4GB34

Human coxsackievirus b3 strain rd coat protein
Total Genus 4
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
55
Chain Sequence
GAQVSTQKTGIHYTNINYYKDAASNSANRQDFTQDPGKFTEPVKDIMIKSLPALN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Virus
molecule keywords coat protein 1
publication title The Crystal Structure of a Coxsackievirus B3-RD Variant and a Refined 9-Angstrom Cryo-Electron Microscopy Reconstruction of the Virus Complexed with Decay-Accelerating Factor (DAF) Provide a New Footprint of DAF on the Virus Surface.
pubmed doi rcsb
total genus 4
structure length 55
sequence length 68
ec nomenclature
pdb deposition date 2012-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 4gb3400
1AR94 1PVC4 1RUC4 2PLV4 2RR14 2X5ID 4RHV4 4GB34 1NA1D 1COV4 1OOPD 3JD74 1VBB4 1RMU4 1RUG4 1NCQD 1RUJ4 1R094 1RVF4 1D4M4 1BEV4 2HWB4 2RMU4 4Q4X4 1MQTD 1R084 1RUF4 1RUH4 1HRI4 1VBD4 2RS34 3JBG4 4Q4W4 1HRV4 1RHI4 1HXS4 1EV14 2RS54 1AR84 4PDWD 1K5MD 1PO24 3J8F4 1H8TD 1RUE4 1AR74 4Q4V4 1RUD4 1Z7S4 1VBA4 2HWC4 1ASJ4 1VRH4 2R074 1VBE4 1EAH4 2R044 1AL24 1PIV4 1PO14 2R064 2RM24 2RS14 1POV0 4Q4Y4 1AR64 1VBC4 1RUI4
chains in the Genus database with same CATH superfamily
2WU5A 3AE2A 1OOPD 3JD74 1VBB4 2WDVA 1RUJ4 1RVF4 4Q4X4 4YTNA 2RS34 1VBD4 3AEAA 1EV14 3GQKA 2WP9A 3AE5A 1RUE4 1AR74 4Q4V4 2PY5A 1RUD4 1Z7S4 1VRH4 1ZOYA 1VBE4 2R7FA 3P4RA 2R044 3P4SA 1AL24 3AE7A 1POV0 4YSXA 2PZSA 2ACZA 2RR14 4RHV4 1XHZA 3AEEA 1RUG4 3AE1A 4YSYA 2HWB4 1BEV4 3AEFA 1MQTD 1R084 1RUF4 1RUH4 1YQ4A 3AEGA 4YTPA 2H88A 1AR84 2WU2A 3SFEA 3AE3A 2PYJA 1XHXA 1PIV4 2R064 1AR64 1VBC4 3VR9A 1XI1A 2PLV4 2X5ID 4GB34 1NA1D 1COV4 1R094 2RMU4 4YTMA 3FI7A 3AEDA 3VR8A 4Q4W4 1RHI4 2PW9A 3CIRA 2B76A 3GQHA 1HXS4 3SFDA 1NEKA 4YT0A 1PO24 1H8TD 4KX6A 1ZP0A 1ASJ4 1YQ3A 3AE9A 2R074 3AE6A 1L0VA 3AEBA 1EAH4 2WS3A 2WDRA 1PO14 3AE4A 4Q4Y4 1RUI4 1AR94 1PVC4 1RUC4 1RMU4 1NCQD 3P4PA 1D4M4 3AECA 3SUCA 3JBG4 2PYLA 2EX3A 1HRI4 1HRV4 2WQYA 2WDQA 2FBWA 2RS54 5C3JA 1K5MD 1NENA 3J8F4 3VRBA 3ABVA 2HWC4 3VRAA 5C2TA 3AE8A 3P4QA 4YSZA 1KFYA 4YXDA 2RM24 1KF6A 2RS14 2H89A 4PDWD 1VBA4
chains in the Genus database with same CATH topology
1AR94 1PVC4 1RUC4 2PLV4 2RR14 2X5ID 4RHV4 4GB34 1NA1D 1COV4 1OOPD 3JD74 1VBB4 1RMU4 1RUG4 1NCQD 1RUJ4 1R094 1RVF4 1D4M4 1BEV4 2HWB4 2RMU4 4Q4X4 1MQTD 1R084 1RUF4 1RUH4 1HRI4 1VBD4 2RS34 3JBG4 4Q4W4 1HRV4 1RHI4 1HXS4 1EV14 2RS54 1AR84 4PDWD 1K5MD 1PO24 3J8F4 1H8TD 1RUE4 1AR74 4Q4V4 1RUD4 1Z7S4 1VBA4 2HWC4 1ASJ4 1VRH4 2R074 1VBE4 1EAH4 2R044 1AL24 1PIV4 1PO14 2R064 2RM24 2RS14 1POV0 4Q4Y4 1AR64 1VBC4 1RUI4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AR9 4;  1PVC 4;  1RUC 4;  2PLV 4;  2RR1 4;  2X5I D;  4RHV 4;  4GB3 4;  1NA1 D;  1COV 4;  1OOP D;  3JD7 4;  1VBB 4;  1RMU 4;  1RUG 4;  1NCQ D;  1RUJ 4;  1R09 4;  1RVF 4;  1D4M 4;  1BEV 4;  2HWB 4;  2RMU 4;  4Q4X 4;  1MQT D;  1R08 4;  1RUF 4;  1RUH 4;  1HRI 4;  1VBD 4;  2RS3 4;  3JBG 4;  4Q4W 4;  1HRV 4;  1RHI 4;  1HXS 4;  1EV1 4;  2RS5 4;  1AR8 4;  4PDW D;  1K5M D;  1PO2 4;  3J8F 4;  1H8T D;  1RUE 4;  1AR7 4;  4Q4V 4;  1RUD 4;  1Z7S 4;  1VBA 4;  2HWC 4;  1ASJ 4;  1VRH 4;  2R07 4;  1VBE 4;  1EAH 4;  2R04 4;  1AL2 4;  1PIV 4;  1PO1 4;  2R06 4;  2RM2 4;  2RS1 4;  1POV 0;  4Q4Y 4;  1AR6 4;  1VBC 4;  1RUI 4; 
#chains in the Genus database with same CATH topology
 2WU5 A;  3AE2 A;  1OOP D;  3JD7 4;  1VBB 4;  2WDV A;  1RUJ 4;  1RVF 4;  4Q4X 4;  4YTN A;  2RS3 4;  1VBD 4;  3AEA A;  1EV1 4;  3GQK A;  2WP9 A;  3AE5 A;  1RUE 4;  1AR7 4;  4Q4V 4;  2PY5 A;  1RUD 4;  1Z7S 4;  1VRH 4;  1ZOY A;  1VBE 4;  2R7F A;  3P4R A;  2R04 4;  3P4S A;  1AL2 4;  3AE7 A;  1POV 0;  4YSX A;  2PZS A;  2ACZ A;  2RR1 4;  4RHV 4;  1XHZ A;  3AEE A;  1RUG 4;  3AE1 A;  4YSY A;  2HWB 4;  1BEV 4;  3AEF A;  1MQT D;  1R08 4;  1RUF 4;  1RUH 4;  1YQ4 A;  3AEG A;  4YTP A;  2H88 A;  1AR8 4;  2WU2 A;  3SFE A;  3AE3 A;  2PYJ A;  1XHX A;  1PIV 4;  2R06 4;  1AR6 4;  1VBC 4;  3VR9 A;  1XI1 A;  2PLV 4;  2X5I D;  4GB3 4;  1NA1 D;  1COV 4;  1R09 4;  2RMU 4;  4YTM A;  3FI7 A;  3AED A;  3VR8 A;  4Q4W 4;  1RHI 4;  2PW9 A;  3CIR A;  2B76 A;  3GQH A;  1HXS 4;  3SFD A;  1NEK A;  4YT0 A;  1PO2 4;  1H8T D;  4KX6 A;  1ZP0 A;  1ASJ 4;  1YQ3 A;  3AE9 A;  2R07 4;  3AE6 A;  1L0V A;  3AEB A;  1EAH 4;  2WS3 A;  2WDR A;  1PO1 4;  3AE4 A;  4Q4Y 4;  1RUI 4;  1AR9 4;  1PVC 4;  1RUC 4;  1RMU 4;  1NCQ D;  3P4P A;  1D4M 4;  3AEC A;  3SUC A;  3JBG 4;  2PYL A;  2EX3 A;  1HRI 4;  1HRV 4;  2WQY A;  2WDQ A;  2FBW A;  2RS5 4;  5C3J A;  1K5M D;  1NEN A;  3J8F 4;  3VRB A;  3ABV A;  2HWC 4;  3VRA A;  5C2T A;  3AE8 A;  3P4Q A;  4YSZ A;  1KFY A;  4YXD A;  2RM2 4;  1KF6 A;  2RS1 4;  2H89 A;  4PDW D;  1VBA 4; 
#chains in the Genus database with same CATH homology
 1AR9 4;  1PVC 4;  1RUC 4;  2PLV 4;  2RR1 4;  2X5I D;  4RHV 4;  4GB3 4;  1NA1 D;  1COV 4;  1OOP D;  3JD7 4;  1VBB 4;  1RMU 4;  1RUG 4;  1NCQ D;  1RUJ 4;  1R09 4;  1RVF 4;  1D4M 4;  1BEV 4;  2HWB 4;  2RMU 4;  4Q4X 4;  1MQT D;  1R08 4;  1RUF 4;  1RUH 4;  1HRI 4;  1VBD 4;  2RS3 4;  3JBG 4;  4Q4W 4;  1HRV 4;  1RHI 4;  1HXS 4;  1EV1 4;  2RS5 4;  1AR8 4;  4PDW D;  1K5M D;  1PO2 4;  3J8F 4;  1H8T D;  1RUE 4;  1AR7 4;  4Q4V 4;  1RUD 4;  1Z7S 4;  1VBA 4;  2HWC 4;  1ASJ 4;  1VRH 4;  2R07 4;  1VBE 4;  1EAH 4;  2R04 4;  1AL2 4;  1PIV 4;  1PO1 4;  2R06 4;  2RM2 4;  2RS1 4;  1POV 0;  4Q4Y 4;  1AR6 4;  1VBC 4;  1RUI 4; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...