4GB34

Human coxsackievirus b3 strain rd coat protein
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
55
Chain Sequence
b'GAQVSTQKTGIHYTNINYYKDAASNSANRQDFTQDPGKFTEPVKDIMIKSLPALN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of a Coxsackievirus B3-RD Variant and a Refined 9-Angstrom Cryo-Electron Microscopy Reconstruction of the Virus Complexed with Decay-Accelerating Factor (DAF) Provide a New Footprint of DAF on the Virus Surface.
pubmed doi rcsb
molecule keywords coat protein 1
molecule tags Virus
total genus 4
structure length 55
sequence length 68
ec nomenclature
pdb deposition date 2012-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 4gb3400
1EAH4 1HRI4 1K5MD 1OOPD 2RS34 3JBG4 1VRH4 1PVC4 2RMU4 4Q4W4 3JD74 1VBA4 4PDWD 2PLV4 1ASJ4 1RUG4 1RUE4 1RVF4 1RUC4 2HWB4 4Q4V4 1PO14 1VBC4 1PO24 2R044 3J8F4 4Q4X4 1R084 1PIV4 1NA1D 1RMU4 1RUD4 2RM24 1HXS4 2X5ID 1D4M4 1RUJ4 1RUH4 1POV0 1AR74 1VBE4 1VBD4 1RHI4 2RS14 1VBB4 1NCQD 4Q4Y4 4GB34 2R064 2RR14 2HWC4 1AR84 1RUI4 1AR64 1R094 2R074 1MQTD 4RHV4 2RS54 1HRV4 1COV4 1EV14 1H8TD 1RUF4 1Z7S4 1AL24 1AR94 1BEV4
chains in the Genus database with same CATH superfamily
1ZP0A 3JBG4 1PVC4 2RMU4 1RUG4 2WS3A 2EX3A 1RUC4 4Q4X4 1RUD4 2PY5A 2RM24 2WQYA 1D4M4 3AE8A 2B76A 1POV0 1AR74 1KFYA 2H89A 3AE6A 2WP9A 4Q4Y4 3VR9A 2R064 2RR14 2HWC4 5C3JA 1AR64 3AEEA 2R074 2WDRA 1COV4 1BEV4 1EAH4 3SFDA 1XI1A 1YQ3A 4YSZA 1HRI4 3VRAA 3CIRA 4Q4W4 1VBA4 4PDWD 3AECA 1RVF4 4Q4V4 1VBC4 1PO24 3AE5A 1RMU4 3AEFA 4YTPA 1RUJ4 3GQHA 1VBE4 3SUCA 2H88A 1RHI4 1XHZA 3AE1A 3P4RA 3AE3A 3P4QA 4RHV4 2RS54 3AE2A 1EV14 1H8TD 1RUF4 1Z7S4 4YSYA 2PYLA 1AL24 3AEDA 1K5MD 1OOPD 2PW9A 2RS34 2PYJA 1VRH4 3JD74 1L0VA 2PLV4 1ASJ4 2HWB4 1PO14 3J8F4 1R084 2FBWA 1NA1D 1HXS4 2X5ID 4YTNA 1VBD4 3SFEA 4YTMA 2RS14 1VBB4 3ABVA 4GB34 1KF6A 1NEKA 3AEBA 1ZOYA 4KX6A 1MQTD 4YT0A 2WU5A 3FI7A 3VRBA 3AE9A 3AEGA 3P4SA 3AEAA 4YXDA 5C2TA 2WDQA 2R7FA 1RUE4 3AE4A 3AE7A 3VR8A 1YQ4A 4YSXA 2R044 1XHXA 1PIV4 1RUH4 2WDVA 3GQKA 1NCQD 1NENA 3P4PA 2ACZA 1AR84 1RUI4 2WU2A 1R094 1HRV4 1AR94 2PZSA
chains in the Genus database with same CATH topology
1EAH4 1HRI4 1K5MD 1OOPD 2RS34 3JBG4 1VRH4 1PVC4 2RMU4 4Q4W4 3JD74 1VBA4 4PDWD 2PLV4 1ASJ4 1RUG4 1RUE4 1RVF4 1RUC4 2HWB4 4Q4V4 1PO14 1VBC4 1PO24 2R044 3J8F4 4Q4X4 1R084 1PIV4 1NA1D 1RMU4 1RUD4 2RM24 1HXS4 2X5ID 1D4M4 1RUJ4 1RUH4 1POV0 1AR74 1VBE4 1VBD4 1RHI4 2RS14 1VBB4 1NCQD 4Q4Y4 4GB34 2R064 2RR14 2HWC4 1AR84 1RUI4 1AR64 1R094 2R074 1MQTD 4RHV4 2RS54 1HRV4 1COV4 1EV14 1H8TD 1RUF4 1Z7S4 1AL24 1AR94 1BEV4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAH 4;  1HRI 4;  1K5M D;  1OOP D;  2RS3 4;  3JBG 4;  1VRH 4;  1PVC 4;  2RMU 4;  4Q4W 4;  3JD7 4;  1VBA 4;  4PDW D;  2PLV 4;  1ASJ 4;  1RUG 4;  1RUE 4;  1RVF 4;  1RUC 4;  2HWB 4;  4Q4V 4;  1PO1 4;  1VBC 4;  1PO2 4;  2R04 4;  3J8F 4;  4Q4X 4;  1R08 4;  1PIV 4;  1NA1 D;  1RMU 4;  1RUD 4;  2RM2 4;  1HXS 4;  2X5I D;  1D4M 4;  1RUJ 4;  1RUH 4;  1POV 0;  1AR7 4;  1VBE 4;  1VBD 4;  1RHI 4;  2RS1 4;  1VBB 4;  1NCQ D;  4Q4Y 4;  4GB3 4;  2R06 4;  2RR1 4;  2HWC 4;  1AR8 4;  1RUI 4;  1AR6 4;  1R09 4;  2R07 4;  1MQT D;  4RHV 4;  2RS5 4;  1HRV 4;  1COV 4;  1EV1 4;  1H8T D;  1RUF 4;  1Z7S 4;  1AL2 4;  1AR9 4;  1BEV 4; 
#chains in the Genus database with same CATH topology
 1ZP0 A;  3JBG 4;  1PVC 4;  2RMU 4;  1RUG 4;  2WS3 A;  2EX3 A;  1RUC 4;  4Q4X 4;  1RUD 4;  2PY5 A;  2RM2 4;  2WQY A;  1D4M 4;  3AE8 A;  2B76 A;  1POV 0;  1AR7 4;  1KFY A;  2H89 A;  3AE6 A;  2WP9 A;  4Q4Y 4;  3VR9 A;  2R06 4;  2RR1 4;  2HWC 4;  5C3J A;  1AR6 4;  3AEE A;  2R07 4;  2WDR A;  1COV 4;  1BEV 4;  1EAH 4;  3SFD A;  1XI1 A;  1YQ3 A;  4YSZ A;  1HRI 4;  3VRA A;  3CIR A;  4Q4W 4;  1VBA 4;  4PDW D;  3AEC A;  1RVF 4;  4Q4V 4;  1VBC 4;  1PO2 4;  3AE5 A;  1RMU 4;  3AEF A;  4YTP A;  1RUJ 4;  3GQH A;  1VBE 4;  3SUC A;  2H88 A;  1RHI 4;  1XHZ A;  3AE1 A;  3P4R A;  3AE3 A;  3P4Q A;  4RHV 4;  2RS5 4;  3AE2 A;  1EV1 4;  1H8T D;  1RUF 4;  1Z7S 4;  4YSY A;  2PYL A;  1AL2 4;  3AED A;  1K5M D;  1OOP D;  2PW9 A;  2RS3 4;  2PYJ A;  1VRH 4;  3JD7 4;  1L0V A;  2PLV 4;  1ASJ 4;  2HWB 4;  1PO1 4;  3J8F 4;  1R08 4;  2FBW A;  1NA1 D;  1HXS 4;  2X5I D;  4YTN A;  1VBD 4;  3SFE A;  4YTM A;  2RS1 4;  1VBB 4;  3ABV A;  4GB3 4;  1KF6 A;  1NEK A;  3AEB A;  1ZOY A;  4KX6 A;  1MQT D;  4YT0 A;  2WU5 A;  3FI7 A;  3VRB A;  3AE9 A;  3AEG A;  3P4S A;  3AEA A;  4YXD A;  5C2T A;  2WDQ A;  2R7F A;  1RUE 4;  3AE4 A;  3AE7 A;  3VR8 A;  1YQ4 A;  4YSX A;  2R04 4;  1XHX A;  1PIV 4;  1RUH 4;  2WDV A;  3GQK A;  1NCQ D;  1NEN A;  3P4P A;  2ACZ A;  1AR8 4;  1RUI 4;  2WU2 A;  1R09 4;  1HRV 4;  1AR9 4;  2PZS A; 
#chains in the Genus database with same CATH homology
 1EAH 4;  1HRI 4;  1K5M D;  1OOP D;  2RS3 4;  3JBG 4;  1VRH 4;  1PVC 4;  2RMU 4;  4Q4W 4;  3JD7 4;  1VBA 4;  4PDW D;  2PLV 4;  1ASJ 4;  1RUG 4;  1RUE 4;  1RVF 4;  1RUC 4;  2HWB 4;  4Q4V 4;  1PO1 4;  1VBC 4;  1PO2 4;  2R04 4;  3J8F 4;  4Q4X 4;  1R08 4;  1PIV 4;  1NA1 D;  1RMU 4;  1RUD 4;  2RM2 4;  1HXS 4;  2X5I D;  1D4M 4;  1RUJ 4;  1RUH 4;  1POV 0;  1AR7 4;  1VBE 4;  1VBD 4;  1RHI 4;  2RS1 4;  1VBB 4;  1NCQ D;  4Q4Y 4;  4GB3 4;  2R06 4;  2RR1 4;  2HWC 4;  1AR8 4;  1RUI 4;  1AR6 4;  1R09 4;  2R07 4;  1MQT D;  4RHV 4;  2RS5 4;  1HRV 4;  1COV 4;  1EV1 4;  1H8T D;  1RUF 4;  1Z7S 4;  1AL2 4;  1AR9 4;  1BEV 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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