4G7RA

Structure of recombinant cytochrome ba3 oxidase mutant v236a from thermus thermophilus
Total Genus 227
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
227
sequence length
551
structure length
551
Chain Sequence
YEAYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVFALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTGHPIAYFWLLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLNPVPGWRLW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
publication title Structure of Recombinant Cytochrome ba3 Oxidase mutant V236A from Thermus thermophilus
rcsb
source organism Thermus thermophilus
total genus 227
structure length 551
sequence length 551
ec nomenclature ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date 2012-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 4g7rA00
1OCZA 3QJQA 3FYEA 4XYDA 4G7QA 1AR1A 1V54A 3ASOA 3DTUA 1FFTA 3WFDB 2OCCA 2YEVA 4G72A 3QJTA 1OCOA 3X2QA 3EH4A 3WFCB 2EINA 4G70A 2EIJA 1XMEA 3O0RB 1V55A 3QJUA 4GP8A 3AG1A 2ZXWA 3AG4A 4G7SA 4GP5A 1M57A 3HB3A 1QLEA 3AG2A 2Y69A 2DYRA 3ABMA 3WG7A 2EIKA 3OM3A 3ABKA 3AYGA 3QJSA 4G71A 3EH3A 3OMNA 3AG3A 1OCCA 5DJQA 3FYIA 2DYSA 1M56A 3ASNA 5B1BA 4FA7A 3WFBB 4FAAA 5B3SA 2GSMA 4G7RA 3S3DA 2QPEA 3OMIA 5B1AA 3S3BA 3S8GA 1OCRA 4N4YA 5IY5A 3WFEB 1EHKA 3ABLA 4GP4A 3S8FA 3OMAA 3S3CA 3QJVA 3QJRA 2EIMA 3BVDA 3EHBA 3AYFA 2QPDA 3MK7A 2EILA 3EH5A
chains in the Genus database with same CATH superfamily
1OCZA 3QJQA 3FYEA 4XYDA 4G7QA 1AR1A 1V54A 3ASOA 3DTUA 1FFTA 3WFDB 2OCCA 2YEVA 4G72A 3QJTA 1OCOA 3X2QA 3EH4A 3WFCB 2EINA 4G70A 2EIJA 1XMEA 3O0RB 1V55A 3QJUA 4GP8A 3AG1A 2ZXWA 3AG4A 4G7SA 4GP5A 1M57A 3HB3A 1QLEA 3AG2A 2Y69A 2DYRA 3ABMA 3WG7A 2EIKA 3OM3A 3ABKA 3AYGA 3QJSA 4G71A 3EH3A 3OMNA 3AG3A 1OCCA 5DJQA 3FYIA 2DYSA 1M56A 3ASNA 5B1BA 4FA7A 3WFBB 4FAAA 5B3SA 2GSMA 4G7RA 3S3DA 2QPEA 3OMIA 5B1AA 3S3BA 3S8GA 1OCRA 4N4YA 5IY5A 3WFEB 1EHKA 3ABLA 4GP4A 3S8FA 3OMAA 3S3CA 3QJVA 3QJRA 2EIMA 3BVDA 3EHBA 3AYFA 2QPDA 3MK7A 2EILA 3EH5A
chains in the Genus database with same CATH topology
1OCZA 3QJQA 3FYEA 4XYDA 4G7QA 1AR1A 1V54A 3ASOA 3DTUA 1FFTA 3WFDB 2OCCA 2YEVA 4G72A 3QJTA 1OCOA 3X2QA 3EH4A 3WFCB 2EINA 4G70A 2EIJA 1XMEA 3O0RB 1V55A 3QJUA 4GP8A 3AG1A 2ZXWA 3AG4A 4G7SA 4GP5A 1M57A 3HB3A 1QLEA 3AG2A 2Y69A 2DYRA 3ABMA 3WG7A 2EIKA 3OM3A 3ABKA 3AYGA 3QJSA 4G71A 3EH3A 3OMNA 3AG3A 1OCCA 5DJQA 3FYIA 2DYSA 1M56A 3ASNA 5B1BA 4FA7A 3WFBB 4FAAA 5B3SA 2GSMA 4G7RA 3S3DA 2QPEA 3OMIA 5B1AA 3S3BA 3S8GA 1OCRA 4N4YA 5IY5A 3WFEB 1EHKA 3ABLA 4GP4A 3S8FA 3OMAA 3S3CA 3QJVA 3QJRA 2EIMA 3BVDA 3EHBA 3AYFA 2QPDA 3MK7A 2EILA 3EH5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OCZ A;  3QJQ A;  3FYE A;  4XYD A;  4G7Q A;  1AR1 A;  1V54 A;  3ASO A;  3DTU A;  1FFT A;  3WFD B;  2OCC A;  2YEV A;  4G72 A;  3QJT A;  1OCO A;  3X2Q A;  3EH4 A;  3WFC B;  2EIN A;  4G70 A;  2EIJ A;  1XME A;  3O0R B;  1V55 A;  3QJU A;  4GP8 A;  3AG1 A;  2ZXW A;  3AG4 A;  4G7S A;  4GP5 A;  1M57 A;  3HB3 A;  1QLE A;  3AG2 A;  2Y69 A;  2DYR A;  3ABM A;  3WG7 A;  2EIK A;  3OM3 A;  3ABK A;  3AYG A;  3QJS A;  4G71 A;  3EH3 A;  3OMN A;  3AG3 A;  1OCC A;  5DJQ A;  3FYI A;  2DYS A;  1M56 A;  3ASN A;  5B1B A;  4FA7 A;  3WFB B;  4FAA A;  5B3S A;  2GSM A;  4G7R A;  3S3D A;  2QPE A;  3OMI A;  5B1A A;  3S3B A;  3S8G A;  1OCR A;  4N4Y A;  5IY5 A;  3WFE B;  1EHK A;  3ABL A;  4GP4 A;  3S8F A;  3OMA A;  3S3C A;  3QJV A;  3QJR A;  2EIM A;  3BVD A;  3EHB A;  3AYF A;  2QPD A;  3MK7 A;  2EIL A;  3EH5 A; 
#chains in the Genus database with same CATH topology
 1OCZ A;  3QJQ A;  3FYE A;  4XYD A;  4G7Q A;  1AR1 A;  1V54 A;  3ASO A;  3DTU A;  1FFT A;  3WFD B;  2OCC A;  2YEV A;  4G72 A;  3QJT A;  1OCO A;  3X2Q A;  3EH4 A;  3WFC B;  2EIN A;  4G70 A;  2EIJ A;  1XME A;  3O0R B;  1V55 A;  3QJU A;  4GP8 A;  3AG1 A;  2ZXW A;  3AG4 A;  4G7S A;  4GP5 A;  1M57 A;  3HB3 A;  1QLE A;  3AG2 A;  2Y69 A;  2DYR A;  3ABM A;  3WG7 A;  2EIK A;  3OM3 A;  3ABK A;  3AYG A;  3QJS A;  4G71 A;  3EH3 A;  3OMN A;  3AG3 A;  1OCC A;  5DJQ A;  3FYI A;  2DYS A;  1M56 A;  3ASN A;  5B1B A;  4FA7 A;  3WFB B;  4FAA A;  5B3S A;  2GSM A;  4G7R A;  3S3D A;  2QPE A;  3OMI A;  5B1A A;  3S3B A;  3S8G A;  1OCR A;  4N4Y A;  5IY5 A;  3WFE B;  1EHK A;  3ABL A;  4GP4 A;  3S8F A;  3OMA A;  3S3C A;  3QJV A;  3QJR A;  2EIM A;  3BVD A;  3EHB A;  3AYF A;  2QPD A;  3MK7 A;  2EIL A;  3EH5 A; 
#chains in the Genus database with same CATH homology
 1OCZ A;  3QJQ A;  3FYE A;  4XYD A;  4G7Q A;  1AR1 A;  1V54 A;  3ASO A;  3DTU A;  1FFT A;  3WFD B;  2OCC A;  2YEV A;  4G72 A;  3QJT A;  1OCO A;  3X2Q A;  3EH4 A;  3WFC B;  2EIN A;  4G70 A;  2EIJ A;  1XME A;  3O0R B;  1V55 A;  3QJU A;  4GP8 A;  3AG1 A;  2ZXW A;  3AG4 A;  4G7S A;  4GP5 A;  1M57 A;  3HB3 A;  1QLE A;  3AG2 A;  2Y69 A;  2DYR A;  3ABM A;  3WG7 A;  2EIK A;  3OM3 A;  3ABK A;  3AYG A;  3QJS A;  4G71 A;  3EH3 A;  3OMN A;  3AG3 A;  1OCC A;  5DJQ A;  3FYI A;  2DYS A;  1M56 A;  3ASN A;  5B1B A;  4FA7 A;  3WFB B;  4FAA A;  5B3S A;  2GSM A;  4G7R A;  3S3D A;  2QPE A;  3OMI A;  5B1A A;  3S3B A;  3S8G A;  1OCR A;  4N4Y A;  5IY5 A;  3WFE B;  1EHK A;  3ABL A;  4GP4 A;  3S8F A;  3OMA A;  3S3C A;  3QJV A;  3QJR A;  2EIM A;  3BVD A;  3EHB A;  3AYF A;  2QPD A;  3MK7 A;  2EIL A;  3EH5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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