4GAMC

Complex structure of methane monooxygenase hydroxylase and regulatory subunit
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Methane monooxygenase component A beta chain
publication title Control of substrate access to the active site in methane monooxygenase.
pubmed doi rcsb
source organism Methylococcus capsulatus
total genus 56
structure length 166
sequence length 166
chains with identical sequence H, M, R
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 4gamC01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 4gamC02
1XVBE 1FZ1E 1FZ4E 1FZ5E 1XU5E 1FZ8E 1XMHE 1XVFE 1FZ0E 1XVCE 1FZ6E 1FYZE 1XVGE 1MTYG 1FZHE 1XMFE 1FZ2E 1MMOG 4GAMC 1XU3E 1FZIE 1FZ7E 1XMGE 1FZ9E 1FZ3E 1MHYG 1XVEE 1MHZG 1XVDE
chains in the Genus database with same CATH superfamily
4RG8A 1CLQA 1FZ1E 3SI6A 4DU3A 4FJMA 4FK0A 3QNNA 3TAGA 4ICGC 3CFRA 4DTRA 3SCXA 4IT5A 3TAFA 3HGKE 4DU1A 5IZ7A 2B7MA 4DTMA 4X5NA 3SQ4A 4FJIA 3K2OA 4FJGA 4J2DA 3TABA 4FK2A 4KHYA 2OVRB 4J2EA 1FZ6E 2DEBA 3LD8A 3N1BA 2VJ5A 3NAEA 2OZSA 4DTNA 2P1PB 2P1MB 3QEWA 1NEXB 4EYWA 4EP9A 3QEIA 2P5GA 1XU3E 4JRPA 3HP9A 3TL8B 3QESA 3CFOA 1XMGE 4M3RA 4AKHA 1FZ3E 1FPOA 3SNNA 3J27A 3KD5E 3C6PB 4I9LA 2P1NB 3SQ2A 4FJLA 1P22A 4M3WA 4M3UA 2JHPA 2FW3A 2OVPB 3LZIA 3NHGA 1FZ4E 4JS4A 3OGKB 3NCIA 2B1EA 1FZ0E 1WAJA 3TAEA 3RMDA 4KHUA 2B8IA 4FJNA 3QEPA 4M3XA 2JH8A 3QERA 2OYQA 2DY4A 4E4BA 3HL8A 4FVMA 4JS5A 1Q9YA 4KI4A 1XVGE 1MTYG 2E32A 3CQ8A 4EPHA 4DTOA 4DTJA 3QNOA 3NGIA 2DTUA 3SUPA 1FZ7E 3E4WA 4DTUA 3KD1E 1WAFA 4QNDA 4JRQA 3SPZA 3LDSA 2OZMA 3LZJA 3RMBA 4FK4A 1XVDE 2OVQB 3UO2A 2LF6A 4FJ8A 3QEVA 4KI6A 3N1EA 4FJHA 5IREA 1FZ5E 1XU5E 2JPNA 3SVIA 4FJXA 3RMCA 1XMHE 1XVFE 1XL3C 2PFVA 1LDKE 2YB5A 4DTPA 4M42A 3BVOA 3L8BA 3SPYA 4ADNA 3SJJA 2P1OB 3SUQA 1XVCE 3SUOA 4KHWA 1FYZE 3C6NB 4DTXA 4ADOA 3QEXA 4FJ5A 4HCBA 3WSOA 5IBKB 1FZHE 3J2PA 3NE6A 1XMFE 1FZ2E 2JHCA 2H4TA 3QETA 3L2OB 4I6JB 3SQ0A 4FJJA 1FS1A 3OGMB 3C95A 4FJ7A 2E31A 2FYOA 4RL5A 2MW2A 2K5SA 3V7DB 4M45A 3RMAA 4DU4A 4RNGA 5H37A 4KHNA 3C94A 2RCUA 1MHZG 3SUNA 4FJ9A 4AI6A 2P1QB 1XVBE 4M41A 3SQ1A 3HGLA 4FJKA 4KHSA 1JW2A 4AKIA 3LDBA 1FXXA 3S9HA 4QNCA 1FZ8E 3OGLB 2MZWB 1N1CA 2QXFA 3C6OB 2P5OA 2MMBA 2JHAA 2VJ4A 1IG9A 4J2BA 4M3YA 3L1NA 4AKGA 2PFTA 4J2AA 4M3ZA 1MMOG 4GAMC 4M3TA 4X5MA 2LF3A 3TJYA 4DTSA 3L0MA 4E3SA 1FZIE 2VIXA 4B08A 3RWUA 2RKHA 1FZ9E 4HCCA 2ATQA 3CFPA 3MKSB 3UO3A 2JH9A 1IH7A 3NDKA 3E4YA 2HD0A 1Q9XA 1MHYG 3UIQA 1XVEE 4I9QA 4KHQA 2JQTA
chains in the Genus database with same CATH topology
4RG8A 1CLQA 1FZ1E 3SI6A 4DU3A 4FJMA 4FK0A 3QNNA 3TAGA 3SCXA 3CFRA 4DTRA 3TAFA 3HGKE 4DU1A 5IZ7A 2B7MA 4DTMA 4X5NA 3SQ4A 4FJIA 3K2OA 4FJGA 4J2DA 3TABA 4FK2A 4KHYA 2OVRB 4J2EA 1FZ6E 2DEBA 3LD8A 3N1BA 2VJ5A 3NAEA 2OZSA 4DTNA 2P1PB 2P1MB 3QEWA 1NEXB 4EYWA 4EP9A 3QEIA 2P5GA 1XU3E 4JRPA 3HP9A 3TL8B 3QESA 3CFOA 1XMGE 4M3RA 4AKHA 1FZ3E 3SNNA 3J27A 3KD5E 3C6PB 4I9LA 2P1NB 3SQ2A 4FJLA 1P22A 4M3WA 4M3UA 2JHPA 2FW3A 2OVPB 3LZIA 3NHGA 1FZ4E 4JS4A 3OGKB 3NCIA 2B1EA 1FZ0E 1WAJA 3TAEA 3RMDA 4KHUA 2B8IA 4FJNA 3QEPA 4M3XA 2JH8A 3QERA 2OYQA 2DY4A 4E4BA 3HL8A 4FVMA 4JS5A 1Q9YA 4KI4A 1XVGE 1MTYG 2E32A 3CQ8A 4EPHA 4DTOA 4DTJA 3QNOA 3NGIA 2DTUA 3SUPA 1FZ7E 3E4WA 4DTUA 3KD1E 1WAFA 4QNDA 4JRQA 3SPZA 3LDSA 2OZMA 3LZJA 3RMBA 4FK4A 1XVDE 2OVQB 2LF6A 4FJ8A 3QEVA 4KI6A 3N1EA 4FJHA 5IREA 1FZ5E 1XU5E 2JPNA 3SVIA 4FJXA 3RMCA 1XMHE 1XVFE 1XL3C 2YB5A 1LDKE 2PFVA 4DTPA 4M42A 3L8BA 3SPYA 4ADNA 3SJJA 2P1OB 3SUQA 1XVCE 3SUOA 4KHWA 1FYZE 3C6NB 4DTXA 4ADOA 3QEXA 4FJ5A 4HCBA 3WSOA 5IBKB 1FZHE 3J2PA 3NE6A 1XMFE 1FZ2E 2JHCA 2H4TA 3QETA 3L2OB 4I6JB 3SQ0A 4FJJA 1FS1A 3OGMB 3C95A 4FJ7A 2E31A 2FYOA 4RL5A 3V7DB 4M45A 3RMAA 4DU4A 4RNGA 5H37A 4KHNA 3C94A 2RCUA 1MHZG 3SUNA 4FJ9A 4AI6A 2P1QB 1XVBE 4M41A 3SQ1A 3HGLA 4FJKA 4KHSA 4AKIA 3LDBA 1FXXA 3S9HA 4QNCA 1FZ8E 3OGLB 2MZWB 4J2BA 2QXFA 3C6OB 2P5OA 2MMBA 2JHAA 2VJ4A 1IG9A 4M3YA 3L1NA 4AKGA 2PFTA 4J2AA 4M3ZA 1MMOG 4GAMC 4M3TA 4X5MA 2LF3A 3TJYA 4DTSA 3L0MA 4E3SA 1FZIE 2VIXA 4B08A 3RWUA 1FZ9E 4HCCA 2ATQA 3CFPA 3MKSB 2JH9A 1IH7A 3NDKA 3E4YA 2HD0A 1Q9XA 1MHYG 3UIQA 1XVEE 4I9QA 4KHQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XVB E;  1FZ1 E;  1FZ4 E;  1FZ5 E;  1XU5 E;  1FZ8 E;  1XMH E;  1XVF E;  1FZ0 E;  1XVC E;  1FZ6 E;  1FYZ E;  1XVG E;  1MTY G;  1FZH E;  1XMF E;  1FZ2 E;  1MMO G;  4GAM C;  1XU3 E;  1FZI E;  1FZ7 E;  1XMG E;  1FZ9 E;  1FZ3 E;  1MHY G;  1XVE E;  1MHZ G;  1XVD E; 
#chains in the Genus database with same CATH topology
 4RG8 A;  1CLQ A;  1FZ1 E;  3SI6 A;  4DU3 A;  4FJM A;  4FK0 A;  3QNN A;  3TAG A;  4ICG C;  3CFR A;  4DTR A;  3SCX A;  4IT5 A;  3TAF A;  3HGK E;  4DU1 A;  5IZ7 A;  2B7M A;  4DTM A;  4X5N A;  3SQ4 A;  4FJI A;  3K2O A;  4FJG A;  4J2D A;  3TAB A;  4FK2 A;  4KHY A;  2OVR B;  4J2E A;  1FZ6 E;  2DEB A;  3LD8 A;  3N1B A;  2VJ5 A;  3NAE A;  2OZS A;  4DTN A;  2P1P B;  2P1M B;  3QEW A;  1NEX B;  4EYW A;  4EP9 A;  3QEI A;  2P5G A;  1XU3 E;  4JRP A;  3HP9 A;  3TL8 B;  3QES A;  3CFO A;  1XMG E;  4M3R A;  4AKH A;  1FZ3 E;  1FPO A;  3SNN A;  3J27 A;  3KD5 E;  3C6P B;  4I9L A;  2P1N B;  3SQ2 A;  4FJL A;  1P22 A;  4M3W A;  4M3U A;  2JHP A;  2FW3 A;  2OVP B;  3LZI A;  3NHG A;  1FZ4 E;  4JS4 A;  3OGK B;  3NCI A;  2B1E A;  1FZ0 E;  1WAJ A;  3TAE A;  3RMD A;  4KHU A;  2B8I A;  4FJN A;  3QEP A;  4M3X A;  2JH8 A;  3QER A;  2OYQ A;  2DY4 A;  4E4B A;  3HL8 A;  4FVM A;  4JS5 A;  1Q9Y A;  4KI4 A;  1XVG E;  1MTY G;  2E32 A;  3CQ8 A;  4EPH A;  4DTO A;  4DTJ A;  3QNO A;  3NGI A;  2DTU A;  3SUP A;  1FZ7 E;  3E4W A;  4DTU A;  3KD1 E;  1WAF A;  4QND A;  4JRQ A;  3SPZ A;  3LDS A;  2OZM A;  3LZJ A;  3RMB A;  4FK4 A;  1XVD E;  2OVQ B;  3UO2 A;  2LF6 A;  4FJ8 A;  3QEV A;  4KI6 A;  3N1E A;  4FJH A;  5IRE A;  1FZ5 E;  1XU5 E;  2JPN A;  3SVI A;  4FJX A;  3RMC A;  1XMH E;  1XVF E;  1XL3 C;  2PFV A;  1LDK E;  2YB5 A;  4DTP A;  4M42 A;  3BVO A;  3L8B A;  3SPY A;  4ADN A;  3SJJ A;  2P1O B;  3SUQ A;  1XVC E;  3SUO A;  4KHW A;  1FYZ E;  3C6N B;  4DTX A;  4ADO A;  3QEX A;  4FJ5 A;  4HCB A;  3WSO A;  5IBK B;  1FZH E;  3J2P A;  3NE6 A;  1XMF E;  1FZ2 E;  2JHC A;  2H4T A;  3QET A;  3L2O B;  4I6J B;  3SQ0 A;  4FJJ A;  1FS1 A;  3OGM B;  3C95 A;  4FJ7 A;  2E31 A;  2FYO A;  4RL5 A;  2MW2 A;  2K5S A;  3V7D B;  4M45 A;  3RMA A;  4DU4 A;  4RNG A;  5H37 A;  4KHN A;  3C94 A;  2RCU A;  1MHZ G;  3SUN A;  4FJ9 A;  4AI6 A;  2P1Q B;  1XVB E;  4M41 A;  3SQ1 A;  3HGL A;  4FJK A;  4KHS A;  1JW2 A;  4AKI A;  3LDB A;  1FXX A;  3S9H A;  4QNC A;  1FZ8 E;  3OGL B;  2MZW B;  1N1C A;  2QXF A;  3C6O B;  2P5O A;  2MMB A;  2JHA A;  2VJ4 A;  1IG9 A;  4J2B A;  4M3Y A;  3L1N A;  4AKG A;  2PFT A;  4J2A A;  4M3Z A;  1MMO G;  4GAM C;  4M3T A;  4X5M A;  2LF3 A;  3TJY A;  4DTS A;  3L0M A;  4E3S A;  1FZI E;  2VIX A;  4B08 A;  3RWU A;  2RKH A;  1FZ9 E;  4HCC A;  2ATQ A;  3CFP A;  3MKS B;  3UO3 A;  2JH9 A;  1IH7 A;  3NDK A;  3E4Y A;  2HD0 A;  1Q9X A;  1MHY G;  3UIQ A;  1XVE E;  4I9Q A;  4KHQ A;  2JQT A; 
#chains in the Genus database with same CATH homology
 4RG8 A;  1CLQ A;  1FZ1 E;  3SI6 A;  4DU3 A;  4FJM A;  4FK0 A;  3QNN A;  3TAG A;  3SCX A;  3CFR A;  4DTR A;  3TAF A;  3HGK E;  4DU1 A;  5IZ7 A;  2B7M A;  4DTM A;  4X5N A;  3SQ4 A;  4FJI A;  3K2O A;  4FJG A;  4J2D A;  3TAB A;  4FK2 A;  4KHY A;  2OVR B;  4J2E A;  1FZ6 E;  2DEB A;  3LD8 A;  3N1B A;  2VJ5 A;  3NAE A;  2OZS A;  4DTN A;  2P1P B;  2P1M B;  3QEW A;  1NEX B;  4EYW A;  4EP9 A;  3QEI A;  2P5G A;  1XU3 E;  4JRP A;  3HP9 A;  3TL8 B;  3QES A;  3CFO A;  1XMG E;  4M3R A;  4AKH A;  1FZ3 E;  3SNN A;  3J27 A;  3KD5 E;  3C6P B;  4I9L A;  2P1N B;  3SQ2 A;  4FJL A;  1P22 A;  4M3W A;  4M3U A;  2JHP A;  2FW3 A;  2OVP B;  3LZI A;  3NHG A;  1FZ4 E;  4JS4 A;  3OGK B;  3NCI A;  2B1E A;  1FZ0 E;  1WAJ A;  3TAE A;  3RMD A;  4KHU A;  2B8I A;  4FJN A;  3QEP A;  4M3X A;  2JH8 A;  3QER A;  2OYQ A;  2DY4 A;  4E4B A;  3HL8 A;  4FVM A;  4JS5 A;  1Q9Y A;  4KI4 A;  1XVG E;  1MTY G;  2E32 A;  3CQ8 A;  4EPH A;  4DTO A;  4DTJ A;  3QNO A;  3NGI A;  2DTU A;  3SUP A;  1FZ7 E;  3E4W A;  4DTU A;  3KD1 E;  1WAF A;  4QND A;  4JRQ A;  3SPZ A;  3LDS A;  2OZM A;  3LZJ A;  3RMB A;  4FK4 A;  1XVD E;  2OVQ B;  2LF6 A;  4FJ8 A;  3QEV A;  4KI6 A;  3N1E A;  4FJH A;  5IRE A;  1FZ5 E;  1XU5 E;  2JPN A;  3SVI A;  4FJX A;  3RMC A;  1XMH E;  1XVF E;  1XL3 C;  2YB5 A;  1LDK E;  2PFV A;  4DTP A;  4M42 A;  3L8B A;  3SPY A;  4ADN A;  3SJJ A;  2P1O B;  3SUQ A;  1XVC E;  3SUO A;  4KHW A;  1FYZ E;  3C6N B;  4DTX A;  4ADO A;  3QEX A;  4FJ5 A;  4HCB A;  3WSO A;  5IBK B;  1FZH E;  3J2P A;  3NE6 A;  1XMF E;  1FZ2 E;  2JHC A;  2H4T A;  3QET A;  3L2O B;  4I6J B;  3SQ0 A;  4FJJ A;  1FS1 A;  3OGM B;  3C95 A;  4FJ7 A;  2E31 A;  2FYO A;  4RL5 A;  3V7D B;  4M45 A;  3RMA A;  4DU4 A;  4RNG A;  5H37 A;  4KHN A;  3C94 A;  2RCU A;  1MHZ G;  3SUN A;  4FJ9 A;  4AI6 A;  2P1Q B;  1XVB E;  4M41 A;  3SQ1 A;  3HGL A;  4FJK A;  4KHS A;  4AKI A;  3LDB A;  1FXX A;  3S9H A;  4QNC A;  1FZ8 E;  3OGL B;  2MZW B;  4J2B A;  2QXF A;  3C6O B;  2P5O A;  2MMB A;  2JHA A;  2VJ4 A;  1IG9 A;  4M3Y A;  3L1N A;  4AKG A;  2PFT A;  4J2A A;  4M3Z A;  1MMO G;  4GAM C;  4M3T A;  4X5M A;  2LF3 A;  3TJY A;  4DTS A;  3L0M A;  4E3S A;  1FZI E;  2VIX A;  4B08 A;  3RWU A;  1FZ9 E;  4HCC A;  2ATQ A;  3CFP A;  3MKS B;  2JH9 A;  1IH7 A;  3NDK A;  3E4Y A;  2HD0 A;  1Q9X A;  1MHY G;  3UIQ A;  1XVE E;  4I9Q A;  4KHQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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