The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
281
|
sequence length |
840
|
structure length |
830
|
Chain Sequence |
MKLSPREIEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQIMEFVRDGDKTVAQLMSIGRELLGRRQVLPAVPKLVESVQVEATFPDGTELVTIHDPIACENGNLELALLGSFLPVPSLDKFTANDEIPGEIIVVGGNLVLNDGRKAVILKVVNNGDRPVQVGSHYHFIELNPYLTFDRRKAYGMRLNIAAGNASRFEPGEKEVLLVSIGGNKVIRGGNAIADGPVNASNCIAAMQAVITRGFGHVEEANAAEGQTGEDASCPFTTVISREEYANKYGPTTGDKIRLGDTALFAEIEKDFAIYGDECTFGGGKVIRDGMGQSCGHPPALSLDTVITNAVIIDYSGIIKADIGIKDGLIHSIGKSGNPDVMDGVFQNMTTGVNTEVIAGEGLIVTAGAIDCHVHYICPQLVYEAVTSGITTLVGGGTGPTAGTRATTCTPAPIQMKLMLQSTDDLPLNFGFTGKGNCAKPDELHEIIKAGAMGLLHEDWGTTPAAIDSCLTIAEQYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGEKNVLPSSTNPTRPLTSNTIDEHVDMLMVHHLDANIAEDVAFSASRIREATIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTADKMKSARGPLQANDNFRIKRYVAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFFGAKPEMVIKGGEVAYANMGDPNASIPTPEPVKMRPMYGALGKAGGALSIAFVSKAALDQRVKVLYGLNKRVEAVSNVRKLTKLDMKLNDALPAITVDPDSYTVTADGVVLTCFVATTVPLSRNYFIF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and functional studies on urease from pigeon pea (Cajanus cajan)
pubmed doi rcsb |
| molecule keywords |
urease
|
| molecule tags |
Hydrolase
|
| total genus |
281
|
| structure length |
830
|
| sequence length |
840
|
| ec nomenclature |
ec
3.5.1.5: Urease. |
| pdb deposition date | 2012-07-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00449 | Urease_alpha | Urease alpha-subunit, N-terminal domain |
| B | PF00547 | Urease_gamma | Urease, gamma subunit |
| B | PF00699 | Urease_beta | Urease beta subunit |
| B | PF01979 | Amidohydro_1 | Amidohydrolase family |
| B | PF18473 | Urease_linker | Urease subunit beta-alpha linker domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Urease, subunit B | Urease, beta subunit | ||
| Mainly Beta | Roll | Urease, subunit C; domain 1 | Urease, subunit C, domain 1 | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | ||
| Alpha Beta | 2-Layer Sandwich | Urease; subunit A | Urease, gamma-like subunit |
