4G9QA

Crystal structure of a 4-carboxymuconolactone decarboxylase
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
238
structure length
238
Chain Sequence
QQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPGLNRRDRSLVTIAALIARGEAPALTYYADQALENGVKPSEISETITHLAYYSGWGKAMATVGPVSEAFAKRGIGQDQLAAVESTPLPLDEEAEAQRATTVGNQFGSVAPGLVQYTTDYLFRDLWLRPDLAPRDRSLVTIAALISVGQVEQITFHLNKALDNGLSEEQAAEVITHLAFYAGWPNAMSALPVAKAVFEKRRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a 4-carboxymuconolactone decarboxylase
rcsb
molecule tags Lyase
source organism Sinorhizobium meliloti
molecule keywords 4-carboxymuconolactone decarboxylase
total genus 93
structure length 238
sequence length 238
ec nomenclature
pdb deposition date 2012-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 4g9qA00
5DIKA 1KNCA 2IJCA 2OUWA 1VKEA 1ME5A 2PRRA 2QEUA 3D7IA 2AF7A 4G9QA 2OYOA 2CWQA 3BEYA 2PFXA 3LVYA 5DIPA 1P8CA 2GMYA 1LW1A 3C1LA 2O4DA 2Q0TA 1GU9A
chains in the Genus database with same CATH superfamily
5DIKA 1KNCA 3LK41 2ES9A 2IJCA 2OUWA 3AA0A 1VKEA 5AFUK 1IZNA 3AA1A 3AAEA 1ME5A 3LK2A 2PRRA 2QEUA 3D7IA 2KXPA 2AF7A 3LK3A 4G9QA 2OYOA 2CWQA 3BEYA 3AA7A 2JN8A 2PFXA 3LVYA 2KZ7A 5DIPA 1P8CA 3AA6A 5ADXK 2GMYA 1LW1A 3C1LA 4AKRA 2O4DA 2Q0TA 1GU9A 3AAAA
chains in the Genus database with same CATH topology
5DIKA 1KNCA 3LK41 2ES9A 2IJCA 2OUWA 3AA0A 1VKEA 5AFUK 1IZNA 3AA1A 3AAEA 1ME5A 3LK2A 2PRRA 2QEUA 3D7IA 2KXPA 2AF7A 3LK3A 4G9QA 2OYOA 2CWQA 3BEYA 3AA7A 2JN8A 2PFXA 3LVYA 2KZ7A 5DIPA 1P8CA 3AA6A 5ADXK 2GMYA 1LW1A 3C1LA 4AKRA 2O4DA 2Q0TA 1GU9A 3AAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DIK A;  1KNC A;  2IJC A;  2OUW A;  1VKE A;  1ME5 A;  2PRR A;  2QEU A;  3D7I A;  2AF7 A;  4G9Q A;  2OYO A;  2CWQ A;  3BEY A;  2PFX A;  3LVY A;  5DIP A;  1P8C A;  2GMY A;  1LW1 A;  3C1L A;  2O4D A;  2Q0T A;  1GU9 A; 
#chains in the Genus database with same CATH topology
 5DIK A;  1KNC A;  3LK4 1;  2ES9 A;  2IJC A;  2OUW A;  3AA0 A;  1VKE A;  5AFU K;  1IZN A;  3AA1 A;  3AAE A;  1ME5 A;  3LK2 A;  2PRR A;  2QEU A;  3D7I A;  2KXP A;  2AF7 A;  3LK3 A;  4G9Q A;  2OYO A;  2CWQ A;  3BEY A;  3AA7 A;  2JN8 A;  2PFX A;  3LVY A;  2KZ7 A;  5DIP A;  1P8C A;  3AA6 A;  5ADX K;  2GMY A;  1LW1 A;  3C1L A;  4AKR A;  2O4D A;  2Q0T A;  1GU9 A;  3AAA A; 
#chains in the Genus database with same CATH homology
 5DIK A;  1KNC A;  3LK4 1;  2ES9 A;  2IJC A;  2OUW A;  3AA0 A;  1VKE A;  5AFU K;  1IZN A;  3AA1 A;  3AAE A;  1ME5 A;  3LK2 A;  2PRR A;  2QEU A;  3D7I A;  2KXP A;  2AF7 A;  3LK3 A;  4G9Q A;  2OYO A;  2CWQ A;  3BEY A;  3AA7 A;  2JN8 A;  2PFX A;  3LVY A;  2KZ7 A;  5DIP A;  1P8C A;  3AA6 A;  5ADX K;  2GMY A;  1LW1 A;  3C1L A;  4AKR A;  2O4D A;  2Q0T A;  1GU9 A;  3AAA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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