4GFCA

N-terminal coiled-coil dimer of c.elegans sas-6, crystal form b
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
169
structure length
165
Chain Sequence
TSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNEEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPGSKGKIFSIKLHAVRGDHLISHLLKICSSQAVKLSTFKSADELA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Spindle assembly abnormal protein 6
publication title Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 41
structure length 165
sequence length 169
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16531 SAS-6_N Centriolar protein SAS N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.20 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 Dna Repair Protein Xrcc4; Chain: A, domain 1 4gfcA00
4CKNA 4GFCA 3Q0YA 4GEUA 4GEXA 2Y3VA 4CKMA 4CKPA 3PYIA 3Q0XA 2Y3WA 4GFAA 4G79A
chains in the Genus database with same CATH superfamily
2Y3VA 2QM4A 2Y3WA 4GFCA 3SR2C 3Q0YA 4GEUA 1FU1A 3RWRD 3SR2A 3RWRA 3Q0XA 4GFAA 3II6A 4XA4A 5CJ4A 4CKMA 4G79A 3PYIA 4CKNA 1IK9A 5CHXA 4GEXA 4CKPA 3MUDA 5CJ0A 2R9AA
chains in the Genus database with same CATH topology
4CKNA 4GFCA 3Q0YA 4GEUA 4GEXA 2Y3VA 4CKMA 4CKPA 3PYIA 3Q0XA 2Y3WA 4GFAA 4G79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CKN A;  4GFC A;  3Q0Y A;  4GEU A;  4GEX A;  2Y3V A;  4CKM A;  4CKP A;  3PYI A;  3Q0X A;  2Y3W A;  4GFA A;  4G79 A; 
#chains in the Genus database with same CATH topology
 2Y3V A;  2QM4 A;  2Y3W A;  4GFC A;  3SR2 C;  3Q0Y A;  4GEU A;  1FU1 A;  3RWR D;  3SR2 A;  3RWR A;  3Q0X A;  4GFA A;  3II6 A;  4XA4 A;  5CJ4 A;  4CKM A;  4G79 A;  3PYI A;  4CKN A;  1IK9 A;  5CHX A;  4GEX A;  4CKP A;  3MUD A;  5CJ0 A;  2R9A A; 
#chains in the Genus database with same CATH homology
 4CKN A;  4GFC A;  3Q0Y A;  4GEU A;  4GEX A;  2Y3V A;  4CKM A;  4CKP A;  3PYI A;  3Q0X A;  2Y3W A;  4GFA A;  4G79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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