4GHBA

Crystal structure of a porin-like protein (bacuni_01323) from bacteroides uniformis atcc 8492 at 2.32 a resolution
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
257
structure length
255
Chain Sequence
TYPTTPFSKIELKEVIESDAQPVTATHTYLYNSAGRLTGYTGKQSFTAGDELFEIENTTTVEYKDHQAVITDEAGTVSTYTLNDKGYATTCTSQDMAGNTRTYTFSYLINTEDKYYLENITEKLDDGKEYSFITIDYSNFRALRIQQKVDTFEHNSTATTPSGNEIANISEIPSLFITDMYPLSMHAVAIYGKILGEPANYLITQLIPDSESEETTTYTYTLDNRGIVTSCHAVVRHIRNGYEQDYTRTVNYTIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein (BACUNI_01323) from Bacteroides uniformis ATCC 8492 at 2.32 A resolution
rcsb
source organism Bacteroides uniformis
molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein
total genus 55
structure length 255
sequence length 257
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15283 DUF4595 Domain of unknown function (DUF4595) with porin-like fold
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.190 Mainly Beta Beta Barrel Porin Porin 4ghbA00
4GHBA
chains in the Genus database with same CATH superfamily
2GE4A 3LK42 3NJTA 1GFOA 4FSOA 2PORA 4FT6A 3VZUX 3LK2A 3SY9A 4AKMA 4AUIA 3T20A 2K0LA 3PGSA 3POXA 3HOLA 1IZNA 2K4TA 3AA6A 4UB8O 1BH3A 3AAEB 4FRXA 4K3BA 1ZHTA 3LK2B 3UU2A 2Y7SA 3K19A 1MM4A 5FVNA 5GV0A 4FMSA 4AZLA 2W80C 3SYBA 2LFUA 2ZLDA 3PF1A 4RLBA 1QJ9A 4JFBA 1P4TA 4N58A 4JCHA 5KAFO 2N2MA 3VE1A 5AFUK 1YS5A 4XNLA 4KRAA 1QJ8A 4N59A 4O3XB 3AAAA 3VY9X 4KR8A 1BT9A 2R8AA 4RJWA 2KDYA 3SYSA 3AA1B 2MNHA 2XG6A 2ODJA 3GP6A 1GFQA 4FQEA 4G75A 4K3CA 1ZHYA 4O3WA 5G38A 3TZGA 1T1LA 3AA7A 4QQ1A 1H6S1 5DL6A 5DL7A 1ZHZA 3JTYA 3QRCA 4Z3TA 2FGQX 2LHFA 5H2FO 4FOZA 1PRNA 3LK41 4IL6O 4AKRB 4FESA 5DL8A 2OMFA 4XNKA 3DWOX 2J4UP 1GFPA 2JQYA 7PRNA 4GF4A 3AA0A 2FGRA 2XE5A 3A0HO 3A0BO 5GTIO 5TISO 3VY8X 4E1SA 3V8UA 5T5FA 4LSFA 2F1CX 2O4VA 4AKRA 2KZ7A 4PUXA 5G3AA 2PRNA 3JCUO 3RBHA 3BS0A 3SZDA 2XTQA 3T0SA 4D65A 2XE2A 3KVDD 4GCQA 3AA0B 3POUA 4D5UA 1HXXA 5DL5A 2JMMA 2X27X 2XE3A 2XE1A 3UAQA 3EMNX 3AA7B 4PR7A 5B5EO 2F1VA 2X9KA 4F4BA 3HOEA 5AFUL 5E79O 1G90A 2R4OA 3PGRA 4FRTA 3PORA 3DA4A 1PHOA 3VZWX 3VZTX 2R4PA 2F1TA 3LK3A 1MPFA 4FZMA 2YPVA 4AFKA 4C00A 4AYDC 2ERVA 3AA1A 2N2LA 5G39A 4AYNA 2Y2XA 1S5LO 4N75A 3A2SX 4G76A 4FUVA 4BUMX 1IZNB 2Y0LA 2R4LA 3AA6B 4LSHA 4C4VA 3AAEA 5EE2A 2R89A 4C4VB 1ORMA 4CTDA 6PRNA 3UPGA 1GFMA 4GCSA 4O3ZA 3WI4A 2QTKA 8PRNA 3HW9A 5JDPA 3DZMA 5D5DA 2XMXA 3HWBA 1ZHXA 2Y0KA 2W81C 3LK3B 4RJXA 2J1NA 2R88A 3KZIO 4O3YA 1THQA 2WVPA 3BRYA 3NSGA 5KAIO 1MM5A 4B61A 5ADXL 2MHLA 5G26A 3PRNA 4FZLA 1ZHWA 3QRAA 3WI5A 2R4NA 2KZ7B 5GTHO 2KXPB 3O0EA 3BRZA 3POQA 4E1TA 4FZNA 4O4XA 2KC0A 4FSPA 3T24A 3PQUA 1GFNA 3DA3A 4O4UA 5PRNA 4LSIA 4RL9A 1Q9FA 3C5OA 4RLCA 5B66O 4AYEC 1HXUA 1OSMA 4N74A 3SY7A 5IYUA 1T16A 4LSEA 2IWWA 3G7GA 1OPFA 1HXTA 4GHBA 2YNKA 3AAAB 4D64A 1Q9GA 2Y0HA 4AYMC 4AYID 3PQSA 1E54A 3WU2O 4GCPA 3PGUA 4PJ0O 1QJPA 2XTRA 3SZVA 2WJRA 2M06A 2M07A 2AXTO 2ZFGA 4KR4A 3FYXA 4O49A 2WJQA 3VE2A 1BXWA 4UB6O 5ADXK 4U9CA 3DWNA 2KXPA 2IWVA 4C69X
chains in the Genus database with same CATH topology
2GE4A 3LK42 1GFOA 4FSOA 2PORA 4FT6A 3VZUX 3LK2A 3SY9A 4AKMA 4AUIA 3T20A 2K0LA 3POXA 3HOLA 1IZNA 2K4TA 3AA6A 1BH3A 3AAEB 4FRXA 3UU2A 1ZHTA 3LK2B 5GV0A 2Y7SA 3K19A 1MM4A 5FVNA 4FMSA 4AZLA 2W80C 3SYBA 2LFUA 2ZLDA 4RLBA 1QJ9A 4JFBA 1P4TA 4N58A 4JCHA 3VE1A 2N2MA 5AFUK 1YS5A 4XNLA 4KRAA 1QJ8A 4N59A 4O3XB 3AAAA 3VY9X 4KR8A 1BT9A 4RJWA 2KDYA 3SYSA 3AA1B 2MNHA 2XG6A 2ODJA 3GP6A 1GFQA 4G75A 1ZHYA 4O3WA 3TZGA 3AA7A 4QQ1A 1H6S1 5DL6A 5DL7A 1ZHZA 3JTYA 3QRCA 4Z3TA 2FGQX 2LHFA 4FOZA 1PRNA 3LK41 4AKRB 4FESA 5DL8A 2OMFA 4XNKA 2J4UP 1GFPA 7PRNA 4GF4A 3AA0A 2FGRA 2XE5A 3VY8X 4E1SA 3V8UA 5T5FA 4LSFA 4AKRA 2O4VA 2KZ7A 4PUXA 3RBHA 2PRNA 3SZDA 4D65A 3T0SA 2XTQA 2XE2A 3KVDD 4GCQA 3AA0B 3POUA 4D5UA 1HXXA 5DL5A 2JMMA 2X27X 2XE3A 2XE1A 3UAQA 3EMNX 3AA7B 2F1VA 5AFUL 4F4BA 3HOEA 1G90A 4FRTA 3PORA 3DA4A 1PHOA 3VZWX 3VZTX 2F1TA 3LK3A 1MPFA 4FZMA 2YPVA 4AFKA 4AYDC 2ERVA 3AA1A 2N2LA 4AYNA 2Y2XA 3A2SX 4G76A 4FUVA 4BUMX 1IZNB 2Y0LA 3AA6B 4LSHA 3AAEA 5EE2A 6PRNA 1ORMA 3UPGA 1GFMA 4GCSA 4O3ZA 3WI4A 2QTKA 8PRNA 3HW9A 5JDPA 5D5DA 2XMXA 3HWBA 1ZHXA 2Y0KA 2W81C 3LK3B 4RJXA 2J1NA 4O3YA 1THQA 3NSGA 5ADXL 4B61A 1MM5A 2MHLA 5G26A 3PRNA 4FZLA 1ZHWA 3QRAA 3WI5A 2KZ7B 2KXPB 3O0EA 3POQA 4E1TA 4FZNA 4O4XA 2KC0A 4FSPA 3T24A 3PQUA 1GFNA 3DA3A 4O4UA 5PRNA 4LSIA 4RL9A 1Q9FA 3C5OA 4RLCA 4AYEC 1HXUA 1OSMA 5IYUA 4LSEA 3G7GA 1OPFA 1HXTA 4GHBA 2YNKA 3AAAB 4D64A 1Q9GA 2Y0HA 4AYMC 4AYID 3PQSA 1E54A 4GCPA 1QJPA 2XTRA 3SZVA 2M06A 2M07A 2ZFGA 4KR4A 3FYXA 4O49A 3VE2A 1BXWA 5ADXK 4U9CA 2KXPA 3SY7A 4C69X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GHB A; 
#chains in the Genus database with same CATH topology
 2GE4 A;  3LK4 2;  3NJT A;  1GFO A;  4FSO A;  2POR A;  4FT6 A;  3VZU X;  3LK2 A;  3SY9 A;  4AKM A;  4AUI A;  3T20 A;  2K0L A;  3PGS A;  3POX A;  3HOL A;  1IZN A;  2K4T A;  3AA6 A;  4UB8 O;  1BH3 A;  3AAE B;  4FRX A;  4K3B A;  1ZHT A;  3LK2 B;  3UU2 A;  2Y7S A;  3K19 A;  1MM4 A;  5FVN A;  5GV0 A;  4FMS A;  4AZL A;  2W80 C;  3SYB A;  2LFU A;  2ZLD A;  3PF1 A;  4RLB A;  1QJ9 A;  4JFB A;  1P4T A;  4N58 A;  4JCH A;  5KAF O;  2N2M A;  3VE1 A;  5AFU K;  1YS5 A;  4XNL A;  4KRA A;  1QJ8 A;  4N59 A;  4O3X B;  3AAA A;  3VY9 X;  4KR8 A;  1BT9 A;  2R8A A;  4RJW A;  2KDY A;  3SYS A;  3AA1 B;  2MNH A;  2XG6 A;  2ODJ A;  3GP6 A;  1GFQ A;  4FQE A;  4G75 A;  4K3C A;  1ZHY A;  4O3W A;  5G38 A;  3TZG A;  1T1L A;  3AA7 A;  4QQ1 A;  1H6S 1;  5DL6 A;  5DL7 A;  1ZHZ A;  3JTY A;  3QRC A;  4Z3T A;  2FGQ X;  2LHF A;  5H2F O;  4FOZ A;  1PRN A;  3LK4 1;  4IL6 O;  4AKR B;  4FES A;  5DL8 A;  2OMF A;  4XNK A;  3DWO X;  2J4U P;  1GFP A;  2JQY A;  7PRN A;  4GF4 A;  3AA0 A;  2FGR A;  2XE5 A;  3A0H O;  3A0B O;  5GTI O;  5TIS O;  3VY8 X;  4E1S A;  3V8U A;  5T5F A;  4LSF A;  2F1C X;  2O4V A;  4AKR A;  2KZ7 A;  4PUX A;  5G3A A;  2PRN A;  3JCU O;  3RBH A;  3BS0 A;  3SZD A;  2XTQ A;  3T0S A;  4D65 A;  2XE2 A;  3KVD D;  4GCQ A;  3AA0 B;  3POU A;  4D5U A;  1HXX A;  5DL5 A;  2JMM A;  2X27 X;  2XE3 A;  2XE1 A;  3UAQ A;  3EMN X;  3AA7 B;  4PR7 A;  5B5E O;  2F1V A;  2X9K A;  4F4B A;  3HOE A;  5AFU L;  5E79 O;  1G90 A;  2R4O A;  3PGR A;  4FRT A;  3POR A;  3DA4 A;  1PHO A;  3VZW X;  3VZT X;  2R4P A;  2F1T A;  3LK3 A;  1MPF A;  4FZM A;  2YPV A;  4AFK A;  4C00 A;  4AYD C;  2ERV A;  3AA1 A;  2N2L A;  5G39 A;  4AYN A;  2Y2X A;  1S5L O;  4N75 A;  3A2S X;  4G76 A;  4FUV A;  4BUM X;  1IZN B;  2Y0L A;  2R4L A;  3AA6 B;  4LSH A;  4C4V A;  3AAE A;  5EE2 A;  2R89 A;  4C4V B;  1ORM A;  4CTD A;  6PRN A;  3UPG A;  1GFM A;  4GCS A;  4O3Z A;  3WI4 A;  2QTK A;  8PRN A;  3HW9 A;  5JDP A;  3DZM A;  5D5D A;  2XMX A;  3HWB A;  1ZHX A;  2Y0K A;  2W81 C;  3LK3 B;  4RJX A;  2J1N A;  2R88 A;  3KZI O;  4O3Y A;  1THQ A;  2WVP A;  3BRY A;  3NSG A;  5KAI O;  1MM5 A;  4B61 A;  5ADX L;  2MHL A;  5G26 A;  3PRN A;  4FZL A;  1ZHW A;  3QRA A;  3WI5 A;  2R4N A;  2KZ7 B;  5GTH O;  2KXP B;  3O0E A;  3BRZ A;  3POQ A;  4E1T A;  4FZN A;  4O4X A;  2KC0 A;  4FSP A;  3T24 A;  3PQU A;  1GFN A;  3DA3 A;  4O4U A;  5PRN A;  4LSI A;  4RL9 A;  1Q9F A;  3C5O A;  4RLC A;  5B66 O;  4AYE C;  1HXU A;  1OSM A;  4N74 A;  3SY7 A;  5IYU A;  1T16 A;  4LSE A;  2IWW A;  3G7G A;  1OPF A;  1HXT A;  4GHB A;  2YNK A;  3AAA B;  4D64 A;  1Q9G A;  2Y0H A;  4AYM C;  4AYI D;  3PQS A;  1E54 A;  3WU2 O;  4GCP A;  3PGU A;  4PJ0 O;  1QJP A;  2XTR A;  3SZV A;  2WJR A;  2M06 A;  2M07 A;  2AXT O;  2ZFG A;  4KR4 A;  3FYX A;  4O49 A;  2WJQ A;  3VE2 A;  1BXW A;  4UB6 O;  5ADX K;  4U9C A;  3DWN A;  2KXP A;  2IWV A;  4C69 X; 
#chains in the Genus database with same CATH homology
 2GE4 A;  3LK4 2;  1GFO A;  4FSO A;  2POR A;  4FT6 A;  3VZU X;  3LK2 A;  3SY9 A;  4AKM A;  4AUI A;  3T20 A;  2K0L A;  3POX A;  3HOL A;  1IZN A;  2K4T A;  3AA6 A;  1BH3 A;  3AAE B;  4FRX A;  3UU2 A;  1ZHT A;  3LK2 B;  5GV0 A;  2Y7S A;  3K19 A;  1MM4 A;  5FVN A;  4FMS A;  4AZL A;  2W80 C;  3SYB A;  2LFU A;  2ZLD A;  4RLB A;  1QJ9 A;  4JFB A;  1P4T A;  4N58 A;  4JCH A;  3VE1 A;  2N2M A;  5AFU K;  1YS5 A;  4XNL A;  4KRA A;  1QJ8 A;  4N59 A;  4O3X B;  3AAA A;  3VY9 X;  4KR8 A;  1BT9 A;  4RJW A;  2KDY A;  3SYS A;  3AA1 B;  2MNH A;  2XG6 A;  2ODJ A;  3GP6 A;  1GFQ A;  4G75 A;  1ZHY A;  4O3W A;  3TZG A;  3AA7 A;  4QQ1 A;  1H6S 1;  5DL6 A;  5DL7 A;  1ZHZ A;  3JTY A;  3QRC A;  4Z3T A;  2FGQ X;  2LHF A;  4FOZ A;  1PRN A;  3LK4 1;  4AKR B;  4FES A;  5DL8 A;  2OMF A;  4XNK A;  2J4U P;  1GFP A;  7PRN A;  4GF4 A;  3AA0 A;  2FGR A;  2XE5 A;  3VY8 X;  4E1S A;  3V8U A;  5T5F A;  4LSF A;  4AKR A;  2O4V A;  2KZ7 A;  4PUX A;  3RBH A;  2PRN A;  3SZD A;  4D65 A;  3T0S A;  2XTQ A;  2XE2 A;  3KVD D;  4GCQ A;  3AA0 B;  3POU A;  4D5U A;  1HXX A;  5DL5 A;  2JMM A;  2X27 X;  2XE3 A;  2XE1 A;  3UAQ A;  3EMN X;  3AA7 B;  2F1V A;  5AFU L;  4F4B A;  3HOE A;  1G90 A;  4FRT A;  3POR A;  3DA4 A;  1PHO A;  3VZW X;  3VZT X;  2F1T A;  3LK3 A;  1MPF A;  4FZM A;  2YPV A;  4AFK A;  4AYD C;  2ERV A;  3AA1 A;  2N2L A;  4AYN A;  2Y2X A;  3A2S X;  4G76 A;  4FUV A;  4BUM X;  1IZN B;  2Y0L A;  3AA6 B;  4LSH A;  3AAE A;  5EE2 A;  6PRN A;  1ORM A;  3UPG A;  1GFM A;  4GCS A;  4O3Z A;  3WI4 A;  2QTK A;  8PRN A;  3HW9 A;  5JDP A;  5D5D A;  2XMX A;  3HWB A;  1ZHX A;  2Y0K A;  2W81 C;  3LK3 B;  4RJX A;  2J1N A;  4O3Y A;  1THQ A;  3NSG A;  5ADX L;  4B61 A;  1MM5 A;  2MHL A;  5G26 A;  3PRN A;  4FZL A;  1ZHW A;  3QRA A;  3WI5 A;  2KZ7 B;  2KXP B;  3O0E A;  3POQ A;  4E1T A;  4FZN A;  4O4X A;  2KC0 A;  4FSP A;  3T24 A;  3PQU A;  1GFN A;  3DA3 A;  4O4U A;  5PRN A;  4LSI A;  4RL9 A;  1Q9F A;  3C5O A;  4RLC A;  4AYE C;  1HXU A;  1OSM A;  5IYU A;  4LSE A;  3G7G A;  1OPF A;  1HXT A;  4GHB A;  2YNK A;  3AAA B;  4D64 A;  1Q9G A;  2Y0H A;  4AYM C;  4AYI D;  3PQS A;  1E54 A;  4GCP A;  1QJP A;  2XTR A;  3SZV A;  2M06 A;  2M07 A;  2ZFG A;  4KR4 A;  3FYX A;  4O49 A;  3VE2 A;  1BXW A;  5ADX K;  4U9C A;  2KXP A;  3SY7 A;  4C69 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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