4G8PA

Rat heme oxygenase-1 in complex with heme and co with 16 hr illumination: laser on
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
213
structure length
213
Chain Sequence
QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title Discrimination between CO and O2 in Heme Oxygenase: Comparison of Static Structures and Dynamic Conformation Changes following CO Photolysis
pubmed doi rcsb
source organism Rattus norvegicus
total genus 90
structure length 213
sequence length 213
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2012-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 4g8pA00
1RTWA 2A6BA 1XK2A 1NI6A 1XJZA 1WZFA 1WZDA 1WWMA 1S13A 1OZWA 2E7EA 1VGIA 1N45A 4G8UA 1XK0A 3B5PA 4WWZA 2QZCA 1OTWA 1WNVA 4WD4A 1WOWA 1Z72A 3I9UA 1WZGA 4GPCA 4G7LA 1J02A 3CZYA 1WNWA 1V8XA 3HOKA 2Q32A 1DVGA 1J77A 2F2GA 2Z68A 1SK7A 1ULXA 1WE1A 4GPFA 1IVJA 1P3VA 3DDEA 4GPHA 1TWRA 1IX4A 4WMHA 1P3UA 4G98A 2RGZA 3IBXA 4RAJA 3TGMA 2Q4XA 3BJDA 3OQLA 4WWJA 3MVUA 1OTVA 1RCWA 3NO6A 1OZLA 1OYKA 1WOXA 5BTQA 4G7UA 1TYHA 1XK3A 4G99A 1TO9A 1YAFA 1TWNA 3B5OA 4LQXA 4G8PA 2QPPA 1WOVA 4WX0A 3RM5A 2GM7A 2DY5A 4FN6A 3HMLA 1WNXA 2RD3A 1IW1A 3I8RA 3MOOA 3HNHA 1DVEA 2A2OA 2A2MA 2GM8A 1TO9B 4G7PA 1UBBA 1OZEA 1J2CA 1N3UA 4G7TA 1T5PA 4G8WA 3I9TA 1P3TA 1UDDA 2ZVUA 1OZRA 4MECA 4NY7A 3HLXA 3K4FA 1S8CA 1XK1A 1IW0A 2QCXA 1IRMA 1OYLA 1IX3A 1YAKA 4GOHA
chains in the Genus database with same CATH superfamily
1RTWA 2A6BA 1XK2A 1NI6A 1XJZA 1WZFA 1WZDA 1WWMA 1S13A 1OZWA 2E7EA 1VGIA 1N45A 4G8UA 1XK0A 3B5PA 4WWZA 2QZCA 1OTWA 1WNVA 4WD4A 1WOWA 1Z72A 3I9UA 1WZGA 4GPCA 4G7LA 1J02A 3CZYA 1WNWA 1V8XA 3HOKA 2Q32A 1DVGA 1J77A 2F2GA 2Z68A 1SK7A 1ULXA 1WE1A 4GPFA 1IVJA 1P3VA 3DDEA 4GPHA 1TWRA 1IX4A 4WMHA 1P3UA 4G98A 2RGZA 2LCUA 3IBXA 4RAJA 3TGMA 2Q4XA 3BJDA 3OQLA 4WWJA 3MVUA 1OTVA 1RCWA 3NO6A 1OZLA 1OYKA 1WOXA 5BTQA 4G7UA 1TYHA 1XK3A 4G99A 1TO9A 1YAFA 1TWNA 3B5OA 4LQXA 4G8PA 2QPPA 1WOVA 4WX0A 3RM5A 2GM7A 2DY5A 4FN6A 3HMLA 1WNXA 2RD3A 1IW1A 3I8RA 3MOOA 3HNHA 1DVEA 2A2OA 2A2MA 2GM8A 1TO9B 4G7PA 1UBBA 1OZEA 1J2CA 1N3UA 4G7TA 1T5PA 4G8WA 3I9TA 1P3TA 1UDDA 2ZVUA 1OZRA 4MECA 4NY7A 3HLXA 3K4FA 1S8CA 1XK1A 1IW0A 2QCXA 1IRMA 1OYLA 1IX3A 1YAKA 4GOHA
chains in the Genus database with same CATH topology
1RTWA 2A6BA 1XK2A 1NI6A 1XJZA 1WZFA 1WZDA 1WWMA 1S13A 1OZWA 2E7EA 1VGIA 1N45A 4G8UA 1XK0A 3B5PA 4WWZA 2QZCA 1OTWA 1WNVA 4WD4A 1WOWA 1Z72A 3I9UA 1WZGA 4GPCA 4G7LA 1J02A 3CZYA 1WNWA 1V8XA 3HOKA 2Q32A 1DVGA 1J77A 2F2GA 2Z68A 1SK7A 1ULXA 1WE1A 4GPFA 1IVJA 1P3VA 3DDEA 4GPHA 1TWRA 1IX4A 4WMHA 1P3UA 4G98A 2RGZA 3IBXA 4RAJA 3TGMA 2Q4XA 3BJDA 3OQLA 4WWJA 3MVUA 1OTVA 1RCWA 3NO6A 1OZLA 1OYKA 1WOXA 5BTQA 4G7UA 1TYHA 1XK3A 4G99A 1TO9A 1YAFA 1TWNA 3B5OA 4LQXA 4G8PA 2QPPA 1WOVA 4WX0A 3RM5A 2GM7A 2DY5A 4FN6A 3HMLA 1WNXA 2RD3A 1IW1A 3I8RA 3MOOA 3HNHA 1DVEA 2A2OA 2A2MA 2GM8A 1TO9B 4G7PA 1UBBA 1OZEA 1J2CA 1N3UA 4G7TA 1T5PA 4G8WA 3I9TA 1P3TA 1UDDA 2ZVUA 1OZRA 4MECA 4NY7A 3HLXA 3K4FA 1S8CA 1XK1A 1IW0A 2QCXA 1IRMA 1OYLA 1IX3A 1YAKA 4GOHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RTW A;  2A6B A;  1XK2 A;  1NI6 A;  1XJZ A;  1WZF A;  1WZD A;  1WWM A;  1S13 A;  1OZW A;  2E7E A;  1VGI A;  1N45 A;  4G8U A;  1XK0 A;  3B5P A;  4WWZ A;  2QZC A;  1OTW A;  1WNV A;  4WD4 A;  1WOW A;  1Z72 A;  3I9U A;  1WZG A;  4GPC A;  4G7L A;  1J02 A;  3CZY A;  1WNW A;  1V8X A;  3HOK A;  2Q32 A;  1DVG A;  1J77 A;  2F2G A;  2Z68 A;  1SK7 A;  1ULX A;  1WE1 A;  4GPF A;  1IVJ A;  1P3V A;  3DDE A;  4GPH A;  1TWR A;  1IX4 A;  4WMH A;  1P3U A;  4G98 A;  2RGZ A;  3IBX A;  4RAJ A;  3TGM A;  2Q4X A;  3BJD A;  3OQL A;  4WWJ A;  3MVU A;  1OTV A;  1RCW A;  3NO6 A;  1OZL A;  1OYK A;  1WOX A;  5BTQ A;  4G7U A;  1TYH A;  1XK3 A;  4G99 A;  1TO9 A;  1YAF A;  1TWN A;  3B5O A;  4LQX A;  4G8P A;  2QPP A;  1WOV A;  4WX0 A;  3RM5 A;  2GM7 A;  2DY5 A;  4FN6 A;  3HML A;  1WNX A;  2RD3 A;  1IW1 A;  3I8R A;  3MOO A;  3HNH A;  1DVE A;  2A2O A;  2A2M A;  2GM8 A;  1TO9 B;  4G7P A;  1UBB A;  1OZE A;  1J2C A;  1N3U A;  4G7T A;  1T5P A;  4G8W A;  3I9T A;  1P3T A;  1UDD A;  2ZVU A;  1OZR A;  4MEC A;  4NY7 A;  3HLX A;  3K4F A;  1S8C A;  1XK1 A;  1IW0 A;  2QCX A;  1IRM A;  1OYL A;  1IX3 A;  1YAK A;  4GOH A; 
#chains in the Genus database with same CATH topology
 1RTW A;  2A6B A;  1XK2 A;  1NI6 A;  1XJZ A;  1WZF A;  1WZD A;  1WWM A;  1S13 A;  1OZW A;  2E7E A;  1VGI A;  1N45 A;  4G8U A;  1XK0 A;  3B5P A;  4WWZ A;  2QZC A;  1OTW A;  1WNV A;  4WD4 A;  1WOW A;  1Z72 A;  3I9U A;  1WZG A;  4GPC A;  4G7L A;  1J02 A;  3CZY A;  1WNW A;  1V8X A;  3HOK A;  2Q32 A;  1DVG A;  1J77 A;  2F2G A;  2Z68 A;  1SK7 A;  1ULX A;  1WE1 A;  4GPF A;  1IVJ A;  1P3V A;  3DDE A;  4GPH A;  1TWR A;  1IX4 A;  4WMH A;  1P3U A;  4G98 A;  2RGZ A;  2LCU A;  3IBX A;  4RAJ A;  3TGM A;  2Q4X A;  3BJD A;  3OQL A;  4WWJ A;  3MVU A;  1OTV A;  1RCW A;  3NO6 A;  1OZL A;  1OYK A;  1WOX A;  5BTQ A;  4G7U A;  1TYH A;  1XK3 A;  4G99 A;  1TO9 A;  1YAF A;  1TWN A;  3B5O A;  4LQX A;  4G8P A;  2QPP A;  1WOV A;  4WX0 A;  3RM5 A;  2GM7 A;  2DY5 A;  4FN6 A;  3HML A;  1WNX A;  2RD3 A;  1IW1 A;  3I8R A;  3MOO A;  3HNH A;  1DVE A;  2A2O A;  2A2M A;  2GM8 A;  1TO9 B;  4G7P A;  1UBB A;  1OZE A;  1J2C A;  1N3U A;  4G7T A;  1T5P A;  4G8W A;  3I9T A;  1P3T A;  1UDD A;  2ZVU A;  1OZR A;  4MEC A;  4NY7 A;  3HLX A;  3K4F A;  1S8C A;  1XK1 A;  1IW0 A;  2QCX A;  1IRM A;  1OYL A;  1IX3 A;  1YAK A;  4GOH A; 
#chains in the Genus database with same CATH homology
 1RTW A;  2A6B A;  1XK2 A;  1NI6 A;  1XJZ A;  1WZF A;  1WZD A;  1WWM A;  1S13 A;  1OZW A;  2E7E A;  1VGI A;  1N45 A;  4G8U A;  1XK0 A;  3B5P A;  4WWZ A;  2QZC A;  1OTW A;  1WNV A;  4WD4 A;  1WOW A;  1Z72 A;  3I9U A;  1WZG A;  4GPC A;  4G7L A;  1J02 A;  3CZY A;  1WNW A;  1V8X A;  3HOK A;  2Q32 A;  1DVG A;  1J77 A;  2F2G A;  2Z68 A;  1SK7 A;  1ULX A;  1WE1 A;  4GPF A;  1IVJ A;  1P3V A;  3DDE A;  4GPH A;  1TWR A;  1IX4 A;  4WMH A;  1P3U A;  4G98 A;  2RGZ A;  3IBX A;  4RAJ A;  3TGM A;  2Q4X A;  3BJD A;  3OQL A;  4WWJ A;  3MVU A;  1OTV A;  1RCW A;  3NO6 A;  1OZL A;  1OYK A;  1WOX A;  5BTQ A;  4G7U A;  1TYH A;  1XK3 A;  4G99 A;  1TO9 A;  1YAF A;  1TWN A;  3B5O A;  4LQX A;  4G8P A;  2QPP A;  1WOV A;  4WX0 A;  3RM5 A;  2GM7 A;  2DY5 A;  4FN6 A;  3HML A;  1WNX A;  2RD3 A;  1IW1 A;  3I8R A;  3MOO A;  3HNH A;  1DVE A;  2A2O A;  2A2M A;  2GM8 A;  1TO9 B;  4G7P A;  1UBB A;  1OZE A;  1J2C A;  1N3U A;  4G7T A;  1T5P A;  4G8W A;  3I9T A;  1P3T A;  1UDD A;  2ZVU A;  1OZR A;  4MEC A;  4NY7 A;  3HLX A;  3K4F A;  1S8C A;  1XK1 A;  1IW0 A;  2QCX A;  1IRM A;  1OYL A;  1IX3 A;  1YAK A;  4GOH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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