4GCSA

Crystal structure of e. coli ompf porin in complex with ertapenem
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
333
structure length
333
Chain Sequence
GNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein/antibiotic
molecule keywords Outer membrane protein F
publication title The Binding of Antibiotics in OmpF Porin.
pubmed doi rcsb
source organism Escherichia coli
total genus 98
structure length 333
sequence length 333
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4gcsA00
2PRNA 1BH3A 5DL7A 4D5UA 2J1NA 3POUA 5FVNA 4C69X 8PRNA 5PRNA 4RJXA 3FYXA 2PORA 3PORA 1GFNA 4GCPA 1GFMA 1PHOA 1OSMA 3VZUX 6PRNA 4KRAA 3JTYA 3O0EA 2J4UP 1BT9A 3SY9A 5DL5A 5DL8A 3SZVA 4FMSA 1H6S1 2OMFA 2O4VA 3WI4A 2Y0HA 4FT6A 1HXUA 3PRNA 3SYSA 2Y0LA 2K4TA 4D65A 3VY8X 1GFQA 4BUMX 2FGRA 5DL6A 3HW9A 3VY9X 2ODJA 3SY7A 4FSOA 4LSFA 3UPGA 4D64A 3HWBA 4LSEA 3NSGA 3SYBA 3POQA 4FSPA 2XE2A 3VZWX 4FRXA 3T20A 3K19A 4GCSA 4FOZA 1MPFA 1HXTA 3WI5A 1GFPA 3VZTX 4LSHA 2Y2XA 3T24A 2QTKA 7PRNA 4AUIA 4KR8A 4LSIA 2Y0KA 4FRTA 4GCQA 5JDPA 1OPFA 1E54A 4RJWA 3SZDA 2XE5A 2FGQX 3A2SX 2ZFGA 4KR4A 1GFOA 2XG6A 2XE3A 3T0SA 1PRNA 3EMNX 4JFBA 2XE1A 3POXA 2ZLDA 1HXXA 3UU2A
chains in the Genus database with same CATH superfamily
5GTIO 2WJRA 2PRNA 2WVPA 1BH3A 3BRYA 5DL7A 3PF1A 4O4UA 4D5UA 4FZNA 4K3BA 4PR7A 4C00A 3PGUA 5B5EO 2GE4A 5GTHO 3DWNA 2J1NA 3HOLA 3KVDD 4AKRB 4AYMC 3POUA 5FVNA 4AYID 3JCUO 3AA7A 3KZIO 2N2MA 4C69X 3UAQA 8PRNA 5D5DA 2WJQA 5PRNA 1QJPA 4RJXA 3FYXA 2LHFA 2PORA 3LK42 2R4NA 3PORA 1GFNA 4GCPA 1MM5A 4F4BA 2XMXA 1GFMA 4AKRA 3DA3A 1PHOA 4RLCA 4PJ0O 4XNLA 1OSMA 3A0HO 4GHBA 3VZUX 4KRAA 6PRNA 3JTYA 3O0EA 4O3YA 2J4UP 2IWWA 1BT9A 4FZMA 5ADXL 3SY9A 5DL5A 5DL8A 3SZVA 4FMSA 1THQA 1ZHZA 1ZHYA 1H6S1 2AXTO 2OMFA 3AAAB 4IL6O 5G3AA 3AA7B 2O4VA 4K3CA 4O4XA 2KDYA 4PUXA 5KAFO 3VE2A 3WI4A 1BXWA 2Y0HA 3VE1A 1YS5A 4FT6A 1HXUA 3PRNA 3SYSA 2Y0LA 3AAEB 5ADXK 4RLBA 2KXPB 4E1TA 3AAAA 2JQYA 3GP6A 5E79O 5T5FA 2K4TA 3WU2O 3HOEA 4U9CA 4D65A 1QJ8A 2MNHA 2N2LA 3VY8X 1GFQA 1ZHWA 4UB6O 3BS0A 4BUMX 2F1CX 2R89A 4CTDA 3A0BO 4UB8O 2F1VA 3LK2B 2FGRA 1T16A 3AAEA 3PGRA 4JCHA 5DL6A 3HW9A 2KXPA 5TISO 3VY9X 4AYEC 1Q9GA 4N59A 1G90A 1ZHXA 2KC0A 2ODJA 3SY7A 4FSOA 4LSFA 4N75A 3LK3B 4AYDC 3UPGA 4D64A 2R4PA 3HWBA 2W80C 5KAIO 4LSEA 2ERVA 3LK2A 2R88A 2YNKA 2LFUA 2W81C 3NSGA 4FESA 3SYBA 3PQSA 1T1LA 2F1TA 2Y7SA 3POQA 4G75A 4XNKA 4FSPA 2R8AA 2XE2A 3VZWX 4FRXA 3T20A 3K19A 3LK3A 3AA1A 2M06A 4FOZA 4GCSA 1MPFA 5EE2A 1HXTA 2R4OA 3WI5A 1GFPA 3VZTX 4O3XB 3AA6A 4LSHA 3RBHA 1MM4A 1S5LO 2R4LA 2Y2XA 2X9KA 5IYUA 5G38A 3NJTA 4G76A 5H2FO 3T24A 2QTKA 3G7GA 4FQEA 4O3WA 7PRNA 4AUIA 1ORMA 4Z3TA 5AFUK 4KR8A 4LSIA 4O49A 5G39A 3QRCA 3LK41 5GV0A 1IZNB 4FZLA 2KZ7A 2Y0KA 1QJ9A 1P4TA 2M07A 3BRZA 4FRTA 4GCQA 3AA1B 1OPFA 4C4VB 4E1SA 5JDPA 3QRAA 3PQUA 1E54A 3DA4A 1Q9FA 4N74A 3AA6B 4RJWA 3SZDA 2XE5A 5B66O 2FGQX 2MHLA 1IZNA 3PGSA 5G26A 2XTRA 3A2SX 4C4VA 2ZFGA 4KR4A 4AFKA 1GFOA 5AFUL 4B61A 3DWOX 1ZHTA 3DZMA 2IWVA 2JMMA 2YPVA 3AA0B 4AZLA 3V8UA 2XG6A 2XE3A 2KZ7B 3T0SA 4AYNA 1PRNA 3EMNX 4O3ZA 4JFBA 2K0LA 4N58A 3TZGA 4AKMA 2XE1A 4RL9A 3POXA 2ZLDA 1HXXA 4GF4A 4QQ1A 2X27X 3AA0A 3UU2A 2XTQA 3C5OA 4FUVA
chains in the Genus database with same CATH topology
2PRNA 1BH3A 5DL7A 4O4UA 4D5UA 4FZNA 2GE4A 2J1NA 3HOLA 3KVDD 4AKRB 4AYMC 3POUA 5FVNA 4AYID 3AA7A 2N2MA 4C69X 3UAQA 8PRNA 5D5DA 5PRNA 1QJPA 4RJXA 3FYXA 2LHFA 2PORA 3LK42 3PORA 4F4BA 1GFNA 4GCPA 1MM5A 2XMXA 1GFMA 4AKRA 3DA3A 1PHOA 4RLCA 4XNLA 1OSMA 3VZUX 4GHBA 6PRNA 4KRAA 3JTYA 3O0EA 4O3YA 2J4UP 1BT9A 4FZMA 5ADXL 3SY9A 5DL5A 5DL8A 3SZVA 4FMSA 1THQA 1ZHZA 1ZHYA 1H6S1 2OMFA 3AAAB 3AA7B 2O4VA 4O4XA 2KDYA 4PUXA 3VE2A 3WI4A 1BXWA 2Y0HA 3VE1A 1YS5A 4FT6A 1HXUA 3PRNA 3SYSA 2Y0LA 3AAEB 5ADXK 4RLBA 2KXPB 4E1TA 3AAAA 5T5FA 3GP6A 2K4TA 3HOEA 4U9CA 4D65A 1QJ8A 2MNHA 2N2LA 3VY8X 1GFQA 1ZHWA 4BUMX 2F1VA 3LK2B 2FGRA 3AAEA 4JCHA 5DL6A 3HW9A 2KXPA 3VY9X 4AYEC 1Q9GA 4N59A 1G90A 1ZHXA 2KC0A 2ODJA 3SY7A 4FSOA 4LSFA 4AYDC 3LK3B 3UPGA 4D64A 3HWBA 2W80C 4AZLA 4LSEA 2ERVA 3LK2A 4FESA 2YNKA 2LFUA 2W81C 3NSGA 3SYBA 3PQSA 2F1TA 2Y7SA 3POQA 4G75A 4XNKA 4FSPA 2XE2A 3VZWX 4FRXA 3T20A 3K19A 3LK3A 3AA1A 2M06A 4FOZA 4GCSA 1MPFA 5EE2A 1HXTA 3WI5A 1GFPA 3VZTX 4O3XB 3AA6A 4LSHA 3RBHA 1MM4A 2Y2XA 5IYUA 4G76A 3T24A 2QTKA 3G7GA 4O3WA 7PRNA 4AUIA 1ORMA 4Z3TA 5AFUK 4KR8A 4LSIA 4O49A 3QRCA 3LK41 5GV0A 1IZNB 4FZLA 2KZ7A 2Y0KA 1QJ9A 1P4TA 2M07A 4FRTA 4GCQA 4E1SA 3AA1B 1OPFA 5JDPA 3QRAA 3PQUA 1E54A 3DA4A 1Q9FA 4RJWA 3AA6B 3SZDA 2XE5A 2FGQX 2MHLA 1IZNA 5G26A 2XTRA 3A2SX 2ZFGA 4KR4A 4AFKA 1GFOA 5AFUL 4B61A 1ZHTA 2JMMA 2YPVA 3AA0B 3V8UA 2XG6A 2XE3A 2KZ7B 3T0SA 4AYNA 1PRNA 3EMNX 4O3ZA 4JFBA 2K0LA 4N58A 3TZGA 4AKMA 2XE1A 4RL9A 3POXA 2ZLDA 1HXXA 4GF4A 4QQ1A 2X27X 3AA0A 3UU2A 2XTQA 3C5OA 4FUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRN A;  1BH3 A;  5DL7 A;  4D5U A;  2J1N A;  3POU A;  5FVN A;  4C69 X;  8PRN A;  5PRN A;  4RJX A;  3FYX A;  2POR A;  3POR A;  1GFN A;  4GCP A;  1GFM A;  1PHO A;  1OSM A;  3VZU X;  6PRN A;  4KRA A;  3JTY A;  3O0E A;  2J4U P;  1BT9 A;  3SY9 A;  5DL5 A;  5DL8 A;  3SZV A;  4FMS A;  1H6S 1;  2OMF A;  2O4V A;  3WI4 A;  2Y0H A;  4FT6 A;  1HXU A;  3PRN A;  3SYS A;  2Y0L A;  2K4T A;  4D65 A;  3VY8 X;  1GFQ A;  4BUM X;  2FGR A;  5DL6 A;  3HW9 A;  3VY9 X;  2ODJ A;  3SY7 A;  4FSO A;  4LSF A;  3UPG A;  4D64 A;  3HWB A;  4LSE A;  3NSG A;  3SYB A;  3POQ A;  4FSP A;  2XE2 A;  3VZW X;  4FRX A;  3T20 A;  3K19 A;  4GCS A;  4FOZ A;  1MPF A;  1HXT A;  3WI5 A;  1GFP A;  3VZT X;  4LSH A;  2Y2X A;  3T24 A;  2QTK A;  7PRN A;  4AUI A;  4KR8 A;  4LSI A;  2Y0K A;  4FRT A;  4GCQ A;  5JDP A;  1OPF A;  1E54 A;  4RJW A;  3SZD A;  2XE5 A;  2FGQ X;  3A2S X;  2ZFG A;  4KR4 A;  1GFO A;  2XG6 A;  2XE3 A;  3T0S A;  1PRN A;  3EMN X;  4JFB A;  2XE1 A;  3POX A;  2ZLD A;  1HXX A;  3UU2 A; 
#chains in the Genus database with same CATH topology
 5GTI O;  2WJR A;  2PRN A;  2WVP A;  1BH3 A;  3BRY A;  5DL7 A;  3PF1 A;  4O4U A;  4D5U A;  4FZN A;  4K3B A;  4PR7 A;  4C00 A;  3PGU A;  5B5E O;  2GE4 A;  5GTH O;  3DWN A;  2J1N A;  3HOL A;  3KVD D;  4AKR B;  4AYM C;  3POU A;  5FVN A;  4AYI D;  3JCU O;  3AA7 A;  3KZI O;  2N2M A;  4C69 X;  3UAQ A;  8PRN A;  5D5D A;  2WJQ A;  5PRN A;  1QJP A;  4RJX A;  3FYX A;  2LHF A;  2POR A;  3LK4 2;  2R4N A;  3POR A;  1GFN A;  4GCP A;  1MM5 A;  4F4B A;  2XMX A;  1GFM A;  4AKR A;  3DA3 A;  1PHO A;  4RLC A;  4PJ0 O;  4XNL A;  1OSM A;  3A0H O;  4GHB A;  3VZU X;  4KRA A;  6PRN A;  3JTY A;  3O0E A;  4O3Y A;  2J4U P;  2IWW A;  1BT9 A;  4FZM A;  5ADX L;  3SY9 A;  5DL5 A;  5DL8 A;  3SZV A;  4FMS A;  1THQ A;  1ZHZ A;  1ZHY A;  1H6S 1;  2AXT O;  2OMF A;  3AAA B;  4IL6 O;  5G3A A;  3AA7 B;  2O4V A;  4K3C A;  4O4X A;  2KDY A;  4PUX A;  5KAF O;  3VE2 A;  3WI4 A;  1BXW A;  2Y0H A;  3VE1 A;  1YS5 A;  4FT6 A;  1HXU A;  3PRN A;  3SYS A;  2Y0L A;  3AAE B;  5ADX K;  4RLB A;  2KXP B;  4E1T A;  3AAA A;  2JQY A;  3GP6 A;  5E79 O;  5T5F A;  2K4T A;  3WU2 O;  3HOE A;  4U9C A;  4D65 A;  1QJ8 A;  2MNH A;  2N2L A;  3VY8 X;  1GFQ A;  1ZHW A;  4UB6 O;  3BS0 A;  4BUM X;  2F1C X;  2R89 A;  4CTD A;  3A0B O;  4UB8 O;  2F1V A;  3LK2 B;  2FGR A;  1T16 A;  3AAE A;  3PGR A;  4JCH A;  5DL6 A;  3HW9 A;  2KXP A;  5TIS O;  3VY9 X;  4AYE C;  1Q9G A;  4N59 A;  1G90 A;  1ZHX A;  2KC0 A;  2ODJ A;  3SY7 A;  4FSO A;  4LSF A;  4N75 A;  3LK3 B;  4AYD C;  3UPG A;  4D64 A;  2R4P A;  3HWB A;  2W80 C;  5KAI O;  4LSE A;  2ERV A;  3LK2 A;  2R88 A;  2YNK A;  2LFU A;  2W81 C;  3NSG A;  4FES A;  3SYB A;  3PQS A;  1T1L A;  2F1T A;  2Y7S A;  3POQ A;  4G75 A;  4XNK A;  4FSP A;  2R8A A;  2XE2 A;  3VZW X;  4FRX A;  3T20 A;  3K19 A;  3LK3 A;  3AA1 A;  2M06 A;  4FOZ A;  4GCS A;  1MPF A;  5EE2 A;  1HXT A;  2R4O A;  3WI5 A;  1GFP A;  3VZT X;  4O3X B;  3AA6 A;  4LSH A;  3RBH A;  1MM4 A;  1S5L O;  2R4L A;  2Y2X A;  2X9K A;  5IYU A;  5G38 A;  3NJT A;  4G76 A;  5H2F O;  3T24 A;  2QTK A;  3G7G A;  4FQE A;  4O3W A;  7PRN A;  4AUI A;  1ORM A;  4Z3T A;  5AFU K;  4KR8 A;  4LSI A;  4O49 A;  5G39 A;  3QRC A;  3LK4 1;  5GV0 A;  1IZN B;  4FZL A;  2KZ7 A;  2Y0K A;  1QJ9 A;  1P4T A;  2M07 A;  3BRZ A;  4FRT A;  4GCQ A;  3AA1 B;  1OPF A;  4C4V B;  4E1S A;  5JDP A;  3QRA A;  3PQU A;  1E54 A;  3DA4 A;  1Q9F A;  4N74 A;  3AA6 B;  4RJW A;  3SZD A;  2XE5 A;  5B66 O;  2FGQ X;  2MHL A;  1IZN A;  3PGS A;  5G26 A;  2XTR A;  3A2S X;  4C4V A;  2ZFG A;  4KR4 A;  4AFK A;  1GFO A;  5AFU L;  4B61 A;  3DWO X;  1ZHT A;  3DZM A;  2IWV A;  2JMM A;  2YPV A;  3AA0 B;  4AZL A;  3V8U A;  2XG6 A;  2XE3 A;  2KZ7 B;  3T0S A;  4AYN A;  1PRN A;  3EMN X;  4O3Z A;  4JFB A;  2K0L A;  4N58 A;  3TZG A;  4AKM A;  2XE1 A;  4RL9 A;  3POX A;  2ZLD A;  1HXX A;  4GF4 A;  4QQ1 A;  2X27 X;  3AA0 A;  3UU2 A;  2XTQ A;  3C5O A;  4FUV A; 
#chains in the Genus database with same CATH homology
 2PRN A;  1BH3 A;  5DL7 A;  4O4U A;  4D5U A;  4FZN A;  2GE4 A;  2J1N A;  3HOL A;  3KVD D;  4AKR B;  4AYM C;  3POU A;  5FVN A;  4AYI D;  3AA7 A;  2N2M A;  4C69 X;  3UAQ A;  8PRN A;  5D5D A;  5PRN A;  1QJP A;  4RJX A;  3FYX A;  2LHF A;  2POR A;  3LK4 2;  3POR A;  4F4B A;  1GFN A;  4GCP A;  1MM5 A;  2XMX A;  1GFM A;  4AKR A;  3DA3 A;  1PHO A;  4RLC A;  4XNL A;  1OSM A;  3VZU X;  4GHB A;  6PRN A;  4KRA A;  3JTY A;  3O0E A;  4O3Y A;  2J4U P;  1BT9 A;  4FZM A;  5ADX L;  3SY9 A;  5DL5 A;  5DL8 A;  3SZV A;  4FMS A;  1THQ A;  1ZHZ A;  1ZHY A;  1H6S 1;  2OMF A;  3AAA B;  3AA7 B;  2O4V A;  4O4X A;  2KDY A;  4PUX A;  3VE2 A;  3WI4 A;  1BXW A;  2Y0H A;  3VE1 A;  1YS5 A;  4FT6 A;  1HXU A;  3PRN A;  3SYS A;  2Y0L A;  3AAE B;  5ADX K;  4RLB A;  2KXP B;  4E1T A;  3AAA A;  5T5F A;  3GP6 A;  2K4T A;  3HOE A;  4U9C A;  4D65 A;  1QJ8 A;  2MNH A;  2N2L A;  3VY8 X;  1GFQ A;  1ZHW A;  4BUM X;  2F1V A;  3LK2 B;  2FGR A;  3AAE A;  4JCH A;  5DL6 A;  3HW9 A;  2KXP A;  3VY9 X;  4AYE C;  1Q9G A;  4N59 A;  1G90 A;  1ZHX A;  2KC0 A;  2ODJ A;  3SY7 A;  4FSO A;  4LSF A;  4AYD C;  3LK3 B;  3UPG A;  4D64 A;  3HWB A;  2W80 C;  4AZL A;  4LSE A;  2ERV A;  3LK2 A;  4FES A;  2YNK A;  2LFU A;  2W81 C;  3NSG A;  3SYB A;  3PQS A;  2F1T A;  2Y7S A;  3POQ A;  4G75 A;  4XNK A;  4FSP A;  2XE2 A;  3VZW X;  4FRX A;  3T20 A;  3K19 A;  3LK3 A;  3AA1 A;  2M06 A;  4FOZ A;  4GCS A;  1MPF A;  5EE2 A;  1HXT A;  3WI5 A;  1GFP A;  3VZT X;  4O3X B;  3AA6 A;  4LSH A;  3RBH A;  1MM4 A;  2Y2X A;  5IYU A;  4G76 A;  3T24 A;  2QTK A;  3G7G A;  4O3W A;  7PRN A;  4AUI A;  1ORM A;  4Z3T A;  5AFU K;  4KR8 A;  4LSI A;  4O49 A;  3QRC A;  3LK4 1;  5GV0 A;  1IZN B;  4FZL A;  2KZ7 A;  2Y0K A;  1QJ9 A;  1P4T A;  2M07 A;  4FRT A;  4GCQ A;  4E1S A;  3AA1 B;  1OPF A;  5JDP A;  3QRA A;  3PQU A;  1E54 A;  3DA4 A;  1Q9F A;  4RJW A;  3AA6 B;  3SZD A;  2XE5 A;  2FGQ X;  2MHL A;  1IZN A;  5G26 A;  2XTR A;  3A2S X;  2ZFG A;  4KR4 A;  4AFK A;  1GFO A;  5AFU L;  4B61 A;  1ZHT A;  2JMM A;  2YPV A;  3AA0 B;  3V8U A;  2XG6 A;  2XE3 A;  2KZ7 B;  3T0S A;  4AYN A;  1PRN A;  3EMN X;  4O3Z A;  4JFB A;  2K0L A;  4N58 A;  3TZG A;  4AKM A;  2XE1 A;  4RL9 A;  3POX A;  2ZLD A;  1HXX A;  4GF4 A;  4QQ1 A;  2X27 X;  3AA0 A;  3UU2 A;  2XTQ A;  3C5O A;  4FUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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