4GGKA

Crystal structure of zucchini from mouse (mzuc / pld6 / mitopld) bound to tungstate
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
174
structure length
164
Chain Sequence
PRREVLFFPSQVTCTEALLQAPGCPCSLPHSESSLSRLLRALLAARSSLELCLFAFSSPQLGRAVQLLHQRGVRVRVITDCDYMGSQIGLLRKAGIQVRHDQDLGYMHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLIMEDTEYVRLFLEEFERIWEEFDPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Mitochondrial cardiolipin hydrolase
publication title The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis.
pubmed doi rcsb
source organism Mus musculus
total genus 54
structure length 164
sequence length 174
ec nomenclature ec 3.1.4.-:
pdb deposition date 2012-08-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13091 PLDc_2 PLD-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.870.10 Alpha Beta 2-Layer Sandwich Endonuclease; Chain A Endonuclease Chain A 4ggkA00
5BOXA 4H4AA 1Q32A 3SQ3A 1MU7A 3QPHA 2ZE9A 5LZKA 1RFFA 1RFIA 4GEMA 2F5TX 1XDPA 4RCTA 1RG1A 1RH0A 1F0IA 1RG2A 4GELA 1BYRA 5BPIA 4GGJA 1BYSA 3HSIA 1V0VA 3SQ7A 4URJA 2O8RA 2ZE4A 1V0UA 1V0YA 4GENA 5BQTA 1V0RA 1XDOA 1JY1A 1MU9A 1V0SA 3SQ8A 1V0WA 1QZQA 5BPDA 1RGTA 1RGUA 2C1LA 1NOPA 1V0TA 3SQ5A 4GGKA
chains in the Genus database with same CATH superfamily
5BOXA 4H4AA 1Q32A 3SQ3A 1MU7A 2YMBA 3QPHA 2ZE9A 5LZKA 1RFFA 1RFIA 3HRLA 4GEMA 2F5TX 1XDPA 4RCTA 1RG1A 1RH0A 1F0IA 1RG2A 4GELA 1BYRA 5BPIA 4GGJA 1BYSA 3HSIA 1V0VA 3SQ7A 4URJA 1ODGA 2O8RA 2ZE4A 1V0UA 1V0YA 4GENA 5BQTA 4A5ZA 1V0RA 1XDOA 3R3PA 1JY1A 1MU9A 1V0SA 3SQ8A 1V0WA 1QZQA 5BPDA 1RGTA 1RGUA 2C1LA 1NOPA 1CW0A 1V0TA 1VSRA 3SQ5A 4GGKA
chains in the Genus database with same CATH topology
5BOXA 4H4AA 1Q32A 3SQ3A 1MU7A 3QPHA 2ZE9A 5LZKA 1RFFA 1RFIA 4GEMA 2F5TX 1XDPA 4RCTA 1RG1A 1RH0A 1F0IA 1RG2A 4GELA 1BYRA 5BPIA 4GGJA 1BYSA 3HSIA 1V0VA 3SQ7A 4URJA 2O8RA 2ZE4A 1V0UA 1V0YA 4GENA 5BQTA 1V0RA 1XDOA 1JY1A 1MU9A 1V0SA 3SQ8A 1V0WA 1QZQA 5BPDA 1RGTA 1RGUA 2C1LA 1NOPA 1V0TA 3SQ5A 4GGKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BOX A;  4H4A A;  1Q32 A;  3SQ3 A;  1MU7 A;  3QPH A;  2ZE9 A;  5LZK A;  1RFF A;  1RFI A;  4GEM A;  2F5T X;  1XDP A;  4RCT A;  1RG1 A;  1RH0 A;  1F0I A;  1RG2 A;  4GEL A;  1BYR A;  5BPI A;  4GGJ A;  1BYS A;  3HSI A;  1V0V A;  3SQ7 A;  4URJ A;  2O8R A;  2ZE4 A;  1V0U A;  1V0Y A;  4GEN A;  5BQT A;  1V0R A;  1XDO A;  1JY1 A;  1MU9 A;  1V0S A;  3SQ8 A;  1V0W A;  1QZQ A;  5BPD A;  1RGT A;  1RGU A;  2C1L A;  1NOP A;  1V0T A;  3SQ5 A;  4GGK A; 
#chains in the Genus database with same CATH topology
 5BOX A;  4H4A A;  1Q32 A;  3SQ3 A;  1MU7 A;  2YMB A;  3QPH A;  2ZE9 A;  5LZK A;  1RFF A;  1RFI A;  3HRL A;  4GEM A;  2F5T X;  1XDP A;  4RCT A;  1RG1 A;  1RH0 A;  1F0I A;  1RG2 A;  4GEL A;  1BYR A;  5BPI A;  4GGJ A;  1BYS A;  3HSI A;  1V0V A;  3SQ7 A;  4URJ A;  1ODG A;  2O8R A;  2ZE4 A;  1V0U A;  1V0Y A;  4GEN A;  5BQT A;  4A5Z A;  1V0R A;  1XDO A;  3R3P A;  1JY1 A;  1MU9 A;  1V0S A;  3SQ8 A;  1V0W A;  1QZQ A;  5BPD A;  1RGT A;  1RGU A;  2C1L A;  1NOP A;  1CW0 A;  1V0T A;  1VSR A;  3SQ5 A;  4GGK A; 
#chains in the Genus database with same CATH homology
 5BOX A;  4H4A A;  1Q32 A;  3SQ3 A;  1MU7 A;  3QPH A;  2ZE9 A;  5LZK A;  1RFF A;  1RFI A;  4GEM A;  2F5T X;  1XDP A;  4RCT A;  1RG1 A;  1RH0 A;  1F0I A;  1RG2 A;  4GEL A;  1BYR A;  5BPI A;  4GGJ A;  1BYS A;  3HSI A;  1V0V A;  3SQ7 A;  4URJ A;  2O8R A;  2ZE4 A;  1V0U A;  1V0Y A;  4GEN A;  5BQT A;  1V0R A;  1XDO A;  1JY1 A;  1MU9 A;  1V0S A;  3SQ8 A;  1V0W A;  1QZQ A;  5BPD A;  1RGT A;  1RGU A;  2C1L A;  1NOP A;  1V0T A;  3SQ5 A;  4GGK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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