4GEPA

Sulfite reductase hemoprotein cyanide complex reduced with crii edta
Total Genus 155
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
490
structure length
456
Chain Sequence
b'LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords SULFITE REDUCTASE HEMOPROTEIN
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 155
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4gepA02
3VM1A 5GEPA 3OR1A 3OR2B 4S3EA 3MMBA 4G9PA 3VLXA 2AKJA 3VKRA 4S23A 3VLZA 4HTRA 3B0NA 4S3BA 4S3CA 2V4JA 3MM8A 3OR2A 3VKPA 5AOPA 3MM6B 4GEPA 3B0GA 4G39A 1ZJ9A 3VKSA 3B0LA 3VKTA 2AOPA 1AOPA 4S39A 3VKQA 3MM5B 2XSJB 3MMAB 3MMCB 4S3DA 3MM9B 6GEPA 2GEPA 4G38A 4S3FA 3MM6A 3B0HA 2Y0FA 1ZJ8A 3MM7B 3B0JA 7GEPA 4S38A 4AOPA 2XSJA 3MM5A 3MM9A 3MMAA 3MMBB 3MMCA 4S3AA 3OR1B 8GEPA 3B0MA 3VM0A 3NOYA 3MM7A 3VLYA 3GEOA 2V4JB 3MM8B 3AOPA
chains in the Genus database with same CATH superfamily
3VM1A 5GEPA 3OR1A 3OR2B 4S3EA 3MMBA 4G9PA 3VLXA 2AKJA 3VKRA 4S23A 3VLZA 4HTRA 3B0NA 4S3BA 4S3CA 2V4JA 3MM8A 3OR2A 3VKPA 5AOPA 3MM6B 4GEPA 3B0GA 4G39A 1ZJ9A 3VKSA 3B0LA 3VKTA 2AOPA 1AOPA 4S39A 3VKQA 3MM5B 2XSJB 3MMAB 3MMCB 4S3DA 3MM9B 6GEPA 2GEPA 4G38A 4S3FA 3MM6A 3B0HA 2Y0FA 1ZJ8A 3MM7B 3B0JA 7GEPA 4S38A 4AOPA 2XSJA 3MM5A 3MM9A 3MMAA 3MMBB 3MMCA 4S3AA 3OR1B 8GEPA 3B0MA 3VM0A 3NOYA 3MM7A 3VLYA 3GEOA 2V4JB 3MM8B 3AOPA
chains in the Genus database with same CATH topology
3VM1A 5GEPA 3OR1A 3OR2B 4S3EA 3MMBA 4G9PA 3VLXA 2AKJA 3VKRA 4S23A 3VLZA 4HTRA 3B0NA 4S3BA 4S3CA 2V4JA 3MM8A 3OR2A 3VKPA 5AOPA 3MM6B 4GEPA 3B0GA 4G39A 1ZJ9A 3VKSA 3B0LA 3VKTA 2AOPA 1AOPA 4S39A 3VKQA 3MM5B 2XSJB 3MMAB 3MMCB 4S3DA 3MM9B 6GEPA 2GEPA 4G38A 4S3FA 3MM6A 3B0HA 2Y0FA 1ZJ8A 3MM7B 3B0JA 7GEPA 4S38A 4AOPA 2XSJA 3MM5A 3MM9A 3MMAA 3MMBB 3MMCA 4S3AA 3OR1B 8GEPA 3B0MA 3VM0A 3NOYA 3MM7A 3VLYA 3GEOA 2V4JB 3MM8B 3AOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VM1 A;  5GEP A;  3OR1 A;  3OR2 B;  4S3E A;  3MMB A;  4G9P A;  3VLX A;  2AKJ A;  3VKR A;  4S23 A;  3VLZ A;  4HTR A;  3B0N A;  4S3B A;  4S3C A;  2V4J A;  3MM8 A;  3OR2 A;  3VKP A;  5AOP A;  3MM6 B;  4GEP A;  3B0G A;  4G39 A;  1ZJ9 A;  3VKS A;  3B0L A;  3VKT A;  2AOP A;  1AOP A;  4S39 A;  3VKQ A;  3MM5 B;  2XSJ B;  3MMA B;  3MMC B;  4S3D A;  3MM9 B;  6GEP A;  2GEP A;  4G38 A;  4S3F A;  3MM6 A;  3B0H A;  2Y0F A;  1ZJ8 A;  3MM7 B;  3B0J A;  7GEP A;  4S38 A;  4AOP A;  2XSJ A;  3MM5 A;  3MM9 A;  3MMA A;  3MMB B;  3MMC A;  4S3A A;  3OR1 B;  8GEP A;  3B0M A;  3VM0 A;  3NOY A;  3MM7 A;  3VLY A;  3GEO A;  2V4J B;  3MM8 B;  3AOP A; 
#chains in the Genus database with same CATH topology
 3VM1 A;  5GEP A;  3OR1 A;  3OR2 B;  4S3E A;  3MMB A;  4G9P A;  3VLX A;  2AKJ A;  3VKR A;  4S23 A;  3VLZ A;  4HTR A;  3B0N A;  4S3B A;  4S3C A;  2V4J A;  3MM8 A;  3OR2 A;  3VKP A;  5AOP A;  3MM6 B;  4GEP A;  3B0G A;  4G39 A;  1ZJ9 A;  3VKS A;  3B0L A;  3VKT A;  2AOP A;  1AOP A;  4S39 A;  3VKQ A;  3MM5 B;  2XSJ B;  3MMA B;  3MMC B;  4S3D A;  3MM9 B;  6GEP A;  2GEP A;  4G38 A;  4S3F A;  3MM6 A;  3B0H A;  2Y0F A;  1ZJ8 A;  3MM7 B;  3B0J A;  7GEP A;  4S38 A;  4AOP A;  2XSJ A;  3MM5 A;  3MM9 A;  3MMA A;  3MMB B;  3MMC A;  4S3A A;  3OR1 B;  8GEP A;  3B0M A;  3VM0 A;  3NOY A;  3MM7 A;  3VLY A;  3GEO A;  2V4J B;  3MM8 B;  3AOP A; 
#chains in the Genus database with same CATH homology
 3VM1 A;  5GEP A;  3OR1 A;  3OR2 B;  4S3E A;  3MMB A;  4G9P A;  3VLX A;  2AKJ A;  3VKR A;  4S23 A;  3VLZ A;  4HTR A;  3B0N A;  4S3B A;  4S3C A;  2V4J A;  3MM8 A;  3OR2 A;  3VKP A;  5AOP A;  3MM6 B;  4GEP A;  3B0G A;  4G39 A;  1ZJ9 A;  3VKS A;  3B0L A;  3VKT A;  2AOP A;  1AOP A;  4S39 A;  3VKQ A;  3MM5 B;  2XSJ B;  3MMA B;  3MMC B;  4S3D A;  3MM9 B;  6GEP A;  2GEP A;  4G38 A;  4S3F A;  3MM6 A;  3B0H A;  2Y0F A;  1ZJ8 A;  3MM7 B;  3B0J A;  7GEP A;  4S38 A;  4AOP A;  2XSJ A;  3MM5 A;  3MM9 A;  3MMA A;  3MMB B;  3MMC A;  4S3A A;  3OR1 B;  8GEP A;  3B0M A;  3VM0 A;  3NOY A;  3MM7 A;  3VLY A;  3GEO A;  2V4J B;  3MM8 B;  3AOP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...