4GHBA

Crystal structure of a porin-like protein (bacuni_01323) from bacteroides uniformis atcc 8492 at 2.32 a resolution
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
257
structure length
255
Chain Sequence
TYPTTPFSKIELKEVIESDAQPVTATHTYLYNSAGRLTGYTGKQSFTAGDELFEIENTTTVEYKDHQAVITDEAGTVSTYTLNDKGYATTCTSQDMAGNTRTYTFSYLINTEDKYYLENITEKLDDGKEYSFITIDYSNFRALRIQQKVDTFEHNSTATTPSGNEIANISEIPSLFITDMYPLSMHAVAIYGKILGEPANYLITQLIPDSESEETTTYTYTLDNRGIVTSCHAVVRHIRNGYEQDYTRTVNYTIE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of a hypothetical protein (BACUNI_01323) from Bacteroides uniformis ATCC 8492 at 2.32 A resolution
rcsb
source organism Bacteroides uniformis
molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein
total genus 55
structure length 255
sequence length 257
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15283 DUF4595 Domain of unknown function (DUF4595) with porin-like fold
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.190 Mainly Beta Beta Barrel Porin Porin 4ghbA00
4GHBA
chains in the Genus database with same CATH superfamily
2OMFA 4LSIA 3WI4A 1ORMA 4BUMX 5AFUK 3SZDA 3AA0A 5ADXK 1MM5A 1YS5A 2XTRA 3C5OA 1GFQA 5T5FA 4KR8A 4FZLA 2F1VA 3UU2A 2R4PA 4AKMA 2KXPA 1P4TA 3LK41 1ZHZA 4LSHA 4KRAA 4UB8O 3WI5A 4PR7A 2ZFGA 5FVNA 4QQ1A 5B5EO 4AUIA 4RJXA 3KVDD 4D5UA 2O4VA 3NSGA 4AYID 4U9CA 2JMMA 4RL9A 4O3WA 1MM4A 3AA6B 4KR4A 3AA7A 3BS0A 4N58A 1T1LA 4XNKA 5PRNA 4Z3TA 2FGQX 2K4TA 1E54A 3AAEB 4JCHA 4XNLA 2WJRA 5D5DA 1HXTA 5H2FO 1T16A 4GCSA 4O3YA 5KAIO 2YPVA 3AA7B 3HOEA 1IZNB 2XMXA 2WJQA 2F1TA 2KC0A 2XE1A 3G7GA 4O3XB 3VZUX 1HXXA 1BT9A 5IYUA 4C4VB 5G3AA 2JQYA 2WVPA 4G76A 4GHBA 3DZMA 1GFPA 2ODJA 1Q9FA 8PRNA 1GFOA 3T0SA 3AA6A 5G26A 2IWWA 4O4UA 4AZLA 4D65A 1OPFA 2KZ7B 4IL6O 5GTIO 3FYXA 3QRAA 2K0LA 3O0EA 5G39A 5DL8A 2Y7SA 3GP6A 4N59A 3SY9A 1PRNA 4RLCA 4AYDC 3VY9X 2XTQA 2KXPB 3A2SX 4FZNA 4FSOA 2R89A 2XE5A 5JDPA 3V8UA 3AA0B 1GFMA 3DA4A 2R4OA 3PQSA 4RJWA 5E79O 3HW9A 2J4UP 1S5LO 2PORA 3RBHA 3PRNA 2W80C 4FRXA 4FSPA 1QJ9A 4RLBA 4C69X 4FT6A 4JFBA 3SYBA 2AXTO 1BXWA 3AA1B 3PF1A 1H6S1 4B61A 5GV0A 3TZGA 3A0BO 3VZTX 4K3BA 3T24A 3UAQA 4FOZA 4FUVA 5B66O 1ZHXA 1OSMA 4AYMC 2XG6A 5EE2A 4AYNA 3DWNA 1ZHWA 2XE2A 1IZNA 5G38A 2R8AA 3VZWX 2J1NA 2R88A 3DWOX 3PGUA 3A0HO 2QTKA 4O4XA 3VE2A 2X9KA 4AKRA 3POQA 4G75A 5AFUL 4C00A 4FZMA 4O3ZA 2MHLA 2ZLDA 3KZIO 3BRYA 2Y0HA 3JCUO 4D64A 2M06A 3POUA 5DL5A 4CTDA 3LK2B 2IWVA 3SZVA 2W81C 2KDYA 5DL7A 3LK3A 3SYSA 7PRNA 3UPGA 3NJTA 1Q9GA 5TISO 4K3CA 4AKRB 5GTHO 4FESA 2KZ7A 3VE1A 4FMSA 2R4LA 4FRTA 4N75A 5ADXL 1MPFA 4AYEC 1HXUA 3LK2A 1QJPA 1PHOA 3HOLA 2M07A 2PRNA 2LHFA 3JTYA 3PORA 2XE3A 3BRZA 2Y0KA 2YNKA 3LK3B 4PJ0O 3AAEA 4LSEA 3T20A 4E1TA 4FQEA 2N2LA 3K19A 4GF4A 2MNHA 3PQUA 3WU2O 4AFKA 1GFNA 5DL6A 4E1SA 2FGRA 4O49A 2N2MA 6PRNA 1BH3A 3AAAA 5KAFO 2GE4A 3AA1A 3DA3A 3PGSA 3LK42 3SY7A 4F4BA 2ERVA 2F1CX 4GCQA 3QRCA 2R4NA 3POXA 4N74A 4C4VA 2Y0LA 1THQA 3EMNX 1ZHTA 2X27X 3VY8X 2Y2XA 3AAAB 2LFUA 4GCPA 4LSFA 1G90A 1QJ8A 3HWBA 4UB6O 3PGRA 1ZHYA 4PUXA
chains in the Genus database with same CATH topology
2OMFA 4LSIA 3WI4A 1ORMA 4BUMX 5AFUK 3SZDA 3AA0A 5ADXK 1MM5A 1YS5A 2XTRA 3C5OA 1GFQA 5T5FA 4KR8A 4FZLA 2F1VA 3UU2A 4AKMA 2KXPA 1P4TA 3LK41 1ZHZA 4LSHA 4KRAA 3WI5A 2ZFGA 4QQ1A 4AUIA 4RJXA 3KVDD 4D5UA 2O4VA 3NSGA 4AYID 4U9CA 2JMMA 4RL9A 4O3WA 1MM4A 3AA6B 4KR4A 3AA7A 4N58A 5PRNA 4XNKA 4Z3TA 2FGQX 2K4TA 1E54A 3AAEB 4JCHA 4XNLA 5D5DA 1HXTA 4GCSA 4O3YA 2YPVA 3AA7B 3HOEA 1IZNB 2XMXA 2F1TA 2KC0A 2XE1A 3G7GA 4O3XB 3VZUX 1HXXA 1BT9A 5IYUA 4G76A 4GHBA 1GFPA 2ODJA 1Q9FA 8PRNA 1GFOA 3T0SA 3AA6A 5G26A 4O4UA 4AZLA 4D65A 1OPFA 2KZ7B 3FYXA 3QRAA 2K0LA 3O0EA 5DL8A 2Y7SA 3GP6A 4N59A 3SY9A 1PRNA 4RLCA 4AYDC 3VY9X 2XTQA 2KXPB 3A2SX 4FZNA 4FSOA 5JDPA 2XE5A 3V8UA 3AA0B 1GFMA 3DA4A 4RJWA 3PQSA 3HW9A 2J4UP 2PORA 3RBHA 3PRNA 2W80C 4FRXA 4FSPA 1QJ9A 4RLBA 4C69X 4FT6A 4JFBA 3SYBA 1BXWA 3AA1B 4B61A 1H6S1 5GV0A 3TZGA 3VZTX 3T24A 3UAQA 4FOZA 4FUVA 1ZHXA 1OSMA 4AYMC 2XG6A 5EE2A 4AYNA 1ZHWA 2XE2A 1IZNA 3VZWX 2J1NA 2QTKA 4O4XA 3VE2A 4AKRA 3POQA 4G75A 5AFUL 4FZMA 4O3ZA 2MHLA 2ZLDA 2Y0HA 4D64A 2M06A 3POUA 5DL5A 3LK2B 3SZVA 2W81C 2KDYA 5DL7A 3LK3A 3SYSA 7PRNA 3UPGA 1Q9GA 4AKRB 4FESA 2KZ7A 3VE1A 4FMSA 4FRTA 5ADXL 1MPFA 4AYEC 1HXUA 3LK2A 1QJPA 1PHOA 3HOLA 2M07A 2PRNA 2LHFA 3JTYA 3PORA 2XE3A 2Y0KA 2YNKA 3LK3B 3AAEA 4LSEA 3T20A 4E1TA 2N2LA 3K19A 4GF4A 2MNHA 3PQUA 4AFKA 1GFNA 5DL6A 4E1SA 2FGRA 4O49A 2N2MA 6PRNA 1BH3A 3AAAA 2GE4A 3AA1A 3DA3A 3LK42 3SY7A 4F4BA 2ERVA 4GCQA 3QRCA 3POXA 2Y0LA 1THQA 3EMNX 1ZHTA 2X27X 3VY8X 2Y2XA 3AAAB 2LFUA 4GCPA 4LSFA 1G90A 1QJ8A 3HWBA 5FVNA 1ZHYA 4PUXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GHB A; 
#chains in the Genus database with same CATH topology
 2OMF A;  4LSI A;  3WI4 A;  1ORM A;  4BUM X;  5AFU K;  3SZD A;  3AA0 A;  5ADX K;  1MM5 A;  1YS5 A;  2XTR A;  3C5O A;  1GFQ A;  5T5F A;  4KR8 A;  4FZL A;  2F1V A;  3UU2 A;  2R4P A;  4AKM A;  2KXP A;  1P4T A;  3LK4 1;  1ZHZ A;  4LSH A;  4KRA A;  4UB8 O;  3WI5 A;  4PR7 A;  2ZFG A;  5FVN A;  4QQ1 A;  5B5E O;  4AUI A;  4RJX A;  3KVD D;  4D5U A;  2O4V A;  3NSG A;  4AYI D;  4U9C A;  2JMM A;  4RL9 A;  4O3W A;  1MM4 A;  3AA6 B;  4KR4 A;  3AA7 A;  3BS0 A;  4N58 A;  1T1L A;  4XNK A;  5PRN A;  4Z3T A;  2FGQ X;  2K4T A;  1E54 A;  3AAE B;  4JCH A;  4XNL A;  2WJR A;  5D5D A;  1HXT A;  5H2F O;  1T16 A;  4GCS A;  4O3Y A;  5KAI O;  2YPV A;  3AA7 B;  3HOE A;  1IZN B;  2XMX A;  2WJQ A;  2F1T A;  2KC0 A;  2XE1 A;  3G7G A;  4O3X B;  3VZU X;  1HXX A;  1BT9 A;  5IYU A;  4C4V B;  5G3A A;  2JQY A;  2WVP A;  4G76 A;  4GHB A;  3DZM A;  1GFP A;  2ODJ A;  1Q9F A;  8PRN A;  1GFO A;  3T0S A;  3AA6 A;  5G26 A;  2IWW A;  4O4U A;  4AZL A;  4D65 A;  1OPF A;  2KZ7 B;  4IL6 O;  5GTI O;  3FYX A;  3QRA A;  2K0L A;  3O0E A;  5G39 A;  5DL8 A;  2Y7S A;  3GP6 A;  4N59 A;  3SY9 A;  1PRN A;  4RLC A;  4AYD C;  3VY9 X;  2XTQ A;  2KXP B;  3A2S X;  4FZN A;  4FSO A;  2R89 A;  2XE5 A;  5JDP A;  3V8U A;  3AA0 B;  1GFM A;  3DA4 A;  2R4O A;  3PQS A;  4RJW A;  5E79 O;  3HW9 A;  2J4U P;  1S5L O;  2POR A;  3RBH A;  3PRN A;  2W80 C;  4FRX A;  4FSP A;  1QJ9 A;  4RLB A;  4C69 X;  4FT6 A;  4JFB A;  3SYB A;  2AXT O;  1BXW A;  3AA1 B;  3PF1 A;  1H6S 1;  4B61 A;  5GV0 A;  3TZG A;  3A0B O;  3VZT X;  4K3B A;  3T24 A;  3UAQ A;  4FOZ A;  4FUV A;  5B66 O;  1ZHX A;  1OSM A;  4AYM C;  2XG6 A;  5EE2 A;  4AYN A;  3DWN A;  1ZHW A;  2XE2 A;  1IZN A;  5G38 A;  2R8A A;  3VZW X;  2J1N A;  2R88 A;  3DWO X;  3PGU A;  3A0H O;  2QTK A;  4O4X A;  3VE2 A;  2X9K A;  4AKR A;  3POQ A;  4G75 A;  5AFU L;  4C00 A;  4FZM A;  4O3Z A;  2MHL A;  2ZLD A;  3KZI O;  3BRY A;  2Y0H A;  3JCU O;  4D64 A;  2M06 A;  3POU A;  5DL5 A;  4CTD A;  3LK2 B;  2IWV A;  3SZV A;  2W81 C;  2KDY A;  5DL7 A;  3LK3 A;  3SYS A;  7PRN A;  3UPG A;  3NJT A;  1Q9G A;  5TIS O;  4K3C A;  4AKR B;  5GTH O;  4FES A;  2KZ7 A;  3VE1 A;  4FMS A;  2R4L A;  4FRT A;  4N75 A;  5ADX L;  1MPF A;  4AYE C;  1HXU A;  3LK2 A;  1QJP A;  1PHO A;  3HOL A;  2M07 A;  2PRN A;  2LHF A;  3JTY A;  3POR A;  2XE3 A;  3BRZ A;  2Y0K A;  2YNK A;  3LK3 B;  4PJ0 O;  3AAE A;  4LSE A;  3T20 A;  4E1T A;  4FQE A;  2N2L A;  3K19 A;  4GF4 A;  2MNH A;  3PQU A;  3WU2 O;  4AFK A;  1GFN A;  5DL6 A;  4E1S A;  2FGR A;  4O49 A;  2N2M A;  6PRN A;  1BH3 A;  3AAA A;  5KAF O;  2GE4 A;  3AA1 A;  3DA3 A;  3PGS A;  3LK4 2;  3SY7 A;  4F4B A;  2ERV A;  2F1C X;  4GCQ A;  3QRC A;  2R4N A;  3POX A;  4N74 A;  4C4V A;  2Y0L A;  1THQ A;  3EMN X;  1ZHT A;  2X27 X;  3VY8 X;  2Y2X A;  3AAA B;  2LFU A;  4GCP A;  4LSF A;  1G90 A;  1QJ8 A;  3HWB A;  4UB6 O;  3PGR A;  1ZHY A;  4PUX A; 
#chains in the Genus database with same CATH homology
 2OMF A;  4LSI A;  3WI4 A;  1ORM A;  4BUM X;  5AFU K;  3SZD A;  3AA0 A;  5ADX K;  1MM5 A;  1YS5 A;  2XTR A;  3C5O A;  1GFQ A;  5T5F A;  4KR8 A;  4FZL A;  2F1V A;  3UU2 A;  4AKM A;  2KXP A;  1P4T A;  3LK4 1;  1ZHZ A;  4LSH A;  4KRA A;  3WI5 A;  2ZFG A;  4QQ1 A;  4AUI A;  4RJX A;  3KVD D;  4D5U A;  2O4V A;  3NSG A;  4AYI D;  4U9C A;  2JMM A;  4RL9 A;  4O3W A;  1MM4 A;  3AA6 B;  4KR4 A;  3AA7 A;  4N58 A;  5PRN A;  4XNK A;  4Z3T A;  2FGQ X;  2K4T A;  1E54 A;  3AAE B;  4JCH A;  4XNL A;  5D5D A;  1HXT A;  4GCS A;  4O3Y A;  2YPV A;  3AA7 B;  3HOE A;  1IZN B;  2XMX A;  2F1T A;  2KC0 A;  2XE1 A;  3G7G A;  4O3X B;  3VZU X;  1HXX A;  1BT9 A;  5IYU A;  4G76 A;  4GHB A;  1GFP A;  2ODJ A;  1Q9F A;  8PRN A;  1GFO A;  3T0S A;  3AA6 A;  5G26 A;  4O4U A;  4AZL A;  4D65 A;  1OPF A;  2KZ7 B;  3FYX A;  3QRA A;  2K0L A;  3O0E A;  5DL8 A;  2Y7S A;  3GP6 A;  4N59 A;  3SY9 A;  1PRN A;  4RLC A;  4AYD C;  3VY9 X;  2XTQ A;  2KXP B;  3A2S X;  4FZN A;  4FSO A;  5JDP A;  2XE5 A;  3V8U A;  3AA0 B;  1GFM A;  3DA4 A;  4RJW A;  3PQS A;  3HW9 A;  2J4U P;  2POR A;  3RBH A;  3PRN A;  2W80 C;  4FRX A;  4FSP A;  1QJ9 A;  4RLB A;  4C69 X;  4FT6 A;  4JFB A;  3SYB A;  1BXW A;  3AA1 B;  4B61 A;  1H6S 1;  5GV0 A;  3TZG A;  3VZT X;  3T24 A;  3UAQ A;  4FOZ A;  4FUV A;  1ZHX A;  1OSM A;  4AYM C;  2XG6 A;  5EE2 A;  4AYN A;  1ZHW A;  2XE2 A;  1IZN A;  3VZW X;  2J1N A;  2QTK A;  4O4X A;  3VE2 A;  4AKR A;  3POQ A;  4G75 A;  5AFU L;  4FZM A;  4O3Z A;  2MHL A;  2ZLD A;  2Y0H A;  4D64 A;  2M06 A;  3POU A;  5DL5 A;  3LK2 B;  3SZV A;  2W81 C;  2KDY A;  5DL7 A;  3LK3 A;  3SYS A;  7PRN A;  3UPG A;  1Q9G A;  4AKR B;  4FES A;  2KZ7 A;  3VE1 A;  4FMS A;  4FRT A;  5ADX L;  1MPF A;  4AYE C;  1HXU A;  3LK2 A;  1QJP A;  1PHO A;  3HOL A;  2M07 A;  2PRN A;  2LHF A;  3JTY A;  3POR A;  2XE3 A;  2Y0K A;  2YNK A;  3LK3 B;  3AAE A;  4LSE A;  3T20 A;  4E1T A;  2N2L A;  3K19 A;  4GF4 A;  2MNH A;  3PQU A;  4AFK A;  1GFN A;  5DL6 A;  4E1S A;  2FGR A;  4O49 A;  2N2M A;  6PRN A;  1BH3 A;  3AAA A;  2GE4 A;  3AA1 A;  3DA3 A;  3LK4 2;  3SY7 A;  4F4B A;  2ERV A;  4GCQ A;  3QRC A;  3POX A;  2Y0L A;  1THQ A;  3EMN X;  1ZHT A;  2X27 X;  3VY8 X;  2Y2X A;  3AAA B;  2LFU A;  4GCP A;  4LSF A;  1G90 A;  1QJ8 A;  3HWB A;  5FVN A;  1ZHY A;  4PUX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...