;  1T4P A;  3MMR A;  2PLL A;  1P8O A;  3F80 A;  4I06 A;  1P8S A;  4CEV A;  1HQF A;  4Q41 A;  1WOH A;  4Q42 A;  3GN0 A;  3MFW A;  1T5G A;  4IE1 A;  1T5F A;  5HJA A;  4HZE A;  4MYL A;  1HQH A;  3NIP A;  4Q3V A;  1GQ6 A;  4Q3T A;  1WOG A;  4HWW A;  3E8Z A;  3RLA A;  4Q40 A;  4IXU A;  1HQ5 A;  1P8R A;  4GSM A;  4GWD A;  4GSZ A;  2AEB A;  5RLA A;  3DJ8 A;  4RHQ A;  3E9B A;  4RHM A;  1ZPE A;  3NIQ A;  3E6V A;  3NIO A;  2A0M A;  1P8N A;  1R1O A;  4MYF A;  1T4R A;  1HQX A;  4GWC A;  4FCK A;  1WVB A;  3THH A;  1TA1 A;  4IU0 A;  1HQG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...