4GEUA

Structure of a stabilised cesas-6 dimer
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
167
structure length
138
Chain Sequence
TSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCPTEINIILDAEKNFCSFELFSKTPWSKGKIFSIKLHAVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Spindle assembly abnormal protein 6
publication title Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 28
structure length 138
sequence length 167
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16531 SAS-6_N Centriolar protein SAS N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.20 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 Dna Repair Protein Xrcc4; Chain: A, domain 1 4geuA00
4GFAA 4G79A 4GEXA 2Y3VA 4GFCA 4GEUA 3Q0XA 4CKMA 3PYIA 4CKNA 3Q0YA 2Y3WA 4CKPA
chains in the Genus database with same CATH superfamily
5CJ0A 2Y3VA 4CKMA 3SR2A 5CHXA 4GEXA 4GEUA 4GFCA 4CKNA 3RWRD 3Q0YA 3RWRA 1FU1A 2Y3WA 4CKPA 4GFAA 2QM4A 4G79A 4XA4A 3SR2C 1IK9A 5CJ4A 3II6A 3MUDA 3Q0XA 2R9AA 3PYIA
chains in the Genus database with same CATH topology
4GFAA 4G79A 4GEXA 2Y3VA 4GFCA 4GEUA 3Q0XA 4CKMA 3PYIA 4CKNA 3Q0YA 2Y3WA 4CKPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GFA A;  4G79 A;  4GEX A;  2Y3V A;  4GFC A;  4GEU A;  3Q0X A;  4CKM A;  3PYI A;  4CKN A;  3Q0Y A;  2Y3W A;  4CKP A; 
#chains in the Genus database with same CATH topology
 5CJ0 A;  2Y3V A;  4CKM A;  3SR2 A;  5CHX A;  4GEX A;  4GEU A;  4GFC A;  4CKN A;  3RWR D;  3Q0Y A;  3RWR A;  1FU1 A;  2Y3W A;  4CKP A;  4GFA A;  2QM4 A;  4G79 A;  4XA4 A;  3SR2 C;  1IK9 A;  5CJ4 A;  3II6 A;  3MUD A;  3Q0X A;  2R9A A;  3PYI A; 
#chains in the Genus database with same CATH homology
 4GFA A;  4G79 A;  4GEX A;  2Y3V A;  4GFC A;  4GEU A;  3Q0X A;  4CKM A;  3PYI A;  4CKN A;  3Q0Y A;  2Y3W A;  4CKP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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