4GFPA

2.7 angstrom resolution structure of 3-phosphoshikimate 1-carboxyvinyltransferase (aroa) from coxiella burnetii in a second conformational state
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
431
structure length
408
Chain Sequence
DYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTEEPTADITVRHARLKGIDIPPDQVPLDEFPVLLIAAAVAQGKTVLRDLRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNTSFPNFVELANEVGMNVKGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 3-phosphoshikimate 1-carboxyvinyltransferase
publication title 2.7 Angstrom resolution structure of 3-phosphoshikimate 1-carboxyvinyltransferase (AroA) from Coxiella burnetii in second conformational state
rcsb
source organism Coxiella burnetii
total genus 126
structure length 408
sequence length 431
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2012-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4gfpA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4gfpA01
4N3PA 3FJXA 2PQDA 3SWGA 3ISSA 4R7UA 1RF6A 3KR6A 4E7EA 1X8RA 3ZH3A 4E7FA 3KQJA 4GFPA 5BS5A 3SLHA 3LTHA 1DLGA 3SG1A 2QFQA 1G6TA 3FK0A 1UAEA 1MI4A 3SPBA 4E7GA 3SWEA 4E7DA 2GGDA 2RL1A 4EIIA 3SWDA 2O0ZA 3UPKA 5U4HA 3TR1A 1EYNA 3VCYA 4ZNDA 3TI2A 2BJBA 1X8TA 1Q36A 1EJCA 2O15A 2QFUA 2GG6A 1RYWA 3FJZA 1Q3GA 3RMTA 3SU9A 3SWAA 3V5VA 2O0EA 4E7CA 2O0BA 3SWQA 2GG4A 2AA9A 3FK1A 1P89A 1G6SA 1RF5A 2O0DA 1EJDA 5BUFA 1YBGA 1A2NA 4E7BA 4EGRA 2QFSA 3SWIA 2RL2A 2PQBA 3KQAA 2O0XA 2GGAA 5BQ2A 2PQCA 3NVSA 3ZH4A 1P88A 3R38A 2QFTA 1RF4A 3V4TA 4FQDA 2YVWA 2AAYA 3ROIA 2PQ9A 2Z2CA 1NAWA
chains in the Genus database with same CATH superfamily
4N3PA 3FJXA 2PQDA 3SWGA 3ISSA 4R7UA 1RF6A 3KR6A 4E7EA 1X8RA 3ZH3A 4E7FA 3KQJA 4GFPA 5BS5A 3SLHA 3LTHA 1DLGA 3SG1A 2QFQA 3TUTA 1G6TA 3PQVA 1QMIA 3FK0A 1UAEA 3KGDA 4CLQA 1MI4A 3SPBA 4E7GA 3SWEA 4E7DA 2GGDA 2RL1A 4EIIA 3SWDA 2O0ZA 3UPKA 5U4HA 3TR1A 1EYNA 3TUXA 3VCYA 4ZNDA 3TI2A 2BJBA 1X8TA 1Q36A 1EJCA 2O15A 2QFUA 2GG6A 1RYWA 3FJZA 1Q3GA 4O89A 3RMTA 3SU9A 3SWAA 3V5VA 2O0EA 4E7CA 2O0BA 3SWQA 2GG4A 2AA9A 3FK1A 1P89A 1G6SA 1RF5A 2O0DA 1EJDA 5BUFA 1YBGA 1A2NA 4E7BA 4EGRA 2QFSA 3SWIA 2RL2A 2PQBA 3KQAA 2O0XA 2GGAA 3TW3A 5BQ2A 2PQCA 3NVSA 4O8JA 3ZH4A 1P88A 3R38A 2QFTA 1RF4A 3V4TA 1QMHA 4FQDA 2YVWA 2AAYA 3TV1A 3ROIA 2PQ9A 2Z2CA 1NAWA
chains in the Genus database with same CATH topology
4N3PA 3FJXA 2PQDA 3SWGA 3ISSA 4R7UA 1RF6A 3KR6A 4E7EA 1X8RA 3ZH3A 4E7FA 3KQJA 4GFPA 5BS5A 3SLHA 3LTHA 1DLGA 3SG1A 2QFQA 1G6TA 3FK0A 1UAEA 1MI4A 3SPBA 4E7GA 3SWEA 4E7DA 2GGDA 2RL1A 4EIIA 3SWDA 2O0ZA 3UPKA 5U4HA 3TR1A 1EYNA 3VCYA 4ZNDA 3TI2A 2BJBA 1X8TA 1Q36A 1EJCA 2O15A 2QFUA 2GG6A 1RYWA 3FJZA 1Q3GA 3RMTA 3SU9A 3SWAA 3V5VA 2O0EA 4E7CA 2O0BA 3SWQA 2GG4A 2AA9A 3FK1A 1P89A 1G6SA 1RF5A 2O0DA 1EJDA 5BUFA 1YBGA 1A2NA 4E7BA 4EGRA 2QFSA 3SWIA 2RL2A 2PQBA 3KQAA 2O0XA 2GGAA 5BQ2A 2PQCA 3NVSA 3ZH4A 1P88A 3R38A 2QFTA 1RF4A 3V4TA 4FQDA 2YVWA 2AAYA 3ROIA 2PQ9A 2Z2CA 1NAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N3P A;  3FJX A;  2PQD A;  3SWG A;  3ISS A;  4R7U A;  1RF6 A;  3KR6 A;  4E7E A;  1X8R A;  3ZH3 A;  4E7F A;  3KQJ A;  4GFP A;  5BS5 A;  3SLH A;  3LTH A;  1DLG A;  3SG1 A;  2QFQ A;  1G6T A;  3FK0 A;  1UAE A;  1MI4 A;  3SPB A;  4E7G A;  3SWE A;  4E7D A;  2GGD A;  2RL1 A;  4EII A;  3SWD A;  2O0Z A;  3UPK A;  5U4H A;  3TR1 A;  1EYN A;  3VCY A;  4ZND A;  3TI2 A;  2BJB A;  1X8T A;  1Q36 A;  1EJC A;  2O15 A;  2QFU A;  2GG6 A;  1RYW A;  3FJZ A;  1Q3G A;  3RMT A;  3SU9 A;  3SWA A;  3V5V A;  2O0E A;  4E7C A;  2O0B A;  3SWQ A;  2GG4 A;  2AA9 A;  3FK1 A;  1P89 A;  1G6S A;  1RF5 A;  2O0D A;  1EJD A;  5BUF A;  1YBG A;  1A2N A;  4E7B A;  4EGR A;  2QFS A;  3SWI A;  2RL2 A;  2PQB A;  3KQA A;  2O0X A;  2GGA A;  5BQ2 A;  2PQC A;  3NVS A;  3ZH4 A;  1P88 A;  3R38 A;  2QFT A;  1RF4 A;  3V4T A;  4FQD A;  2YVW A;  2AAY A;  3ROI A;  2PQ9 A;  2Z2C A;  1NAW A; 
#chains in the Genus database with same CATH topology
 4N3P A;  3FJX A;  2PQD A;  3SWG A;  3ISS A;  4R7U A;  1RF6 A;  3KR6 A;  4E7E A;  1X8R A;  3ZH3 A;  4E7F A;  3KQJ A;  4GFP A;  5BS5 A;  3SLH A;  3LTH A;  1DLG A;  3SG1 A;  2QFQ A;  3TUT A;  1G6T A;  3PQV A;  1QMI A;  3FK0 A;  1UAE A;  3KGD A;  4CLQ A;  1MI4 A;  3SPB A;  4E7G A;  3SWE A;  4E7D A;  2GGD A;  2RL1 A;  4EII A;  3SWD A;  2O0Z A;  3UPK A;  5U4H A;  3TR1 A;  1EYN A;  3TUX A;  3VCY A;  4ZND A;  3TI2 A;  2BJB A;  1X8T A;  1Q36 A;  1EJC A;  2O15 A;  2QFU A;  2GG6 A;  1RYW A;  3FJZ A;  1Q3G A;  4O89 A;  3RMT A;  3SU9 A;  3SWA A;  3V5V A;  2O0E A;  4E7C A;  2O0B A;  3SWQ A;  2GG4 A;  2AA9 A;  3FK1 A;  1P89 A;  1G6S A;  1RF5 A;  2O0D A;  1EJD A;  5BUF A;  1YBG A;  1A2N A;  4E7B A;  4EGR A;  2QFS A;  3SWI A;  2RL2 A;  2PQB A;  3KQA A;  2O0X A;  2GGA A;  3TW3 A;  5BQ2 A;  2PQC A;  3NVS A;  4O8J A;  3ZH4 A;  1P88 A;  3R38 A;  2QFT A;  1RF4 A;  3V4T A;  1QMH A;  4FQD A;  2YVW A;  2AAY A;  3TV1 A;  3ROI A;  2PQ9 A;  2Z2C A;  1NAW A; 
#chains in the Genus database with same CATH homology
 4N3P A;  3FJX A;  2PQD A;  3SWG A;  3ISS A;  4R7U A;  1RF6 A;  3KR6 A;  4E7E A;  1X8R A;  3ZH3 A;  4E7F A;  3KQJ A;  4GFP A;  5BS5 A;  3SLH A;  3LTH A;  1DLG A;  3SG1 A;  2QFQ A;  1G6T A;  3FK0 A;  1UAE A;  1MI4 A;  3SPB A;  4E7G A;  3SWE A;  4E7D A;  2GGD A;  2RL1 A;  4EII A;  3SWD A;  2O0Z A;  3UPK A;  5U4H A;  3TR1 A;  1EYN A;  3VCY A;  4ZND A;  3TI2 A;  2BJB A;  1X8T A;  1Q36 A;  1EJC A;  2O15 A;  2QFU A;  2GG6 A;  1RYW A;  3FJZ A;  1Q3G A;  3RMT A;  3SU9 A;  3SWA A;  3V5V A;  2O0E A;  4E7C A;  2O0B A;  3SWQ A;  2GG4 A;  2AA9 A;  3FK1 A;  1P89 A;  1G6S A;  1RF5 A;  2O0D A;  1EJD A;  5BUF A;  1YBG A;  1A2N A;  4E7B A;  4EGR A;  2QFS A;  3SWI A;  2RL2 A;  2PQB A;  3KQA A;  2O0X A;  2GGA A;  5BQ2 A;  2PQC A;  3NVS A;  3ZH4 A;  1P88 A;  3R38 A;  2QFT A;  1RF4 A;  3V4T A;  4FQD A;  2YVW A;  2AAY A;  3ROI A;  2PQ9 A;  2Z2C A;  1NAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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