4G8WA

Rat heme oxygenase-1 in complex with heme and o2 with 13 hr illumination: laser on
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
213
structure length
213
Chain Sequence
QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Heme oxygenase 1
publication title Discrimination between CO and O2 in Heme Oxygenase: Comparison of Static Structures and Dynamic Conformation Changes following CO Photolysis
pubmed doi rcsb
source organism Rattus norvegicus
total genus 89
structure length 213
sequence length 213
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2012-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 4g8wA00
2QCXA 4NY7A 2Z68A 4GPHA 4G7UA 1OZRA 1IRMA 1Z72A 1WWMA 3CZYA 2RD3A 1RTWA 1VGIA 3HLXA 1S13A 4WX0A 3HOKA 4WWJA 3RM5A 1WOVA 2QPPA 1WNXA 1N3UA 3K4FA 1OYLA 4G98A 1WOWA 1WNWA 1S8CA 1WNVA 3OQLA 2A6BA 4G7LA 4G8WA 1UBBA 2RGZA 1UDDA 4WWZA 1NI6A 1IVJA 1P3TA 1DVGA 1WE1A 4GPCA 1WZFA 2GM7A 1DVEA 1IW0A 4WMHA 1OTVA 1IX4A 4FN6A 2DY5A 3I9TA 1P3UA 4GOHA 1IW1A 1XJZA 1OZEA 1YAKA 1J02A 4GPFA 3NO6A 1WZGA 1OTWA 5BTQA 3DDEA 1WZDA 1J77A 2Q32A 1TWNA 2GM8A 2E7EA 2Q4XA 1IX3A 1OZWA 4WD4A 3HMLA 3I8RA 3I9UA 1XK0A 4G99A 3IBXA 4LQXA 3BJDA 4G7TA 1P3VA 1T5PA 4G8PA 2ZVUA 1RCWA 3B5OA 2A2MA 1TYHA 4G7PA 1XK1A 1YAFA 1N45A 3TGMA 3B5PA 1OZLA 1XK2A 1J2CA 1TWRA 1WOXA 2A2OA 4MECA 1TO9B 1V8XA 1OYKA 3MVUA 1TO9A 3HNHA 3MOOA 1SK7A 4RAJA 2QZCA 2F2GA 4G8UA 1ULXA 1XK3A
chains in the Genus database with same CATH superfamily
2QCXA 4NY7A 2Z68A 4GPHA 4G7UA 1OZRA 1IRMA 1Z72A 1WWMA 3CZYA 2RD3A 1RTWA 1VGIA 3HLXA 1S13A 4WX0A 3HOKA 4WWJA 3RM5A 1WOVA 2QPPA 1WNXA 1N3UA 2LCUA 3K4FA 1OYLA 4G98A 1WOWA 1WNWA 1S8CA 1WNVA 3OQLA 2A6BA 4G7LA 4G8WA 1UBBA 2RGZA 1UDDA 4WWZA 1NI6A 1IVJA 1P3TA 1DVGA 1WE1A 4GPCA 1WZFA 2GM7A 1DVEA 1IW0A 4WMHA 1OTVA 1IX4A 4FN6A 2DY5A 3I9TA 1P3UA 4GOHA 1IW1A 1XJZA 1OZEA 1YAKA 1J02A 4GPFA 3NO6A 1WZGA 1OTWA 5BTQA 3DDEA 1WZDA 1J77A 2Q32A 1TWNA 2GM8A 2E7EA 2Q4XA 1IX3A 1OZWA 4WD4A 3HMLA 3I8RA 3I9UA 1XK0A 4G99A 3IBXA 4LQXA 3BJDA 4G7TA 1P3VA 1T5PA 4G8PA 2ZVUA 1RCWA 3B5OA 2A2MA 1TYHA 4G7PA 1XK1A 1YAFA 1N45A 3TGMA 3B5PA 1OZLA 1XK2A 1J2CA 1TWRA 1WOXA 2A2OA 4MECA 1TO9B 1V8XA 1OYKA 3MVUA 1TO9A 3HNHA 3MOOA 1SK7A 4RAJA 2QZCA 2F2GA 4G8UA 1ULXA 1XK3A
chains in the Genus database with same CATH topology
2QCXA 4NY7A 2Z68A 4GPHA 4G7UA 1OZRA 1IRMA 1Z72A 1WWMA 3CZYA 2RD3A 1RTWA 1VGIA 3HLXA 1S13A 4WX0A 3HOKA 4WWJA 3RM5A 1WOVA 2QPPA 1WNXA 1N3UA 3K4FA 1OYLA 4G98A 1WOWA 1WNWA 1S8CA 1WNVA 3OQLA 2A6BA 4G7LA 4G8WA 1UBBA 2RGZA 1UDDA 4WWZA 1NI6A 1IVJA 1P3TA 1DVGA 1WE1A 4GPCA 1WZFA 2GM7A 1DVEA 1IW0A 4WMHA 1OTVA 1IX4A 4FN6A 2DY5A 3I9TA 1P3UA 4GOHA 1IW1A 1XJZA 1OZEA 1YAKA 1J02A 4GPFA 3NO6A 1WZGA 1OTWA 5BTQA 3DDEA 1WZDA 1J77A 2Q32A 1TWNA 2GM8A 2E7EA 2Q4XA 1IX3A 1OZWA 4WD4A 3HMLA 3I8RA 3I9UA 1XK0A 4G99A 3IBXA 4LQXA 3BJDA 4G7TA 1P3VA 1T5PA 4G8PA 2ZVUA 1RCWA 3B5OA 2A2MA 1TYHA 4G7PA 1XK1A 1YAFA 1N45A 3TGMA 3B5PA 1OZLA 1XK2A 1J2CA 1TWRA 1WOXA 2A2OA 4MECA 1TO9B 1V8XA 1OYKA 3MVUA 1TO9A 3HNHA 3MOOA 1SK7A 4RAJA 2QZCA 2F2GA 4G8UA 1ULXA 1XK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QCX A;  4NY7 A;  2Z68 A;  4GPH A;  4G7U A;  1OZR A;  1IRM A;  1Z72 A;  1WWM A;  3CZY A;  2RD3 A;  1RTW A;  1VGI A;  3HLX A;  1S13 A;  4WX0 A;  3HOK A;  4WWJ A;  3RM5 A;  1WOV A;  2QPP A;  1WNX A;  1N3U A;  3K4F A;  1OYL A;  4G98 A;  1WOW A;  1WNW A;  1S8C A;  1WNV A;  3OQL A;  2A6B A;  4G7L A;  4G8W A;  1UBB A;  2RGZ A;  1UDD A;  4WWZ A;  1NI6 A;  1IVJ A;  1P3T A;  1DVG A;  1WE1 A;  4GPC A;  1WZF A;  2GM7 A;  1DVE A;  1IW0 A;  4WMH A;  1OTV A;  1IX4 A;  4FN6 A;  2DY5 A;  3I9T A;  1P3U A;  4GOH A;  1IW1 A;  1XJZ A;  1OZE A;  1YAK A;  1J02 A;  4GPF A;  3NO6 A;  1WZG A;  1OTW A;  5BTQ A;  3DDE A;  1WZD A;  1J77 A;  2Q32 A;  1TWN A;  2GM8 A;  2E7E A;  2Q4X A;  1IX3 A;  1OZW A;  4WD4 A;  3HML A;  3I8R A;  3I9U A;  1XK0 A;  4G99 A;  3IBX A;  4LQX A;  3BJD A;  4G7T A;  1P3V A;  1T5P A;  4G8P A;  2ZVU A;  1RCW A;  3B5O A;  2A2M A;  1TYH A;  4G7P A;  1XK1 A;  1YAF A;  1N45 A;  3TGM A;  3B5P A;  1OZL A;  1XK2 A;  1J2C A;  1TWR A;  1WOX A;  2A2O A;  4MEC A;  1TO9 B;  1V8X A;  1OYK A;  3MVU A;  1TO9 A;  3HNH A;  3MOO A;  1SK7 A;  4RAJ A;  2QZC A;  2F2G A;  4G8U A;  1ULX A;  1XK3 A; 
#chains in the Genus database with same CATH topology
 2QCX A;  4NY7 A;  2Z68 A;  4GPH A;  4G7U A;  1OZR A;  1IRM A;  1Z72 A;  1WWM A;  3CZY A;  2RD3 A;  1RTW A;  1VGI A;  3HLX A;  1S13 A;  4WX0 A;  3HOK A;  4WWJ A;  3RM5 A;  1WOV A;  2QPP A;  1WNX A;  1N3U A;  2LCU A;  3K4F A;  1OYL A;  4G98 A;  1WOW A;  1WNW A;  1S8C A;  1WNV A;  3OQL A;  2A6B A;  4G7L A;  4G8W A;  1UBB A;  2RGZ A;  1UDD A;  4WWZ A;  1NI6 A;  1IVJ A;  1P3T A;  1DVG A;  1WE1 A;  4GPC A;  1WZF A;  2GM7 A;  1DVE A;  1IW0 A;  4WMH A;  1OTV A;  1IX4 A;  4FN6 A;  2DY5 A;  3I9T A;  1P3U A;  4GOH A;  1IW1 A;  1XJZ A;  1OZE A;  1YAK A;  1J02 A;  4GPF A;  3NO6 A;  1WZG A;  1OTW A;  5BTQ A;  3DDE A;  1WZD A;  1J77 A;  2Q32 A;  1TWN A;  2GM8 A;  2E7E A;  2Q4X A;  1IX3 A;  1OZW A;  4WD4 A;  3HML A;  3I8R A;  3I9U A;  1XK0 A;  4G99 A;  3IBX A;  4LQX A;  3BJD A;  4G7T A;  1P3V A;  1T5P A;  4G8P A;  2ZVU A;  1RCW A;  3B5O A;  2A2M A;  1TYH A;  4G7P A;  1XK1 A;  1YAF A;  1N45 A;  3TGM A;  3B5P A;  1OZL A;  1XK2 A;  1J2C A;  1TWR A;  1WOX A;  2A2O A;  4MEC A;  1TO9 B;  1V8X A;  1OYK A;  3MVU A;  1TO9 A;  3HNH A;  3MOO A;  1SK7 A;  4RAJ A;  2QZC A;  2F2G A;  4G8U A;  1ULX A;  1XK3 A; 
#chains in the Genus database with same CATH homology
 2QCX A;  4NY7 A;  2Z68 A;  4GPH A;  4G7U A;  1OZR A;  1IRM A;  1Z72 A;  1WWM A;  3CZY A;  2RD3 A;  1RTW A;  1VGI A;  3HLX A;  1S13 A;  4WX0 A;  3HOK A;  4WWJ A;  3RM5 A;  1WOV A;  2QPP A;  1WNX A;  1N3U A;  3K4F A;  1OYL A;  4G98 A;  1WOW A;  1WNW A;  1S8C A;  1WNV A;  3OQL A;  2A6B A;  4G7L A;  4G8W A;  1UBB A;  2RGZ A;  1UDD A;  4WWZ A;  1NI6 A;  1IVJ A;  1P3T A;  1DVG A;  1WE1 A;  4GPC A;  1WZF A;  2GM7 A;  1DVE A;  1IW0 A;  4WMH A;  1OTV A;  1IX4 A;  4FN6 A;  2DY5 A;  3I9T A;  1P3U A;  4GOH A;  1IW1 A;  1XJZ A;  1OZE A;  1YAK A;  1J02 A;  4GPF A;  3NO6 A;  1WZG A;  1OTW A;  5BTQ A;  3DDE A;  1WZD A;  1J77 A;  2Q32 A;  1TWN A;  2GM8 A;  2E7E A;  2Q4X A;  1IX3 A;  1OZW A;  4WD4 A;  3HML A;  3I8R A;  3I9U A;  1XK0 A;  4G99 A;  3IBX A;  4LQX A;  3BJD A;  4G7T A;  1P3V A;  1T5P A;  4G8P A;  2ZVU A;  1RCW A;  3B5O A;  2A2M A;  1TYH A;  4G7P A;  1XK1 A;  1YAF A;  1N45 A;  3TGM A;  3B5P A;  1OZL A;  1XK2 A;  1J2C A;  1TWR A;  1WOX A;  2A2O A;  4MEC A;  1TO9 B;  1V8X A;  1OYK A;  3MVU A;  1TO9 A;  3HNH A;  3MOO A;  1SK7 A;  4RAJ A;  2QZC A;  2F2G A;  4G8U A;  1ULX A;  1XK3 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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