4GHBA

Crystal structure of a porin-like protein (bacuni_01323) from bacteroides uniformis atcc 8492 at 2.32 a resolution
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
257
structure length
255
Chain Sequence
b'TYPTTPFSKIELKEVIESDAQPVTATHTYLYNSAGRLTGYTGKQSFTAGDELFEIENTTTVEYKDHQAVITDEAGTVSTYTLNDKGYATTCTSQDMAGNTRTYTFSYLINTEDKYYLENITEKLDDGKEYSFITIDYSNFRALRIQQKVDTFEHNSTATTPSGNEIANISEIPSLFITDMYPLSMHAVAIYGKILGEPANYLITQLIPDSESEETTTYTYTLDNRGIVTSCHAVVRHIRNGYEQDYTRTVNYTIE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein
publication title Crystal structure of a hypothetical protein (BACUNI_01323) from Bacteroides uniformis ATCC 8492 at 2.32 A resolution
rcsb
source organism Bacteroides uniformis
molecule tags Structural genomics, unknown function
total genus 55
structure length 255
sequence length 257
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15283 DUF4595 Domain of unknown function (DUF4595) with porin-like fold
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.190 Mainly Beta Beta Barrel Porin Porin 4ghbA00
4GHBA
chains in the Genus database with same CATH superfamily
2XTQA 5E79O 3FYXA 2R89A 3AA7B 3HOLA 4IL6O 3DA3A 4GCPA 4LSFA 2J1NA 5AFUL 1G90A 3AA0A 3G7GA 4FZNA 1ZHYA 2KXPB 5D5DA 3PF1A 3QRAA 8PRNA 2R4OA 2Y0KA 4GF4A 2XE5A 2X27X 4RJXA 2JQYA 1PRNA 3PGRA 3K19A 4FOZA 1MM5A 3JTYA 4O3XB 4Z3TA 3EMNX 4FQEA 4N59A 2FGRA 2XMXA 4O3YA 3UU2A 1PHOA 3NJTA 1S5LO 4G76A 2WJQA 3WI4A 3PRNA 3SY9A 3VZWX 1GFMA 4FRTA 4JCHA 4E1TA 4AZLA 4D65A 3KVDD 3TZGA 4FUVA 3LK2A 4O4UA 1ORMA 4AUIA 3HW9A 2Y0LA 5B66O 1Q9GA 3LK3B 5FVNA 6PRNA 2KZ7A 2N2LA 4KRAA 1QJPA 2XE2A 1H6S1 1QJ8A 2M07A 4JFBA 3VY8X 4C4VA 4RJWA 2X9KA 3UAQA 1HXTA 4FMSA 5KAIO 3WU2O 2W80C 4K3CA 5H2FO 5ADXL 5GV0A 4AKRB 2MNHA 5IYUA 2IWWA 2ZFGA 3RBHA 2Y2XA 2Y7SA 3POXA 5DL5A 2GE4A 2KC0A 3PGSA 3T20A 1ZHTA 2MHLA 3AA6B 1THQA 3AA1A 4AYMC 3T0SA 1ZHWA 1OSMA 3AAAA 3AAEA 2J4UP 4C00A 2ODJA 2IWVA 1OPFA 4O3WA 3SYSA 2K4TA 4PJ0O 3BRZA 3VE1A 1IZNB 2QTKA 4CTDA 4GCQA 4UB6O 2F1VA 2O4VA 3AA7A 1MM4A 5DL6A 5G39A 4O4XA 1T16A 2W81C 3JCUO 1GFPA 1BT9A 3NSGA 3A0HO 3DZMA 4N75A 4RLBA 2AXTO 5G3AA 5GTIO 4XNLA 4AYDC 4AYNA 3HOEA 4PR7A 2KXPA 1T1LA 4FZLA 4FSPA 3SYBA 5PRNA 3AA0B 1MPFA 2N2MA 5G38A 5T5FA 7PRNA 4AKMA 2JMMA 2XE3A 4N58A 3PORA 4XNKA 5AFUK 2R8AA 2Y0HA 2LHFA 3A0BO 3DWOX 3O0EA 2FGQX 1GFQA 4GCSA 4KR8A 4FZMA 1BXWA 2YPVA 3LK41 4UB8O 5DL7A 4LSIA 4RL9A 5EE2A 4GHBA 5G26A 4AFKA 4AYID 2XE1A 1E54A 1BH3A 2KDYA 2LFUA 2OMFA 4LSHA 4LSEA 5DL8A 3PQUA 2F1CX 3LK3A 1HXUA 3GP6A 1YS5A 1Q9FA 3LK2B 3A2SX 3SY7A 3QRCA 3VZTX 4B61A 4K3BA 3WI5A 5JDPA 4AYEC 2YNKA 3VE2A 1ZHZA 1ZHXA 1HXXA 3BS0A 2KZ7B 2R4PA 3PQSA 2F1TA 4O49A 4QQ1A 4FESA 4N74A 4PUXA 4C4VB 4D5UA 2ZLDA 4AKRA 2WVPA 5GTHO 4G75A 2XTRA 4KR4A 3VZUX 4U9CA 2PORA 4F4BA 3KZIO 3HWBA 3POQA 2PRNA 3SZDA 3PGUA 1QJ9A 2R4LA 3AA6A 4FRXA 2K0LA 5KAFO 4E1SA 4FSOA 2R4NA 1P4TA 2WJRA 2ERVA 2M06A 4FT6A 3VY9X 2R88A 1GFNA 4D64A 4BUMX 3C5OA 2XG6A 3AA1B 3DWNA 5ADXK 3AAAB 3AAEB 1IZNA 3LK42 3SZVA 3T24A 3UPGA 3POUA 4RLCA 5TISO 1GFOA 3DA4A 3V8UA 4O3ZA 3BRYA 5B5EO 4C69X
chains in the Genus database with same CATH topology
2XTQA 3FYXA 3AA7B 3HOLA 4LSFA 3DA3A 4GCPA 5AFUL 2J1NA 3AA0A 3G7GA 4FZNA 1ZHYA 2KXPB 5D5DA 3QRAA 8PRNA 2Y0KA 4GF4A 2XE5A 2X27X 4RJXA 4AYDC 1PRNA 4FOZA 3K19A 4O3XB 1MM5A 3JTYA 4Z3TA 3EMNX 4N59A 2FGRA 2XMXA 4O3YA 3UU2A 1PHOA 4G76A 3WI4A 3PRNA 3SY9A 3VZWX 1GFMA 4FRTA 4JCHA 4E1TA 4AZLA 4D65A 3KVDD 4FUVA 3LK2A 4O4UA 1ORMA 4AUIA 3HW9A 2Y0LA 6PRNA 1Q9GA 3LK3B 5FVNA 2KZ7A 2N2LA 4KRAA 1QJPA 2XE2A 1H6S1 1QJ8A 2M07A 4JFBA 3VY8X 4RJWA 3UAQA 1HXTA 4FMSA 2W80C 5ADXL 5GV0A 4AKRB 2MNHA 5IYUA 2ZFGA 3RBHA 2Y2XA 2Y7SA 3POXA 5DL5A 2GE4A 2KC0A 3T20A 1ZHTA 2MHLA 3AA6B 1THQA 3AA1A 4AYMC 3T0SA 1ZHWA 1OSMA 3AAAA 3AAEA 2J4UP 2ODJA 1OPFA 4O3WA 3SYSA 2K4TA 3VE1A 1IZNB 2QTKA 4GCQA 2F1VA 2O4VA 3AA7A 1MM4A 5DL6A 4O4XA 2W81C 1GFPA 1BT9A 3NSGA 4AYNA 4RLBA 4XNLA 3HOEA 2KXPA 4FZLA 4FSPA 3SYBA 5PRNA 3AA0B 1MPFA 2N2MA 7PRNA 4AKMA 2JMMA 2XE3A 4N58A 3PORA 4XNKA 5AFUK 2Y0HA 3O0EA 2LHFA 4KR8A 3TZGA 5T5FA 2FGQX 1GFQA 4GCSA 5DL7A 4FZMA 1BXWA 2YPVA 3LK41 4LSIA 4RL9A 5EE2A 4GHBA 5G26A 4AFKA 4AYID 2XE1A 1E54A 1BH3A 2KDYA 2LFUA 2OMFA 4LSHA 4LSEA 5DL8A 3PQUA 3LK3A 1HXUA 3GP6A 1YS5A 1Q9FA 3LK2B 3A2SX 3SY7A 3QRCA 3VZTX 4B61A 3WI5A 5JDPA 4AYEC 2YNKA 3VE2A 1ZHZA 1ZHXA 1HXXA 2KZ7B 3PQSA 2F1TA 4O49A 4QQ1A 4FESA 4D5UA 4PUXA 2ZLDA 4AKRA 4G75A 2XTRA 4KR4A 3VZUX 4U9CA 2PORA 4F4BA 3HWBA 2PRNA 3SZDA 4FRXA 1QJ9A 3AA6A 4E1SA 1G90A 2K0LA 4FSOA 1P4TA 2ERVA 2M06A 4FT6A 3VY9X 4D64A 1GFNA 4BUMX 3C5OA 2XG6A 3AA1B 5ADXK 3AAAB 3AAEB 1IZNA 3LK42 3SZVA 3T24A 3UPGA 3POUA 4RLCA 1GFOA 3DA4A 3V8UA 4O3ZA 3POQA 4C69X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GHB A; 
#chains in the Genus database with same CATH topology
 2XTQ A;  5E79 O;  3FYX A;  2R89 A;  3AA7 B;  3HOL A;  4IL6 O;  3DA3 A;  4GCP A;  4LSF A;  2J1N A;  5AFU L;  1G90 A;  3AA0 A;  3G7G A;  4FZN A;  1ZHY A;  2KXP B;  5D5D A;  3PF1 A;  3QRA A;  8PRN A;  2R4O A;  2Y0K A;  4GF4 A;  2XE5 A;  2X27 X;  4RJX A;  2JQY A;  1PRN A;  3PGR A;  3K19 A;  4FOZ A;  1MM5 A;  3JTY A;  4O3X B;  4Z3T A;  3EMN X;  4FQE A;  4N59 A;  2FGR A;  2XMX A;  4O3Y A;  3UU2 A;  1PHO A;  3NJT A;  1S5L O;  4G76 A;  2WJQ A;  3WI4 A;  3PRN A;  3SY9 A;  3VZW X;  1GFM A;  4FRT A;  4JCH A;  4E1T A;  4AZL A;  4D65 A;  3KVD D;  3TZG A;  4FUV A;  3LK2 A;  4O4U A;  1ORM A;  4AUI A;  3HW9 A;  2Y0L A;  5B66 O;  1Q9G A;  3LK3 B;  5FVN A;  6PRN A;  2KZ7 A;  2N2L A;  4KRA A;  1QJP A;  2XE2 A;  1H6S 1;  1QJ8 A;  2M07 A;  4JFB A;  3VY8 X;  4C4V A;  4RJW A;  2X9K A;  3UAQ A;  1HXT A;  4FMS A;  5KAI O;  3WU2 O;  2W80 C;  4K3C A;  5H2F O;  5ADX L;  5GV0 A;  4AKR B;  2MNH A;  5IYU A;  2IWW A;  2ZFG A;  3RBH A;  2Y2X A;  2Y7S A;  3POX A;  5DL5 A;  2GE4 A;  2KC0 A;  3PGS A;  3T20 A;  1ZHT A;  2MHL A;  3AA6 B;  1THQ A;  3AA1 A;  4AYM C;  3T0S A;  1ZHW A;  1OSM A;  3AAA A;  3AAE A;  2J4U P;  4C00 A;  2ODJ A;  2IWV A;  1OPF A;  4O3W A;  3SYS A;  2K4T A;  4PJ0 O;  3BRZ A;  3VE1 A;  1IZN B;  2QTK A;  4CTD A;  4GCQ A;  4UB6 O;  2F1V A;  2O4V A;  3AA7 A;  1MM4 A;  5DL6 A;  5G39 A;  4O4X A;  1T16 A;  2W81 C;  3JCU O;  1GFP A;  1BT9 A;  3NSG A;  3A0H O;  3DZM A;  4N75 A;  4RLB A;  2AXT O;  5G3A A;  5GTI O;  4XNL A;  4AYD C;  4AYN A;  3HOE A;  4PR7 A;  2KXP A;  1T1L A;  4FZL A;  4FSP A;  3SYB A;  5PRN A;  3AA0 B;  1MPF A;  2N2M A;  5G38 A;  5T5F A;  7PRN A;  4AKM A;  2JMM A;  2XE3 A;  4N58 A;  3POR A;  4XNK A;  5AFU K;  2R8A A;  2Y0H A;  2LHF A;  3A0B O;  3DWO X;  3O0E A;  2FGQ X;  1GFQ A;  4GCS A;  4KR8 A;  4FZM A;  1BXW A;  2YPV A;  3LK4 1;  4UB8 O;  5DL7 A;  4LSI A;  4RL9 A;  5EE2 A;  4GHB A;  5G26 A;  4AFK A;  4AYI D;  2XE1 A;  1E54 A;  1BH3 A;  2KDY A;  2LFU A;  2OMF A;  4LSH A;  4LSE A;  5DL8 A;  3PQU A;  2F1C X;  3LK3 A;  1HXU A;  3GP6 A;  1YS5 A;  1Q9F A;  3LK2 B;  3A2S X;  3SY7 A;  3QRC A;  3VZT X;  4B61 A;  4K3B A;  3WI5 A;  5JDP A;  4AYE C;  2YNK A;  3VE2 A;  1ZHZ A;  1ZHX A;  1HXX A;  3BS0 A;  2KZ7 B;  2R4P A;  3PQS A;  2F1T A;  4O49 A;  4QQ1 A;  4FES A;  4N74 A;  4PUX A;  4C4V B;  4D5U A;  2ZLD A;  4AKR A;  2WVP A;  5GTH O;  4G75 A;  2XTR A;  4KR4 A;  3VZU X;  4U9C A;  2POR A;  4F4B A;  3KZI O;  3HWB A;  3POQ A;  2PRN A;  3SZD A;  3PGU A;  1QJ9 A;  2R4L A;  3AA6 A;  4FRX A;  2K0L A;  5KAF O;  4E1S A;  4FSO A;  2R4N A;  1P4T A;  2WJR A;  2ERV A;  2M06 A;  4FT6 A;  3VY9 X;  2R88 A;  1GFN A;  4D64 A;  4BUM X;  3C5O A;  2XG6 A;  3AA1 B;  3DWN A;  5ADX K;  3AAA B;  3AAE B;  1IZN A;  3LK4 2;  3SZV A;  3T24 A;  3UPG A;  3POU A;  4RLC A;  5TIS O;  1GFO A;  3DA4 A;  3V8U A;  4O3Z A;  3BRY A;  5B5E O;  4C69 X; 
#chains in the Genus database with same CATH homology
 2XTQ A;  3FYX A;  3AA7 B;  3HOL A;  4LSF A;  3DA3 A;  4GCP A;  5AFU L;  2J1N A;  3AA0 A;  3G7G A;  4FZN A;  1ZHY A;  2KXP B;  5D5D A;  3QRA A;  8PRN A;  2Y0K A;  4GF4 A;  2XE5 A;  2X27 X;  4RJX A;  4AYD C;  1PRN A;  4FOZ A;  3K19 A;  4O3X B;  1MM5 A;  3JTY A;  4Z3T A;  3EMN X;  4N59 A;  2FGR A;  2XMX A;  4O3Y A;  3UU2 A;  1PHO A;  4G76 A;  3WI4 A;  3PRN A;  3SY9 A;  3VZW X;  1GFM A;  4FRT A;  4JCH A;  4E1T A;  4AZL A;  4D65 A;  3KVD D;  4FUV A;  3LK2 A;  4O4U A;  1ORM A;  4AUI A;  3HW9 A;  2Y0L A;  6PRN A;  1Q9G A;  3LK3 B;  5FVN A;  2KZ7 A;  2N2L A;  4KRA A;  1QJP A;  2XE2 A;  1H6S 1;  1QJ8 A;  2M07 A;  4JFB A;  3VY8 X;  4RJW A;  3UAQ A;  1HXT A;  4FMS A;  2W80 C;  5ADX L;  5GV0 A;  4AKR B;  2MNH A;  5IYU A;  2ZFG A;  3RBH A;  2Y2X A;  2Y7S A;  3POX A;  5DL5 A;  2GE4 A;  2KC0 A;  3T20 A;  1ZHT A;  2MHL A;  3AA6 B;  1THQ A;  3AA1 A;  4AYM C;  3T0S A;  1ZHW A;  1OSM A;  3AAA A;  3AAE A;  2J4U P;  2ODJ A;  1OPF A;  4O3W A;  3SYS A;  2K4T A;  3VE1 A;  1IZN B;  2QTK A;  4GCQ A;  2F1V A;  2O4V A;  3AA7 A;  1MM4 A;  5DL6 A;  4O4X A;  2W81 C;  1GFP A;  1BT9 A;  3NSG A;  4AYN A;  4RLB A;  4XNL A;  3HOE A;  2KXP A;  4FZL A;  4FSP A;  3SYB A;  5PRN A;  3AA0 B;  1MPF A;  2N2M A;  7PRN A;  4AKM A;  2JMM A;  2XE3 A;  4N58 A;  3POR A;  4XNK A;  5AFU K;  2Y0H A;  3O0E A;  2LHF A;  4KR8 A;  3TZG A;  5T5F A;  2FGQ X;  1GFQ A;  4GCS A;  5DL7 A;  4FZM A;  1BXW A;  2YPV A;  3LK4 1;  4LSI A;  4RL9 A;  5EE2 A;  4GHB A;  5G26 A;  4AFK A;  4AYI D;  2XE1 A;  1E54 A;  1BH3 A;  2KDY A;  2LFU A;  2OMF A;  4LSH A;  4LSE A;  5DL8 A;  3PQU A;  3LK3 A;  1HXU A;  3GP6 A;  1YS5 A;  1Q9F A;  3LK2 B;  3A2S X;  3SY7 A;  3QRC A;  3VZT X;  4B61 A;  3WI5 A;  5JDP A;  4AYE C;  2YNK A;  3VE2 A;  1ZHZ A;  1ZHX A;  1HXX A;  2KZ7 B;  3PQS A;  2F1T A;  4O49 A;  4QQ1 A;  4FES A;  4D5U A;  4PUX A;  2ZLD A;  4AKR A;  4G75 A;  2XTR A;  4KR4 A;  3VZU X;  4U9C A;  2POR A;  4F4B A;  3HWB A;  2PRN A;  3SZD A;  4FRX A;  1QJ9 A;  3AA6 A;  4E1S A;  1G90 A;  2K0L A;  4FSO A;  1P4T A;  2ERV A;  2M06 A;  4FT6 A;  3VY9 X;  4D64 A;  1GFN A;  4BUM X;  3C5O A;  2XG6 A;  3AA1 B;  5ADX K;  3AAA B;  3AAE B;  1IZN A;  3LK4 2;  3SZV A;  3T24 A;  3UPG A;  3POU A;  4RLC A;  1GFO A;  3DA4 A;  3V8U A;  4O3Z A;  3POQ A;  4C69 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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