4GB34

Human coxsackievirus b3 strain rd coat protein
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
55
Chain Sequence
GAQVSTQKTGIHYTNINYYKDAASNSANRQDFTQDPGKFTEPVKDIMIKSLPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
publication title The Crystal Structure of a Coxsackievirus B3-RD Variant and a Refined 9-Angstrom Cryo-Electron Microscopy Reconstruction of the Virus Complexed with Decay-Accelerating Factor (DAF) Provide a New Footprint of DAF on the Virus Surface.
pubmed doi rcsb
molecule keywords coat protein 1
total genus 4
structure length 55
sequence length 68
ec nomenclature
pdb deposition date 2012-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 4gb3400
1RUD4 4Q4W4 1RHI4 1AR64 1VBE4 2HWC4 4PDWD 1HRI4 4GB34 2R074 1AR84 1K5MD 1PO14 3JD74 4RHV4 4Q4X4 4Q4Y4 1ASJ4 1RUC4 1PO24 1HRV4 1D4M4 1RUG4 1RMU4 1RUJ4 1OOPD 1RUH4 1VBD4 1Z7S4 2R044 1POV0 1VBA4 1PVC4 1EV14 1NA1D 2R064 3JBG4 4Q4V4 3J8F4 1RVF4 1PIV4 2RMU4 1AL24 1RUI4 1AR74 1R094 1AR94 1HXS4 1RUF4 1VRH4 1VBB4 2HWB4 2RS34 2X5ID 1H8TD 1NCQD 1VBC4 1BEV4 2PLV4 1COV4 1MQTD 1R084 2RM24 1EAH4 2RR14 2RS54 1RUE4 2RS14
chains in the Genus database with same CATH superfamily
1RHI4 2HWC4 2WDRA 3AE7A 3VRAA 4YSXA 1PO14 3JD74 4RHV4 3SUCA 1ASJ4 2WS3A 1PO24 1HRV4 4YTPA 1RMU4 1PVC4 2H88A 3VRBA 1AR74 1R094 1YQ4A 3VR9A 4YTNA 1HXS4 2X5ID 1H8TD 1NCQD 5C2TA 1BEV4 1ZP0A 2RM24 1EAH4 3P4PA 3AEFA 1NEKA 3FI7A 2PYLA 1KF6A 4GB34 4YT0A 3GQKA 4YSZA 1K5MD 2PYJA 3P4RA 2FBWA 1RUC4 1RUH4 1Z7S4 3AE1A 2PY5A 1POV0 1RVF4 1XI1A 2WP9A 2WDQA 4YXDA 1AR94 2ACZA 2WQYA 3AE2A 1VBB4 2HWB4 2RS34 1VBC4 1R084 1NENA 2WU5A 3AE6A 2EX3A 1AR64 2WDVA 2PZSA 3AE8A 2PW9A 1XHXA 4Q4X4 3GQHA 3AE4A 1D4M4 1RUJ4 1VBD4 2R044 1OOPD 3P4QA 4YTMA 1KFYA 1VBA4 2B76A 3JBG4 4Q4V4 3SFEA 1YQ3A 3AEEA 4YSYA 1RUI4 1L0VA 3AEBA 3VR8A 1COV4 2R7FA 2RR14 1RUF4 1RUD4 4Q4W4 1XHZA 1VBE4 4PDWD 1HRI4 3AECA 2R074 1AR84 2H89A 3AE9A 3AEAA 4Q4Y4 1ZOYA 1RUG4 3AEDA 3CIRA 2WU2A 4KX6A 1EV14 1NA1D 2R064 3AE3A 3J8F4 1PIV4 2RMU4 3AE5A 5C3JA 1AL24 3ABVA 1VRH4 3P4SA 2PLV4 3AEGA 1MQTD 3SFDA 2RS54 1RUE4 2RS14
chains in the Genus database with same CATH topology
1RUD4 4Q4W4 1RHI4 1AR64 1VBE4 2HWC4 4PDWD 1HRI4 4GB34 2R074 1AR84 1K5MD 1PO14 3JD74 4RHV4 4Q4X4 4Q4Y4 1ASJ4 1RUC4 1PO24 1HRV4 1D4M4 1RUG4 1RMU4 1RUJ4 1OOPD 1RUH4 1VBD4 1Z7S4 2R044 1POV0 1VBA4 1PVC4 1EV14 1NA1D 2R064 3JBG4 4Q4V4 3J8F4 1RVF4 1PIV4 2RMU4 1AL24 1RUI4 1AR74 1R094 1AR94 1HXS4 1RUF4 1VRH4 1VBB4 2HWB4 2RS34 2X5ID 1H8TD 1NCQD 1VBC4 1BEV4 2PLV4 1COV4 1MQTD 1R084 2RM24 1EAH4 2RR14 2RS54 1RUE4 2RS14
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUD 4;  4Q4W 4;  1RHI 4;  1AR6 4;  1VBE 4;  2HWC 4;  4PDW D;  1HRI 4;  4GB3 4;  2R07 4;  1AR8 4;  1K5M D;  1PO1 4;  3JD7 4;  4RHV 4;  4Q4X 4;  4Q4Y 4;  1ASJ 4;  1RUC 4;  1PO2 4;  1HRV 4;  1D4M 4;  1RUG 4;  1RMU 4;  1RUJ 4;  1OOP D;  1RUH 4;  1VBD 4;  1Z7S 4;  2R04 4;  1POV 0;  1VBA 4;  1PVC 4;  1EV1 4;  1NA1 D;  2R06 4;  3JBG 4;  4Q4V 4;  3J8F 4;  1RVF 4;  1PIV 4;  2RMU 4;  1AL2 4;  1RUI 4;  1AR7 4;  1R09 4;  1AR9 4;  1HXS 4;  1RUF 4;  1VRH 4;  1VBB 4;  2HWB 4;  2RS3 4;  2X5I D;  1H8T D;  1NCQ D;  1VBC 4;  1BEV 4;  2PLV 4;  1COV 4;  1MQT D;  1R08 4;  2RM2 4;  1EAH 4;  2RR1 4;  2RS5 4;  1RUE 4;  2RS1 4; 
#chains in the Genus database with same CATH topology
 1RHI 4;  2HWC 4;  2WDR A;  3AE7 A;  3VRA A;  4YSX A;  1PO1 4;  3JD7 4;  4RHV 4;  3SUC A;  1ASJ 4;  2WS3 A;  1PO2 4;  1HRV 4;  4YTP A;  1RMU 4;  1PVC 4;  2H88 A;  3VRB A;  1AR7 4;  1R09 4;  1YQ4 A;  3VR9 A;  4YTN A;  1HXS 4;  2X5I D;  1H8T D;  1NCQ D;  5C2T A;  1BEV 4;  1ZP0 A;  2RM2 4;  1EAH 4;  3P4P A;  3AEF A;  1NEK A;  3FI7 A;  2PYL A;  1KF6 A;  4GB3 4;  4YT0 A;  3GQK A;  4YSZ A;  1K5M D;  2PYJ A;  3P4R A;  2FBW A;  1RUC 4;  1RUH 4;  1Z7S 4;  3AE1 A;  2PY5 A;  1POV 0;  1RVF 4;  1XI1 A;  2WP9 A;  2WDQ A;  4YXD A;  1AR9 4;  2ACZ A;  2WQY A;  3AE2 A;  1VBB 4;  2HWB 4;  2RS3 4;  1VBC 4;  1R08 4;  1NEN A;  2WU5 A;  3AE6 A;  2EX3 A;  1AR6 4;  2WDV A;  2PZS A;  3AE8 A;  2PW9 A;  1XHX A;  4Q4X 4;  3GQH A;  3AE4 A;  1D4M 4;  1RUJ 4;  1VBD 4;  2R04 4;  1OOP D;  3P4Q A;  4YTM A;  1KFY A;  1VBA 4;  2B76 A;  3JBG 4;  4Q4V 4;  3SFE A;  1YQ3 A;  3AEE A;  4YSY A;  1RUI 4;  1L0V A;  3AEB A;  3VR8 A;  1COV 4;  2R7F A;  2RR1 4;  1RUF 4;  1RUD 4;  4Q4W 4;  1XHZ A;  1VBE 4;  4PDW D;  1HRI 4;  3AEC A;  2R07 4;  1AR8 4;  2H89 A;  3AE9 A;  3AEA A;  4Q4Y 4;  1ZOY A;  1RUG 4;  3AED A;  3CIR A;  2WU2 A;  4KX6 A;  1EV1 4;  1NA1 D;  2R06 4;  3AE3 A;  3J8F 4;  1PIV 4;  2RMU 4;  3AE5 A;  5C3J A;  1AL2 4;  3ABV A;  1VRH 4;  3P4S A;  2PLV 4;  3AEG A;  1MQT D;  3SFD A;  2RS5 4;  1RUE 4;  2RS1 4; 
#chains in the Genus database with same CATH homology
 1RUD 4;  4Q4W 4;  1RHI 4;  1AR6 4;  1VBE 4;  2HWC 4;  4PDW D;  1HRI 4;  4GB3 4;  2R07 4;  1AR8 4;  1K5M D;  1PO1 4;  3JD7 4;  4RHV 4;  4Q4X 4;  4Q4Y 4;  1ASJ 4;  1RUC 4;  1PO2 4;  1HRV 4;  1D4M 4;  1RUG 4;  1RMU 4;  1RUJ 4;  1OOP D;  1RUH 4;  1VBD 4;  1Z7S 4;  2R04 4;  1POV 0;  1VBA 4;  1PVC 4;  1EV1 4;  1NA1 D;  2R06 4;  3JBG 4;  4Q4V 4;  3J8F 4;  1RVF 4;  1PIV 4;  2RMU 4;  1AL2 4;  1RUI 4;  1AR7 4;  1R09 4;  1AR9 4;  1HXS 4;  1RUF 4;  1VRH 4;  1VBB 4;  2HWB 4;  2RS3 4;  2X5I D;  1H8T D;  1NCQ D;  1VBC 4;  1BEV 4;  2PLV 4;  1COV 4;  1MQT D;  1R08 4;  2RM2 4;  1EAH 4;  2RR1 4;  2RS5 4;  1RUE 4;  2RS1 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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