4GA4A

Crystal structure of amp phosphorylase n-terminal deletion mutant
Total Genus 118
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
418
structure length
418
Chain Sequence
PESVRYIKKKMHGEKLRKVEIEAIVRDIVDRKLRDIEISSFVTALEINGLDMDEIAALTIAMAETGDMLDIDRKPIMDVHSIGGVPGNKTNILVVPIVAAAGLTIPKTSSRAITSAAGTADVVEVFADVSFSLDEIKRIVEKVGACLVWGGALNLAPADDITIKAERALSIDPTGLMLASIMSKKYAMGSQYVLIDIPTGKGVKVETVEEARSLARDFIELGKRLGQYVEVAITYGGQPIGHTVGPALEAREALSALMTGKGPGSLIEKATGLAGILLEMGGVAPAGTGKKMAKEILESGKAWEKMKEIIEAQGGDPNIKPEEIPIGDKTYTFTAATSGYVTAIDNRAITAIARAAGAPEDKGAGIELYVKVGEKVKEGDPLFTIHAEHEARLDQAIVLARRTEPIRIEGMVLQRIGN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Putative thymidine phosphorylase
publication title Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
pubmed doi rcsb
source organism Thermococcus kodakarensis
total genus 118
structure length 418
sequence length 418
chains with identical sequence B
ec nomenclature ec 2.4.2.57: AMP phosphorylase.
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 4ga4A01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 4ga4A02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 4ga4A03
4GTNA 4GKMA 2TPTA 1BRWA 4LHMA 4N8QA 4OWOA 4OWQA 4OWVA 4YI7A 1ZYKA 2WK5A 4IJ1A 4X5CA 1ZXYA 1ZVWA 4YEKA 4X58A 1KHDA 4YYYA 5EP8A 3H5QA 3TWPA 4GA6A 4ZOKA 3R6CA 5BO2A 5EY3A 1VQUA 1O17A 3GBRA 3QS8A 1V8GA 4X5BA 4ZTVA 5BO3A 4X5EA 4N5VA 5BYTA 4GA5A 2J0FA 4OWNA 4X5AA 5C1RA 4X5DA 2WK6A 4ZOFA 5BNEA 4ZOJA 3QSAA 1KGZA 2DSJA 4EAFA 1GXBA 4OWUA 4N93A 3R88A 4EADA 2GVQA 3QQSA 1AZYA 5C7SA 4X46A 4GIUA 4M0RA 4OWMA 4HKMA 4GA4A 3QR9A 4XR5A 2BPQA 1UOUA 4MUOA 4X59A 4OWSA 3UU1A 5C2LA 1OTPA 2ELCA
chains in the Genus database with same CATH superfamily
4GTNA 4GKMA 3NVVC 2TPTA 1SIJA 1VLBA 1VDVA 1NVIE 1BRWA 4LHMA 3AMZA 3SR6C 1WKIA 5GADN 4N8QA 2OTJH 4IOCJ 1KC8J 4OWOA 4US8A 3BIIE 4OWQA 5AYZA 2ZJPJ 2B7PA 4OWVA 4YI7A 1VQ4H 1YITH 1ZYKA 2WK5A 3B9JC 2W3RB 1Q7YJ 2ZJRJ 4IJ1A 4UY8M 1Q81J 1RM6A 1V97A 4X5CA 1DGJA 5H1SO 1QPRA 5AYYA 3WO0A 3CCLH 1ZXYA 1QAPA 1VQ7H 5HUPA 1VQOH 3I56H 1ZVWA 4YEKA 3CCMH 4X58A 1YTDA 1N60B 1KHDA 1FM0E 4YYYA 3C2VA 1QVFH 1FFUB 5EP8A 1SB3A 3CPWH 3CCEH 5HUOA 3CC4H 3FAHA 5GAGN 3H5QA 2Q5WE 3TWPA 4GA6A 3L4PA 5HL7J 3ETRC 3C2EA 5MPOC 1M90J 1VQ6H 1YTKA 4ZOKA 1WYGA 3CCSH 1YHQH 3R6CA 1M1KJ 3PAJA 5BO2A 5EY3A 4WFNJ 3CF5J 3G4SH 1VQUA 1VQLH 1YJ9H 5HULA 1O17A 3GBRA 3QS8A 3I55H 1K9MJ 1V8GA 4X5BA 3WO1A 2OTLH 5GAHN 4ZTVA 5JVHJ 1NJIJ 5BO3A 1Q82J 4X5EA 2JBMA 3OW2H 4AP8A 3NRZC 3NVZC 3CCRH 4N5VA 1N63B 2I1OA 5BYTA 3AM9A 4GA5A 2J0FA 3L0GA 4WFAJ 1VQ5H 1Y69K 1JRPB 5MLCO 4OWNA 5DM7J 4IO9J 1VQPH 4KWVA 4USAA 4X5AA 2W55B 5C1RA 1W2BH 4X5DA 2WK6A 4ZOFA 3EUB4 1JJ2H 3CMEH 5BNEA 4ZOJA 2B7QA 1VQMH 4IOAJ 3AN1A 2E3TA 1RF8B 5AYXA 2QIEA 3J7ZM 3CXCH 3C2OA 3QSAA 4WFBJ 1KGZA 3CC2H 4ZOHA 3CCJH 4F3FC 2DSJA 3G71H 4U67J 4EAFA 3CCUH 2I14A 3CC7H 3DLLJ 1GXBA 1N5WB 4OWUA 1RRZA 4N93A 3R88A 1N61B 2WP4A 1FMAE 5GAEN 1N5XA 1K8AJ 1QPNA 4EADA 4WCEJ 2GVQA 2QEXH 1YJWH 3QQSA 1Q86J 1AZYA 1X1OA 3FC4A 1NVJA 3CMAH 1KD1J 5DM6J 4US9A 2PA2A 5C7SA 4X46A 3NVWC 4GIUA 1QPOA 1ZXIB 4WF9J 4M0RA 4OWMA 2OMDA 3NS1C 1YJNH 4C80A 4HKMA 1KQSH 1QPQA 5JVGJ 4GA4A 3CCQH 3QR9A 1VQ9H 3NVYC 4XR5A 1YTEA 2W3SB 5AN9F 3PIOJ 2BPQA 1UOUA 1VQKH 1FFVB 3RPFA 4C7YA 3VMMA 1VQ8H 3CCVH 2B7NA 4I9AA 1K73J 1QVGH 4MUOA 1VQNH 4X59A 1YI2H 4OWSA 2QA4H 3TQVA 1FO4A 1N62B 1N8RJ 3UU1A 1JROB 2W54B 3CD6H 5C2LA 3C2FA 3WNZA 1OTPA 4KWWA 1O4UA 3C2RA 4C7ZA 1S72H 3G6EH 2ZJQJ 3PIPJ 1YIJH 3GNNA 1FIQC 2ELCA
chains in the Genus database with same CATH topology
4GTNA 4GKMA 2TPTA 1BRWA 4LHMA 4N8QA 4OWOA 4OWQA 4OWVA 4YI7A 1ZYKA 2WK5A 4IJ1A 4X5CA 1ZXYA 1ZVWA 4YEKA 4X58A 1KHDA 4YYYA 5EP8A 3H5QA 3TWPA 4GA6A 4ZOKA 3R6CA 5BO2A 5EY3A 1VQUA 1O17A 3GBRA 3QS8A 1V8GA 4X5BA 4ZTVA 5BO3A 4X5EA 4N5VA 5BYTA 4GA5A 2J0FA 4OWNA 4X5AA 5C1RA 4X5DA 2WK6A 4ZOFA 5BNEA 4ZOJA 3QSAA 1KGZA 2DSJA 4EAFA 1GXBA 4OWUA 4N93A 3R88A 4EADA 2GVQA 3QQSA 1AZYA 5C7SA 4X46A 4GIUA 4M0RA 4OWMA 4HKMA 4GA4A 3QR9A 4XR5A 2BPQA 1UOUA 4MUOA 4X59A 4OWSA 3UU1A 5C2LA 1OTPA 2ELCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GTN A;  4GKM A;  2TPT A;  1BRW A;  4LHM A;  4N8Q A;  4OWO A;  4OWQ A;  4OWV A;  4YI7 A;  1ZYK A;  2WK5 A;  4IJ1 A;  4X5C A;  1ZXY A;  1ZVW A;  4YEK A;  4X58 A;  1KHD A;  4YYY A;  5EP8 A;  3H5Q A;  3TWP A;  4GA6 A;  4ZOK A;  3R6C A;  5BO2 A;  5EY3 A;  1VQU A;  1O17 A;  3GBR A;  3QS8 A;  1V8G A;  4X5B A;  4ZTV A;  5BO3 A;  4X5E A;  4N5V A;  5BYT A;  4GA5 A;  2J0F A;  4OWN A;  4X5A A;  5C1R A;  4X5D A;  2WK6 A;  4ZOF A;  5BNE A;  4ZOJ A;  3QSA A;  1KGZ A;  2DSJ A;  4EAF A;  1GXB A;  4OWU A;  4N93 A;  3R88 A;  4EAD A;  2GVQ A;  3QQS A;  1AZY A;  5C7S A;  4X46 A;  4GIU A;  4M0R A;  4OWM A;  4HKM A;  4GA4 A;  3QR9 A;  4XR5 A;  2BPQ A;  1UOU A;  4MUO A;  4X59 A;  4OWS A;  3UU1 A;  5C2L A;  1OTP A;  2ELC A; 
#chains in the Genus database with same CATH topology
 4GTN A;  4GKM A;  3NVV C;  2TPT A;  1SIJ A;  1VLB A;  1VDV A;  1NVI E;  1BRW A;  4LHM A;  3AMZ A;  3SR6 C;  1WKI A;  5GAD N;  4N8Q A;  2OTJ H;  4IOC J;  1KC8 J;  4OWO A;  4US8 A;  3BII E;  4OWQ A;  5AYZ A;  2ZJP J;  2B7P A;  4OWV A;  4YI7 A;  1VQ4 H;  1YIT H;  1ZYK A;  2WK5 A;  3B9J C;  2W3R B;  1Q7Y J;  2ZJR J;  4IJ1 A;  4UY8 M;  1Q81 J;  1RM6 A;  1V97 A;  4X5C A;  1DGJ A;  5H1S O;  1QPR A;  5AYY A;  3WO0 A;  3CCL H;  1ZXY A;  1QAP A;  1VQ7 H;  5HUP A;  1VQO H;  3I56 H;  1ZVW A;  4YEK A;  3CCM H;  4X58 A;  1YTD A;  1N60 B;  1KHD A;  1FM0 E;  4YYY A;  3C2V A;  1QVF H;  1FFU B;  5EP8 A;  1SB3 A;  3CPW H;  3CCE H;  5HUO A;  3CC4 H;  3FAH A;  5GAG N;  3H5Q A;  2Q5W E;  3TWP A;  4GA6 A;  3L4P A;  5HL7 J;  3ETR C;  3C2E A;  5MPO C;  1M90 J;  1VQ6 H;  1YTK A;  4ZOK A;  1WYG A;  3CCS H;  1YHQ H;  3R6C A;  1M1K J;  3PAJ A;  5BO2 A;  5EY3 A;  4WFN J;  3CF5 J;  3G4S H;  1VQU A;  1VQL H;  1YJ9 H;  5HUL A;  1O17 A;  3GBR A;  3QS8 A;  3I55 H;  1K9M J;  1V8G A;  4X5B A;  3WO1 A;  2OTL H;  5GAH N;  4ZTV A;  5JVH J;  1NJI J;  5BO3 A;  1Q82 J;  4X5E A;  2JBM A;  3OW2 H;  4AP8 A;  3NRZ C;  3NVZ C;  3CCR H;  4N5V A;  1N63 B;  2I1O A;  5BYT A;  3AM9 A;  4GA5 A;  2J0F A;  3L0G A;  4WFA J;  1VQ5 H;  1Y69 K;  1JRP B;  5MLC O;  4OWN A;  5DM7 J;  4IO9 J;  1VQP H;  4KWV A;  4USA A;  4X5A A;  2W55 B;  5C1R A;  1W2B H;  4X5D A;  2WK6 A;  4ZOF A;  3EUB 4;  1JJ2 H;  3CME H;  5BNE A;  4ZOJ A;  2B7Q A;  1VQM H;  4IOA J;  3AN1 A;  2E3T A;  1RF8 B;  5AYX A;  2QIE A;  3J7Z M;  3CXC H;  3C2O A;  3QSA A;  4WFB J;  1KGZ A;  3CC2 H;  4ZOH A;  3CCJ H;  4F3F C;  2DSJ A;  3G71 H;  4U67 J;  4EAF A;  3CCU H;  2I14 A;  3CC7 H;  3DLL J;  1GXB A;  1N5W B;  4OWU A;  1RRZ A;  4N93 A;  3R88 A;  1N61 B;  2WP4 A;  1FMA E;  5GAE N;  1N5X A;  1K8A J;  1QPN A;  4EAD A;  4WCE J;  2GVQ A;  2QEX H;  1YJW H;  3QQS A;  1Q86 J;  1AZY A;  1X1O A;  3FC4 A;  1NVJ A;  3CMA H;  1KD1 J;  5DM6 J;  4US9 A;  2PA2 A;  5C7S A;  4X46 A;  3NVW C;  4GIU A;  1QPO A;  1ZXI B;  4WF9 J;  4M0R A;  4OWM A;  2OMD A;  3NS1 C;  1YJN H;  4C80 A;  4HKM A;  1KQS H;  1QPQ A;  5JVG J;  4GA4 A;  3CCQ H;  3QR9 A;  1VQ9 H;  3NVY C;  4XR5 A;  1YTE A;  2W3S B;  5AN9 F;  3PIO J;  2BPQ A;  1UOU A;  1VQK H;  1FFV B;  3RPF A;  4C7Y A;  3VMM A;  1VQ8 H;  3CCV H;  2B7N A;  4I9A A;  1K73 J;  1QVG H;  4MUO A;  1VQN H;  4X59 A;  1YI2 H;  4OWS A;  2QA4 H;  3TQV A;  1FO4 A;  1N62 B;  1N8R J;  3UU1 A;  1JRO B;  2W54 B;  3CD6 H;  5C2L A;  3C2F A;  3WNZ A;  1OTP A;  4KWW A;  1O4U A;  3C2R A;  4C7Z A;  1S72 H;  3G6E H;  2ZJQ J;  3PIP J;  1YIJ H;  3GNN A;  1FIQ C;  2ELC A; 
#chains in the Genus database with same CATH homology
 4GTN A;  4GKM A;  2TPT A;  1BRW A;  4LHM A;  4N8Q A;  4OWO A;  4OWQ A;  4OWV A;  4YI7 A;  1ZYK A;  2WK5 A;  4IJ1 A;  4X5C A;  1ZXY A;  1ZVW A;  4YEK A;  4X58 A;  1KHD A;  4YYY A;  5EP8 A;  3H5Q A;  3TWP A;  4GA6 A;  4ZOK A;  3R6C A;  5BO2 A;  5EY3 A;  1VQU A;  1O17 A;  3GBR A;  3QS8 A;  1V8G A;  4X5B A;  4ZTV A;  5BO3 A;  4X5E A;  4N5V A;  5BYT A;  4GA5 A;  2J0F A;  4OWN A;  4X5A A;  5C1R A;  4X5D A;  2WK6 A;  4ZOF A;  5BNE A;  4ZOJ A;  3QSA A;  1KGZ A;  2DSJ A;  4EAF A;  1GXB A;  4OWU A;  4N93 A;  3R88 A;  4EAD A;  2GVQ A;  3QQS A;  1AZY A;  5C7S A;  4X46 A;  4GIU A;  4M0R A;  4OWM A;  4HKM A;  4GA4 A;  3QR9 A;  4XR5 A;  2BPQ A;  1UOU A;  4MUO A;  4X59 A;  4OWS A;  3UU1 A;  5C2L A;  1OTP A;  2ELC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...